Prupe.1G023900_v2.0.a1

Vegetative cell wall protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0018529
Physical Location & Seq
Reverse (-)
1675744 .. 1676725
982 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G023900.1

Sequence Viewer

Length: 597 bp
ATGTCGTCCTCCATCTCTTCATTCTCATCAACTCTCATCAGACGAACGATCCCATTTTGTTCATTCACCACCTCTACTACTTCTGCAACAAGCACTCAATTTCTGTCACCCAAAAGAAAGCCCATATGGCCCCTTCTCTCCCGTGCTCTACCCGACTCGCCGGACCAGTACCCGACCAGGAGCCCACCAGAGTTTTCTCCCCCAGTTCCAGGCCGCTATGACCAGCCTTCTGCTCCTCCTGAGGTGCCTGGGATTTCCACCTCTCCGGATGTGGACACCACTCCTGTTCCGCCTCCTGAAGTGAATCCATACCCTCCACCGCTTGACCCGGATCCGAACCCGGGCCCGGATTTTCCCGTGCCTCCCTTGAAACCGCCTCCTGTGCCCGATATCCCGCCACCGTTTCCTGATAACCCGCTTCCAAAACCCGACGTAGTGCCGCCGCAACCACCTGATATTGTGCCTCCTCCCCCGCCGGAGCCCGAGATTATTCCGCCACCAGCTCCCCCGCCACCCCCAACTGGCCCGGGAAAATCTTTGGCAACCACACAAATGTTTGGACAATCCAAGTTAACCTTTGGCAAATTTTTGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

21.08

Weight (kDa)

4.71

Isoelectric Point (pI)

81.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018529)

Species Orthologous Gene IDs
prunus_persica Prupe.1G023900_v2.0.a1
pyrus_communis pycom13g17550
rosa_chinensis RchiOBHm_Chr4g0388831
rosa_laevigata RLG00000010022
rosa_multiflora Rmu_sc0000697.1_g000012 Rmu_sc0016023.1_g000003
rosa_rugosa Rorug03G0320200
rosa_samantha Rh4BG018000 Rh4CG027700 Rh4DG018600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 244
AccIII TCCGGA 1 cut(s) 265
AclWI GGATC 3 cut(s) 43, 326, 339
AcsI RAATTY 1 cut(s) 584
AcuI CTGAAG 1 cut(s) 318
AfaI GTAC 1 cut(s) 170
AfiI CCNNNNNNNGG 4 cut(s) 209, 341, 346, 521
AgsI TTSAA 1 cut(s) 370
AjnI CCWGG 3 cut(s) 176, 208, 247
AluBI AGCT 1 cut(s) 503
AluI AGCT 1 cut(s) 503
Alw21I GWGCWC 1 cut(s) 148
AlwI GGATC 3 cut(s) 43, 326, 339
Ama87I CYCGRG 3 cut(s) 340, 482, 526
Aor13HI TCCGGA 1 cut(s) 265
AoxI GGCC 4 cut(s) 128, 211, 343, 523
ApaI GGGCCC 1 cut(s) 347
ApoI RAATTY 1 cut(s) 584
AspS9I GGNCC 5 cut(s) 129, 163, 343, 344, 524
AsuC2I CCSGG 6 cut(s) 329, 341, 342, 347, 527, 528
AsuHPI GGTGA 2 cut(s) 58, 99
AvaI CYCGRG 3 cut(s) 340, 482, 526
AvaII GGWCC 1 cut(s) 163
AxyI CCTNAGG 1 cut(s) 240
BaeGI GKGCMC 2 cut(s) 347, 387
BamHI GGATCC 1 cut(s) 331
BanI GGYRCC 1 cut(s) 244
BanII GRGCYC 3 cut(s) 185, 347, 483
Bbv12I GWGCWC 1 cut(s) 148
BccI CCATC 1 cut(s) 20
BciT130I CCWGG 3 cut(s) 178, 210, 249
BcnI CCSGG 6 cut(s) 329, 341, 342, 347, 527, 528
BglI GCCNNNNNGGC 1 cut(s) 127
BisI GCNGC 3 cut(s) 214, 440, 443
BlsI GCNGC 3 cut(s) 215, 441, 444
Bme1390I CCNGG 9 cut(s) 178, 210, 249, 329, 341, 342, 347, 527, 528
Bme18I GGWCC 1 cut(s) 163
BmeT110I CYCGRG 3 cut(s) 340, 482, 526
BmgT120I GGNCC 5 cut(s) 129, 163, 343, 344, 524
BmiI GGNNCC 6 cut(s) 131, 182, 246, 333, 345, 480
BmrFI CCNGG 9 cut(s) 178, 210, 249, 329, 341, 342, 347, 527, 528
BmrI ACTGGG 1 cut(s) 197
BmuI ACTGGG 1 cut(s) 197
BpuMI CCSGG 6 cut(s) 329, 341, 342, 347, 527, 528
BsaJI CCNNGG 3 cut(s) 248, 340, 526
BsaWI WCCGGW 1 cut(s) 265
Bsc4I CCNNNNNNNGG 4 cut(s) 209, 341, 346, 521
Bse1I ACTGG 3 cut(s) 166, 203, 526
Bse21I CCTNAGG 1 cut(s) 240
BseAI TCCGGA 1 cut(s) 265
BseBI CCWGG 3 cut(s) 178, 210, 249
BseDI CCNNGG 3 cut(s) 248, 340, 526
BseGI GGATG 1 cut(s) 274
BseLI CCNNNNNNNGG 4 cut(s) 209, 341, 346, 521
BseMII CTCAG 1 cut(s) 231
BseNI ACTGG 3 cut(s) 166, 203, 526
BseRI GAGGAG 2 cut(s) 225, 456
BseSI GKGCMC 2 cut(s) 347, 387
BshFI GGCC 4 cut(s) 130, 213, 345, 525
BshNI GGYRCC 1 cut(s) 244
BsiHKAI GWGCWC 1 cut(s) 148
BsiHKCI CYCGRG 3 cut(s) 340, 482, 526
BsiSI CCGG 7 cut(s) 161, 266, 329, 341, 347, 476, 527
BslI CCNNNNNNNGG 4 cut(s) 209, 341, 346, 521
BsnI GGCC 4 cut(s) 130, 213, 345, 525
BsoBI CYCGRG 3 cut(s) 340, 482, 526
Bsp120I GGGCCC 1 cut(s) 343
Bsp1286I GDGCHC 5 cut(s) 148, 185, 347, 387, 483
Bsp13I TCCGGA 1 cut(s) 265
Bsp143I GATC 2 cut(s) 48, 331
BspANI GGCC 4 cut(s) 130, 213, 345, 525
BspCNI CTCAG 1 cut(s) 232
BspEI TCCGGA 1 cut(s) 265
BspLI GGNNCC 6 cut(s) 131, 182, 246, 333, 345, 480
BspPI GGATC 3 cut(s) 43, 326, 339
BspT107I GGYRCC 1 cut(s) 244
BsrI ACTGG 3 cut(s) 166, 203, 526
BssECI CCNNGG 3 cut(s) 248, 340, 526
BssMI GATC 2 cut(s) 48, 331
Bst2UI CCWGG 3 cut(s) 178, 210, 249
Bst4CI ACNGT 1 cut(s) 402
Bst6I CTCTTC 1 cut(s) 22
BstDEI CTNAG 1 cut(s) 240
BstF5I GGATG 1 cut(s) 274
BstKTI GATC 2 cut(s) 51, 334
BstMBI GATC 2 cut(s) 48, 331
BstMWI GCNNNNNNNGC 2 cut(s) 127, 382
BstNI CCWGG 3 cut(s) 178, 210, 249
BstSCI CCNGG 9 cut(s) 176, 208, 247, 327, 339, 340, 345, 525, 526
BstSLI GKGCMC 2 cut(s) 347, 387
BstX2I RGATCY 1 cut(s) 331
BstYI RGATCY 1 cut(s) 331
Bsu36I CCTNAGG 1 cut(s) 240
BsuRI GGCC 4 cut(s) 130, 213, 345, 525
BtsCI GGATG 1 cut(s) 274
Cfr13I GGNCC 5 cut(s) 129, 163, 343, 344, 524
Cfr9I CCCGGG 2 cut(s) 340, 526
Csp6I GTAC 1 cut(s) 169
CviJI RGCY 9 cut(s) 121, 130, 183, 213, 226, 345, 481, 503, 525
CviKI_1 RGCY 9 cut(s) 121, 130, 183, 213, 226, 345, 481, 503, 525
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 1 cut(s) 240
DpnI GATC 2 cut(s) 50, 333
DpnII GATC 2 cut(s) 48, 331
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
EciI GGCGGA 2 cut(s) 279, 483
Eco24I GRGCYC 3 cut(s) 185, 347, 483
Eco32I GATATC 1 cut(s) 391
Eco47I GGWCC 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 318
Eco81I CCTNAGG 1 cut(s) 240
Eco88I CYCGRG 3 cut(s) 340, 482, 526
EcoRII CCWGG 3 cut(s) 176, 208, 247
EcoRV GATATC 1 cut(s) 391
EcoT38I GRGCYC 3 cut(s) 185, 347, 483
FaiI YATR 4 cut(s) 125, 127, 219, 310
FalI AAGNNNNNCTT 2 cut(s) 560, 592
FauI CCCGC 4 cut(s) 402, 423, 480, 516
FauNDI CATATG 1 cut(s) 125
Fnu4HI GCNGC 3 cut(s) 214, 440, 443
FokI GGATG 1 cut(s) 281
FriOI GRGCYC 3 cut(s) 185, 347, 483
Fsp4HI GCNGC 3 cut(s) 214, 440, 443
GluI GCNGC 3 cut(s) 214, 440, 443
HaeIII GGCC 4 cut(s) 130, 213, 345, 525
HapII CCGG 7 cut(s) 161, 266, 329, 341, 347, 476, 527
HincII GTYRAC 1 cut(s) 573
HindII GTYRAC 1 cut(s) 573
HinfI GANTC 2 cut(s) 155, 304
HpaI GTTAAC 1 cut(s) 573
HpaII CCGG 7 cut(s) 161, 266, 329, 341, 347, 476, 527
HphI GGTGA 2 cut(s) 58, 99
Hpy166II GTNNAC 2 cut(s) 274, 573
Hpy188I TCNGA 2 cut(s) 41, 336
Hpy188III TCNNGA 4 cut(s) 239, 266, 296, 407
Hpy8I GTNNAC 2 cut(s) 274, 573
Hpy99I CGWCG 1 cut(s) 434
HpyAV CCTTC 2 cut(s) 143, 237
HpyCH4III ACNGT 1 cut(s) 402
HpyCH4IV ACGT 1 cut(s) 432
HpyCH4V TGCA 1 cut(s) 86
HpyF10VI GCNNNNNNNGC 2 cut(s) 127, 382
HpyF3I CTNAG 1 cut(s) 240
HpySE526I ACGT 1 cut(s) 432
Kpn2I TCCGGA 1 cut(s) 265
KspAI GTTAAC 1 cut(s) 573
Kzo9I GATC 2 cut(s) 48, 331
LmnI GCTCC 4 cut(s) 180, 238, 478, 508
MaeII ACGT 1 cut(s) 432
MaeIII GTNAC 1 cut(s) 105
MalI GATC 2 cut(s) 50, 333
MboI GATC 2 cut(s) 48, 331
MboII GAAGA 1 cut(s) 9
MflI RGATCY 1 cut(s) 331
MhlI GDGCHC 5 cut(s) 148, 185, 347, 387, 483
MluCI AATT 2 cut(s) 98, 584
MlyI GAGTC 1 cut(s) 149
MroI TCCGGA 1 cut(s) 265
MseI TTAA 1 cut(s) 572
MslI CAYNNNNRTG 1 cut(s) 551
MspI CCGG 7 cut(s) 161, 266, 329, 341, 347, 476, 527
MspR9I CCNGG 9 cut(s) 178, 210, 249, 329, 341, 342, 347, 527, 528
MvaI CCWGG 3 cut(s) 178, 210, 249
MwoI GCNNNNNNNGC 2 cut(s) 127, 382
NciI CCSGG 6 cut(s) 329, 341, 342, 347, 527, 528
NdeI CATATG 1 cut(s) 125
NdeII GATC 2 cut(s) 48, 331
NlaIV GGNNCC 6 cut(s) 131, 182, 246, 333, 345, 480
NmuCI GTSAC 1 cut(s) 105
PfeI GAWTC 1 cut(s) 304
PkrI GCNGC 3 cut(s) 215, 441, 444
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
Psp6I CCWGG 3 cut(s) 176, 208, 247
PspGI CCWGG 3 cut(s) 176, 208, 247
PspN4I GGNNCC 6 cut(s) 131, 182, 246, 333, 345, 480
PspOMI GGGCCC 1 cut(s) 343
PspPI GGNCC 5 cut(s) 129, 163, 343, 344, 524
PsuI RGATCY 1 cut(s) 331
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
RseI CAYNNNNRTG 1 cut(s) 551
SaqAI TTAA 1 cut(s) 572
SatI GCNGC 3 cut(s) 214, 440, 443
Sau3AI GATC 2 cut(s) 48, 331
Sau96I GGNCC 5 cut(s) 129, 163, 343, 344, 524
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 9 cut(s) 178, 210, 249, 329, 341, 342, 347, 527, 528
SduI GDGCHC 5 cut(s) 148, 185, 347, 387, 483
SetI ASST 7 cut(s) 74, 246, 263, 435, 454, 505, 578
SinI GGWCC 1 cut(s) 163
SmaI CCCGGG 2 cut(s) 342, 528
SmiMI CAYNNNNRTG 1 cut(s) 551
Sse9I AATT 2 cut(s) 98, 584
StyD4I CCNGG 9 cut(s) 176, 208, 247, 327, 339, 340, 345, 525, 526
TaaI ACNGT 1 cut(s) 402
TaiI ACGT 1 cut(s) 435
TasI AATT 2 cut(s) 98, 584
TauI GCSGC 3 cut(s) 216, 442, 445
TfiI GAWTC 1 cut(s) 304
Tru1I TTAA 1 cut(s) 572
Tru9I TTAA 1 cut(s) 572
TseFI GTSAC 1 cut(s) 105
Tsp45I GTSAC 1 cut(s) 105
TspDTI ATGAA 2 cut(s) 9, 51
TspMI CCCGGG 2 cut(s) 340, 526
VpaK11BI GGWCC 1 cut(s) 163
XapI RAATTY 1 cut(s) 584
XmaI CCCGGG 2 cut(s) 340, 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.