Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0015806

Physical Location & Seq

Genomic Coordinates Forward (+)

567761 .. 570716

Gene Structure 2956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G006800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGTCATCATTTCTTCATCTTGATGCTCATTATTATTATTATTATTCATGTGTAGCTCTAATCTTACTAGGCCTTGGATTATTAGGGCAAGCCAATGCCCAAATGTATAGAGTTGATAGCAATAATAAGAAGCTGGCTTATTACACCATCACTGTTGATCAATCTGGCCATGGCAATTTCACCTCCATTCAATCAGCCATTGATGCTGTTCCTATAAACAACAGGAACTGGGTTTCTATCAAGATCAAGGCAGGCACCTATAAGGAAAAGGTGATCATCCCCGTTGACAAGCCATACATAATTCTCAAAGGAGAAAATAGGCATAAAACACAGATTGTTTGGGATGATCACGACTCAGTTGCACAAAGCCCTACTTTTGCCTCTTATGCCGACAGTATCATTGTCAAATCCATCAGCTTTGTGAATTCATACAACAACCCTGTGAATAACAAAAATCCAAGAGTGGCAGCAGTGGCGGCAATGATTTACGGGGACAAATCTTCATTCTATCGATGTGGTTTCTTTGGTTTGCAAGACACTTTGTGGGATGGTCAAGGACGGCACTACTATCACCTTTGCACCATCCAGGGTGCCGTGGATTTTATCTTCGGCAGTGCCCAGTCTATTTTTCAGAAATGTTCGATACAAGTTCTTGGGGGAGCTCTGGATCCTGGGTCGGCTGGTTACATCACAGCACAGGGAAGAGACAATCCAAATGATGCAAGTGGGTTTGTGTTCAAGGATTGCAAGGTGTCTGGAACAGGTTCCACCTTCTTGGGCAGGGCATGGAGAGGTTACTCTAGAGTCATTTTCTACAACTCCAATTTTTCACAAGTGGTTGTGCCTCAAGGCTGGGATGCTTGGCATTTCCAAGGCAATGAGCACCAATTAACGTATGCAGAGCATGGTTGCTATGGGCCAGGAGCCGACACTGTCAAGCGTGTGGAATGGGAAAAGAAGCTTAATGCTGATACCGTGCGGGAGTTGACAAGCTTGAACTTTATTGATACTGATGGATGGCTCAATGACCAGCCTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

347

Amino Acids

38.66

Weight (kDa)

7.13

Isoelectric Point (pI)

28.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24130 AT5G18990
fragaria_vesca	FvH4_4g15880
malus_domestica	MD04G1008100.v1.1
prunus_persica	Prupe.1G006800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0415461
rosa_laevigata	RLG00000008069
rosa_multiflora	Rmu_sc0004076.1_g000023
rosa_roxburghii	Rroxscaffold_5G00359210
rosa_rugosa	Rorug04G0134400
rosa_samantha	Rh4AG194800 Rh4BG193500 Rh4CG205800 Rh4DG192500
rosa_wichuraiana	Rw4G016590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	254, 590
AciI	CCGC	2 cut(s)	476, 979
AclWI	GGATC	2 cut(s)	662, 675
AcoI	YGGCCR	1 cut(s)	166
AcsI	RAATTY	1 cut(s)	424
AdeI	CACNNNGTG	1 cut(s)	543
AgsI	TTSAA	3 cut(s)	191, 739, 997
AjnI	CCWGG	3 cut(s)	585, 670, 919
AluBI	AGCT	6 cut(s)	56, 133, 417, 662, 961, 993
AluI	AGCT	6 cut(s)	56, 133, 417, 662, 961, 993
Alw21I	GWGCWC	2 cut(s)	664, 885
Alw26I	GTCTC	1 cut(s)	699
AlwI	GGATC	2 cut(s)	662, 675
AlwNI	CAGNNNCTG	1 cut(s)	228
AoxI	GGCC	3 cut(s)	70, 166, 917
ApeKI	GCWGC	1 cut(s)	467
ApoI	RAATTY	1 cut(s)	424
Asp700I	GAANNNNTTC	1 cut(s)	763
AspS9I	GGNCC	1 cut(s)	917
AsuHPI	GGTGA	3 cut(s)	172, 283, 563
BaeGI	GKGCMC	1 cut(s)	619
BalI	TGGCCA	1 cut(s)	168
BamHI	GGATCC	1 cut(s)	667
BanI	GGYRCC	2 cut(s)	254, 590
BanII	GRGCYC	1 cut(s)	664
Bbv12I	GWGCWC	2 cut(s)	664, 885
BbvI	GCAGC	1 cut(s)	479
BccI	CCATC	6 cut(s)	155, 419, 542, 590, 1007, 1011
BceAI	ACGGC	2 cut(s)	575, 578
BcgI	CGANNNNNNTGC	2 cut(s)	341, 375
BciT130I	CCWGG	3 cut(s)	587, 672, 921
BclI	TGATCA	3 cut(s)	157, 273, 346
BcoDI	GTCTC	1 cut(s)	699
BfaI	CTAG	2 cut(s)	68, 801
BisI	GCNGC	2 cut(s)	468, 477
BlsI	GCNGC	2 cut(s)	469, 478
Bme1390I	CCNGG	3 cut(s)	587, 672, 921
BmgT120I	GGNCC	1 cut(s)	917
BmiI	GGNNCC	5 cut(s)	256, 592, 669, 766, 925
BmrFI	CCNGG	3 cut(s)	587, 672, 921
BmrI	ACTGGG	2 cut(s)	238, 613
BmsI	GCATC	4 cut(s)	13, 193, 709, 847
BmuI	ACTGGG	2 cut(s)	238, 613
BpuEI	CTTGAG	1 cut(s)	831
Bsa29I	ATCGAT	1 cut(s)	511
BsaJI	CCNNGG	6 cut(s)	73, 169, 586, 594, 671, 871
Bse1I	ACTGG	2 cut(s)	233, 619
Bse3DI	GCAATG	2 cut(s)	486, 883
BseBI	CCWGG	3 cut(s)	587, 672, 921
BseCI	ATCGAT	1 cut(s)	511
BseDI	CCNNGG	6 cut(s)	73, 169, 586, 594, 671, 871
BseGI	GGATG	6 cut(s)	276, 349, 553, 582, 862, 1022
BseMI	GCAATG	2 cut(s)	486, 883
BseMII	CTCAG	1 cut(s)	369
BseNI	ACTGG	2 cut(s)	233, 619
BseSI	GKGCMC	1 cut(s)	619
BseXI	GCAGC	1 cut(s)	479
BseYI	CCCAGC	1 cut(s)	852
BshFI	GGCC	3 cut(s)	72, 168, 919
BshNI	GGYRCC	2 cut(s)	254, 590
BshVI	ATCGAT	1 cut(s)	511
BsiHKAI	GWGCWC	2 cut(s)	664, 885
BslFI	GGGAC	1 cut(s)	506
BsmAI	GTCTC	1 cut(s)	699
BsmFI	GGGAC	1 cut(s)	506
BsnI	GGCC	3 cut(s)	72, 168, 919
Bsp1286I	GDGCHC	3 cut(s)	619, 664, 885
Bsp143I	GATC	5 cut(s)	157, 243, 273, 346, 667
Bsp19I	CCATGG	1 cut(s)	169
BspACI	CCGC	2 cut(s)	476, 979
BspANI	GGCC	3 cut(s)	72, 168, 919
BspCNI	CTCAG	1 cut(s)	368
BspDI	ATCGAT	1 cut(s)	511
BspLI	GGNNCC	5 cut(s)	256, 592, 669, 766, 925
BspPI	GGATC	2 cut(s)	662, 675
BspT107I	GGYRCC	2 cut(s)	254, 590
BsrDI	GCAATG	2 cut(s)	486, 883
BsrI	ACTGG	2 cut(s)	233, 619
BssECI	CCNNGG	6 cut(s)	73, 169, 586, 594, 671, 871
BssMI	GATC	5 cut(s)	157, 243, 273, 346, 667
BssT1I	CCWWGG	3 cut(s)	73, 169, 871
Bst2UI	CCWGG	3 cut(s)	587, 672, 921
Bst4CI	ACNGT	4 cut(s)	154, 395, 934, 976
Bst6I	CTCTTC	1 cut(s)	697
BstC8I	GCNNGC	3 cut(s)	90, 135, 253
BstDEI	CTNAG	1 cut(s)	355
BstDSI	CCRYGG	2 cut(s)	169, 594
BstF5I	GGATG	6 cut(s)	276, 349, 553, 582, 862, 1022
BstKTI	GATC	5 cut(s)	160, 246, 276, 349, 670
BstMAI	GTCTC	1 cut(s)	699
BstMBI	GATC	5 cut(s)	157, 243, 273, 346, 667
BstMWI	GCNNNNNNNGC	4 cut(s)	203, 386, 473, 476
BstNI	CCWGG	3 cut(s)	587, 672, 921
BstSCI	CCNGG	3 cut(s)	585, 670, 919
BstSLI	GKGCMC	1 cut(s)	619
BstV1I	GCAGC	1 cut(s)	479
BstX2I	RGATCY	1 cut(s)	667
BstXI	CCANNNNNNTGG	1 cut(s)	775
BstYI	RGATCY	1 cut(s)	667
Bsu15I	ATCGAT	1 cut(s)	511
BsuRI	GGCC	3 cut(s)	72, 168, 919
BsuTUI	ATCGAT	1 cut(s)	511
BtgI	CCRYGG	2 cut(s)	169, 594
BtsCI	GGATG	6 cut(s)	276, 349, 553, 582, 862, 1022
BtsI	GCAGTG	2 cut(s)	477, 619
BtsIMutI	CAGTG	4 cut(s)	150, 477, 619, 930
Cac8I	GCNNGC	3 cut(s)	90, 135, 253
CaiI	CAGNNNCTG	1 cut(s)	228
Cfr13I	GGNCC	1 cut(s)	917
ClaI	ATCGAT	1 cut(s)	511
CviAII	CATG	4 cut(s)	48, 170, 786, 905
DdeI	CTNAG	1 cut(s)	355
DpnI	GATC	5 cut(s)	159, 245, 275, 348, 669
DpnII	GATC	5 cut(s)	157, 243, 273, 346, 667
DraIII	CACNNNGTG	1 cut(s)	543
EaeI	YGGCCR	1 cut(s)	166
Eam1104I	CTCTTC	1 cut(s)	697
EarI	CTCTTC	1 cut(s)	697
Ecl136II	GAGCTC	1 cut(s)	662
Eco130I	CCWWGG	3 cut(s)	73, 169, 871
Eco147I	AGGCCT	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	664
Eco53kI	GAGCTC	1 cut(s)	662
EcoICRI	GAGCTC	1 cut(s)	662
EcoRI	GAATTC	1 cut(s)	424
EcoRII	CCWGG	3 cut(s)	585, 670, 919
EcoT14I	CCWWGG	3 cut(s)	73, 169, 871
EcoT38I	GRGCYC	1 cut(s)	664
ErhI	CCWWGG	3 cut(s)	73, 169, 871
FaeI	CATG	4 cut(s)	51, 173, 789, 908
FalI	AAGNNNNNCTT	2 cut(s)	358, 390
FaqI	GGGAC	1 cut(s)	506
FatI	CATG	4 cut(s)	47, 169, 785, 904
FauI	CCCGC	1 cut(s)	972
FbaI	TGATCA	3 cut(s)	157, 273, 346
Fnu4HI	GCNGC	2 cut(s)	468, 477
FokI	GGATG	6 cut(s)	263, 356, 560, 569, 869, 1029
FriOI	GRGCYC	1 cut(s)	664
Fsp4HI	GCNGC	2 cut(s)	468, 477
FspBI	CTAG	2 cut(s)	68, 801
GluI	GCNGC	2 cut(s)	468, 477
GsaI	CCCAGC	1 cut(s)	856
HaeIII	GGCC	3 cut(s)	72, 168, 919
Hin1II	CATG	4 cut(s)	51, 173, 789, 908
HincII	GTYRAC	2 cut(s)	286, 987
HindII	GTYRAC	2 cut(s)	286, 987
HindIII	AAGCTT	2 cut(s)	959, 991
HinfI	GANTC	2 cut(s)	353, 804
HphI	GGTGA	3 cut(s)	172, 283, 563
Hpy166II	GTNNAC	2 cut(s)	286, 987
Hpy188I	TCNGA	1 cut(s)	633
Hpy188III	TCNNGA	6 cut(s)	20, 241, 350, 665, 756, 801
Hpy8I	GTNNAC	2 cut(s)	286, 987
HpyAV	CCTTC	1 cut(s)	781
HpyCH4III	ACNGT	4 cut(s)	154, 395, 934, 976
HpyCH4IV	ACGT	1 cut(s)	893
HpyCH4V	TGCA	6 cut(s)	362, 532, 579, 722, 747, 899
HpyF10VI	GCNNNNNNNGC	4 cut(s)	203, 386, 473, 476
HpyF3I	CTNAG	1 cut(s)	355
HpySE526I	ACGT	1 cut(s)	893
Hsp92II	CATG	4 cut(s)	51, 173, 789, 908
Ksp22I	TGATCA	3 cut(s)	157, 273, 346
Kzo9I	GATC	5 cut(s)	157, 243, 273, 346, 667
LmnI	GCTCC	2 cut(s)	659, 923
Lsp1109I	GCAGC	1 cut(s)	479
LweI	GCATC	4 cut(s)	13, 193, 709, 847
MaeI	CTAG	2 cut(s)	68, 801
MaeII	ACGT	1 cut(s)	893
MaeIII	GTNAC	2 cut(s)	683, 794
MalI	GATC	5 cut(s)	159, 245, 275, 348, 669
MboI	GATC	5 cut(s)	157, 243, 273, 346, 667
MboII	GAAGA	4 cut(s)	5, 492, 598, 714
MflI	RGATCY	1 cut(s)	667
MhlI	GDGCHC	3 cut(s)	619, 664, 885
MlsI	TGGCCA	1 cut(s)	168
MluCI	AATT	5 cut(s)	175, 300, 424, 823, 887
MluNI	TGGCCA	1 cut(s)	168
MlyI	GAGTC	2 cut(s)	347, 813
MnlI	CCTC	4 cut(s)	193, 391, 785, 855
Mox20I	TGGCCA	1 cut(s)	168
MroXI	GAANNNNTTC	1 cut(s)	763
MscI	TGGCCA	1 cut(s)	168
MseI	TTAA	2 cut(s)	890, 963
MslI	CAYNNNNRTG	1 cut(s)	21
Msp20I	TGGCCA	1 cut(s)	168
MspR9I	CCNGG	3 cut(s)	587, 672, 921
MvaI	CCWGG	3 cut(s)	587, 672, 921
MwoI	GCNNNNNNNGC	4 cut(s)	203, 386, 473, 476
NcoI	CCATGG	1 cut(s)	169
NdeII	GATC	5 cut(s)	157, 243, 273, 346, 667
NlaIII	CATG	4 cut(s)	51, 173, 789, 908
NlaIV	GGNNCC	5 cut(s)	256, 592, 669, 766, 925
PceI	AGGCCT	1 cut(s)	72
PdmI	GAANNNNTTC	1 cut(s)	763
PflFI	GACNNNGTC	1 cut(s)	932
PkrI	GCNGC	2 cut(s)	469, 478
PleI	GAGTC	2 cut(s)	347, 812
PpsI	GAGTC	2 cut(s)	347, 812
Psp124BI	GAGCTC	1 cut(s)	664
Psp6I	CCWGG	3 cut(s)	585, 670, 919
PspFI	CCCAGC	1 cut(s)	852
PspGI	CCWGG	3 cut(s)	585, 670, 919
PspN4I	GGNNCC	5 cut(s)	256, 592, 669, 766, 925
PspPI	GGNCC	1 cut(s)	917
PstNI	CAGNNNCTG	1 cut(s)	228
PsuI	RGATCY	1 cut(s)	667
PsyI	GACNNNGTC	1 cut(s)	932
RseI	CAYNNNNRTG	1 cut(s)	21
SacI	GAGCTC	1 cut(s)	664
SaqAI	TTAA	2 cut(s)	890, 963
SatI	GCNGC	2 cut(s)	468, 477
Sau3AI	GATC	5 cut(s)	157, 243, 273, 346, 667
Sau96I	GGNCC	1 cut(s)	917
SchI	GAGTC	2 cut(s)	347, 813
ScrFI	CCNGG	3 cut(s)	587, 672, 921
SduI	GDGCHC	3 cut(s)	619, 664, 885
SfaNI	GCATC	4 cut(s)	13, 193, 709, 847
SmiMI	CAYNNNNRTG	1 cut(s)	21
SmlI	CTYRAG	1 cut(s)	846
SmoI	CTYRAG	1 cut(s)	846
Sse9I	AATT	5 cut(s)	175, 300, 424, 823, 887
SseBI	AGGCCT	1 cut(s)	72
SsiI	CCGC	2 cut(s)	476, 979
SspMI	CTAG	2 cut(s)	68, 801
SstI	GAGCTC	1 cut(s)	664
StuI	AGGCCT	1 cut(s)	72
StyD4I	CCNGG	3 cut(s)	585, 670, 919
StyI	CCWWGG	3 cut(s)	73, 169, 871
TaaI	ACNGT	4 cut(s)	154, 395, 934, 976
TaiI	ACGT	1 cut(s)	896
TaqI	TCGA	2 cut(s)	511, 641
TasI	AATT	5 cut(s)	175, 300, 424, 823, 887
TauI	GCSGC	1 cut(s)	479
Tru1I	TTAA	2 cut(s)	890, 963
Tru9I	TTAA	2 cut(s)	890, 963
TscAI	CASTG	4 cut(s)	157, 477, 619, 937
TseI	GCWGC	1 cut(s)	467
TspDTI	ATGAA	4 cut(s)	5, 36, 417, 492
TspRI	CASTG	4 cut(s)	157, 477, 619, 937
Tth111I	GACNNNGTC	1 cut(s)	932
XapI	RAATTY	1 cut(s)	424
XbaI	TCTAGA	1 cut(s)	800
XmnI	GAANNNNTTC	1 cut(s)	763
XspI	CTAG	2 cut(s)	68, 801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.