Rmu_sc0016023.1_g000003

DNA polymerase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016023.1
Physical Location & Seq
Reverse (-)
16432 .. 21031
4600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016023.1_g000003.1.cds

Sequence Viewer

Length: 1494 bp
atggaagatgctgctttgggtcttgtggaaacttctgagttattgtggaagagggactcgagcatcttctcctttcagccagtcagttgctgcaccttcatctcgtcatcttttagtcgagtctcaattcccacgggtttggcccgtgttcacgccactctccgcttttgggagggagatgggtggcggtgttgtggtttgggggacccaaaccagatatgggatcccggccctattgtctggtggcggttagttgctgtgcgtcgagcacttggacgtaagagttcgtcttggcttcaggcggtgtcgaggatgcaaggtccccaggtcaaggtactacgtcgactgacgatggtgccaagtcctcccagagaagggtcttccgatctatggagcggcggaataggacgaggtgtgttggggctgattgaggttggttgtggcggcgctgtgagttcttccacttgcgactttcgatggctgcagcgggagcgtagacgtttgggacccggattgcatttaaatccggatcttggatccgagacagttgctcatattgatctggtattggttctggttcttaggaaggcagcgacgtactggcaacctgtactgatcgaaaacgccgacgaccggttccagatcaagatggagaagccgatctacgacacggtcgacgaagacgagtatgacgcgatcatcgccaagcgccgcgaggagttcggggactttatagaggacgacgacagcctagggtactgcgacgacgacgaggaagaggactggcttcctacgtcgtcggatgaatcagacgacaatatgaggcccaggaggaggaagaaggtggagaaggagccgcggcccaaaaagcccaattcttcgcttacggcggcggtggcgatgatggggaagcagaggctttcgtcgactgaacgactaaacagaggaggaggaggaagaggaagaggaagaagaagaagaagaagaggaggagagagaaaattgttatccaaaacaagtactagcaccagtacccctccattgttattgtcactcaagaaccctatctttcccactcaacctcagattttagtccatgctcgattatctgactcacccaacgagtatccaactcggagcccgccggagttttctcctcgggtgccgggttttgaccggccttctgttccacccgaagtacctggaatatctacctctccggaagttgacatcccaacaactactccacctgaggtcagcccttatcctccaccacttgaccccggtccgaacccgggtccggattttccagtacctcctttgaagccacctcctgttccggatgtgccacgtccttttccagataacccaattccaggacctgacagactgccgccgcagccaccggatatagtgcctccaccgcctcctgggcctgagattattccaccgccagcaccgcctaccggtccaggagggcctattgttgtctaa

Protein Analysis

497

Amino Acids

54.76

Weight (kDa)

6.51

Isoelectric Point (pI)

71.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018529)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 355, 1162
AccBSI CCGCTC 1 cut(s) 396
AccI GTMKAC 4 cut(s) 343, 496, 675, 926
AccII CGCG 3 cut(s) 695, 714, 859
AccIII TCCGGA 4 cut(s) 526, 1219, 1300, 1339
AclWI GGATC 5 cut(s) 218, 231, 531, 537, 544
AcuI CTGAAG 1 cut(s) 281
AfaI GTAC 8 cut(s) 336, 599, 612, 758, 1021, 1033, 1200, 1314
AgeI ACCGGT 2 cut(s) 633, 1466
AgsI TTSAA 1 cut(s) 1324
AjiI CACGTC 1 cut(s) 1352
AjnI CCWGG 6 cut(s) 324, 827, 1201, 1375, 1429, 1471
Alw21I GWGCWC 1 cut(s) 271
Alw26I GTCTC 2 cut(s) 127, 536
AlwI GGATC 5 cut(s) 218, 231, 531, 537, 544
AlwNI CAGNNNCTG 2 cut(s) 90, 1382
Ama87I CYCGRG 3 cut(s) 58, 1158, 1294
Aor13HI TCCGGA 4 cut(s) 526, 1219, 1300, 1339
AoxI GGCC 7 cut(s) 141, 229, 824, 860, 1178, 1433, 1478
ApeKI GCWGC 6 cut(s) 11, 90, 481, 484, 590, 1399
AsiGI ACCGGT 2 cut(s) 633, 1466
AspA2I CCTAGG 1 cut(s) 751
AspLEI GCGC 2 cut(s) 449, 711
AsuC2I CCSGG 6 cut(s) 228, 510, 1167, 1284, 1295, 1296
AsuHPI GGTGA 1 cut(s) 1107
AvaI CYCGRG 3 cut(s) 58, 1158, 1294
AvaII GGWCC 7 cut(s) 205, 320, 506, 1286, 1298, 1379, 1469
AvrII CCTAGG 1 cut(s) 751
AxyI CCTNAGG 1 cut(s) 1251
BamHI GGATCC 2 cut(s) 223, 536
BanI GGYRCC 2 cut(s) 355, 1162
BanII GRGCYC 1 cut(s) 1142
BarI GAAGNNNNNNTAC 2 cut(s) 647, 679
BbsI GAAGAC 2 cut(s) 372, 687
Bbv12I GWGCWC 1 cut(s) 271
BbvI GCAGC 5 cut(s) 77, 468, 496, 602, 1411
BccI CCATC 5 cut(s) 173, 346, 471, 643, 898
BceAI ACGGC 1 cut(s) 903
BcgI CGANNNNNNTGC 2 cut(s) 530, 564
BciT130I CCWGG 6 cut(s) 326, 829, 1203, 1377, 1431, 1473
BciVI GTATCC 1 cut(s) 1137
BcnI CCSGG 6 cut(s) 228, 510, 1167, 1284, 1295, 1296
BcoDI GTCTC 2 cut(s) 127, 536
BfaI CTAG 2 cut(s) 752, 1023
BfmI CTRYAG 1 cut(s) 482
BfoI RGCGCY 2 cut(s) 450, 712
BfuI GTATCC 1 cut(s) 1137
BglI GCCNNNNNGGC 1 cut(s) 1432
BlnI CCTAGG 1 cut(s) 751
BmcAI AGTACT 1 cut(s) 1021
Bme18I GGWCC 7 cut(s) 205, 320, 506, 1286, 1298, 1379, 1469
BmeT110I CYCGRG 3 cut(s) 58, 1158, 1294
BmgBI CACGTC 1 cut(s) 1352
BmsI GCATC 2 cut(s) 72, 303
BoxI GACNNNNGTC 1 cut(s) 1284
BpiI GAAGAC 2 cut(s) 372, 687
BpuEI CTTGAG 1 cut(s) 1040
BpuMI CCSGG 6 cut(s) 228, 510, 1167, 1284, 1295, 1296
BsaJI CCNNGG 9 cut(s) 132, 324, 751, 827, 857, 1157, 1282, 1294, 1430
BsaWI WCCGGW 7 cut(s) 526, 633, 1219, 1300, 1339, 1405, 1466
BsaXI ACNNNNNCTCC 2 cut(s) 1228, 1258
Bse118I RCCGGY 3 cut(s) 633, 1176, 1466
Bse1I ACTGG 5 cut(s) 80, 605, 788, 1029, 1310
Bse21I CCTNAGG 1 cut(s) 1251
BseAI TCCGGA 4 cut(s) 526, 1219, 1300, 1339
BseBI CCWGG 6 cut(s) 326, 829, 1203, 1377, 1431, 1473
BseDI CCNNGG 9 cut(s) 132, 324, 751, 827, 857, 1157, 1282, 1294, 1430
BseGI GGATG 4 cut(s) 318, 808, 1230, 1348
BseMII CTCAG 4 cut(s) 27, 1097, 1242, 1428
BseNI ACTGG 5 cut(s) 80, 605, 788, 1029, 1310
BseRI GAGGAG 8 cut(s) 731, 847, 960, 963, 966, 1002, 1005, 1146
BseXI GCAGC 5 cut(s) 77, 468, 496, 602, 1411
BsgI GTGCAG 1 cut(s) 76
Bsh1236I CGCG 3 cut(s) 695, 714, 859
Bsh1285I CGRYCG 2 cut(s) 634, 675
BshFI GGCC 7 cut(s) 143, 231, 826, 862, 1180, 1435, 1480
BshNI GGYRCC 2 cut(s) 355, 1162
BshTI ACCGGT 2 cut(s) 633, 1466
BsiEI CGRYCG 2 cut(s) 634, 675
BsiHKAI GWGCWC 1 cut(s) 271
BsiHKCI CYCGRG 3 cut(s) 58, 1158, 1294
BslFI GGGAC 5 cut(s) 68, 218, 306, 519, 740
BsmAI GTCTC 2 cut(s) 127, 536
BsmFI GGGAC 5 cut(s) 68, 218, 306, 519, 740
BsnI GGCC 7 cut(s) 143, 231, 826, 862, 1180, 1435, 1480
BsoBI CYCGRG 3 cut(s) 58, 1158, 1294
Bsp1286I GDGCHC 2 cut(s) 271, 1142
Bsp13I TCCGGA 4 cut(s) 526, 1219, 1300, 1339
Bsp143I GATC 9 cut(s) 223, 385, 529, 536, 559, 615, 642, 660, 696
BspANI GGCC 7 cut(s) 143, 231, 826, 862, 1180, 1435, 1480
BspCNI CTCAG 4 cut(s) 28, 1096, 1243, 1429
BspEI TCCGGA 4 cut(s) 526, 1219, 1300, 1339
BspFNI CGCG 3 cut(s) 695, 714, 859
BspMAI CTGCAG 1 cut(s) 486
BspPI GGATC 5 cut(s) 218, 231, 531, 537, 544
BspT107I GGYRCC 2 cut(s) 355, 1162
BsrBI CCGCTC 1 cut(s) 396
BsrFI RCCGGY 3 cut(s) 633, 1176, 1466
BsrI ACTGG 5 cut(s) 80, 605, 788, 1029, 1310
BssAI RCCGGY 3 cut(s) 633, 1176, 1466
BssECI CCNNGG 9 cut(s) 132, 324, 751, 827, 857, 1157, 1282, 1294, 1430
BssMI GATC 9 cut(s) 223, 385, 529, 536, 559, 615, 642, 660, 696
BssT1I CCWWGG 1 cut(s) 751
Bst2UI CCWGG 6 cut(s) 326, 829, 1203, 1377, 1431, 1473
Bst4CI ACNGT 2 cut(s) 547, 673
Bst6I CTCTTC 5 cut(s) 44, 771, 952, 958, 979
BstC8I GCNNGC 2 cut(s) 1142, 1455
BstDEI CTNAG 5 cut(s) 36, 581, 1083, 1251, 1437
BstDSI CCRYGG 2 cut(s) 132, 857
BstF5I GGATG 4 cut(s) 318, 808, 1230, 1348
BstFNI CGCG 3 cut(s) 695, 714, 859
BstH2I RGCGCY 2 cut(s) 450, 712
BstHHI GCGC 2 cut(s) 449, 711
BstKTI GATC 9 cut(s) 226, 388, 532, 539, 562, 618, 645, 663, 699
BstMAI GTCTC 2 cut(s) 127, 536
BstMBI GATC 9 cut(s) 223, 385, 529, 536, 559, 615, 642, 660, 696
BstMCI CGRYCG 2 cut(s) 634, 675
BstMWI GCNNNNNNNGC 8 cut(s) 490, 701, 868, 896, 1399, 1423, 1432, 1459
BstNI CCWGG 6 cut(s) 326, 829, 1203, 1377, 1431, 1473
BstPAI GACNNNNGTC 1 cut(s) 1284
BstSFI CTRYAG 1 cut(s) 482
BstUI CGCG 3 cut(s) 695, 714, 859
BstV1I GCAGC 5 cut(s) 77, 468, 496, 602, 1411
BstV2I GAAGAC 2 cut(s) 372, 687
BstX2I RGATCY 3 cut(s) 223, 529, 536
BstXI CCANNNNNNTGG 1 cut(s) 139
BstYI RGATCY 3 cut(s) 223, 529, 536
Bsu36I CCTNAGG 1 cut(s) 1251
BsuI GTATCC 1 cut(s) 1137
BsuRI GGCC 7 cut(s) 143, 231, 826, 862, 1180, 1435, 1480
BtgI CCRYGG 2 cut(s) 132, 857
BtgZI GCGATG 2 cut(s) 685, 914
BtrI CACGTC 1 cut(s) 1352
BtsCI GGATG 4 cut(s) 318, 808, 1230, 1348
Cac8I GCNNGC 2 cut(s) 1142, 1455
CaiI CAGNNNCTG 2 cut(s) 90, 1382
CfoI GCGC 2 cut(s) 449, 711
Cfr10I RCCGGY 3 cut(s) 633, 1176, 1466
Cfr42I CCGCGG 1 cut(s) 860
Cfr9I CCCGGG 1 cut(s) 1294
CpoI CGGWCCG 1 cut(s) 1286
CseI GACGC 2 cut(s) 251, 701
Csp6I GTAC 8 cut(s) 335, 598, 611, 757, 1020, 1032, 1199, 1313
CspAI ACCGGT 2 cut(s) 633, 1466
CspI CGGWCCG 1 cut(s) 1286
CviAII CATG 1 cut(s) 1097
CviQI GTAC 8 cut(s) 335, 598, 611, 757, 1020, 1032, 1199, 1313
DdeI CTNAG 5 cut(s) 36, 581, 1083, 1251, 1437
DpnI GATC 9 cut(s) 225, 387, 531, 538, 561, 617, 644, 662, 698
DpnII GATC 9 cut(s) 223, 385, 529, 536, 559, 615, 642, 660, 696
DraI TTTAAA 1 cut(s) 522
Eam1104I CTCTTC 5 cut(s) 44, 771, 952, 958, 979
EarI CTCTTC 5 cut(s) 44, 771, 952, 958, 979
EciI GGCGGA 1 cut(s) 414
Eco130I CCWWGG 1 cut(s) 751
Eco24I GRGCYC 1 cut(s) 1142
Eco47I GGWCC 7 cut(s) 205, 320, 506, 1286, 1298, 1379, 1469
Eco57I CTGAAG 1 cut(s) 281
Eco81I CCTNAGG 1 cut(s) 1251
Eco88I CYCGRG 3 cut(s) 58, 1158, 1294
EcoO109I RGGNCCY 5 cut(s) 205, 320, 506, 1379, 1478
EcoRII CCWGG 6 cut(s) 324, 827, 1201, 1375, 1429, 1471
EcoT14I CCWWGG 1 cut(s) 751
EcoT38I GRGCYC 1 cut(s) 1142
ErhI CCWWGG 1 cut(s) 751
FaeI CATG 1 cut(s) 1100
FaiI YATR 8 cut(s) 220, 391, 555, 690, 734, 821, 1098, 1412
FaqI GGGAC 5 cut(s) 68, 218, 306, 519, 740
FatI CATG 1 cut(s) 1096
FauI CCCGC 2 cut(s) 480, 1149
FblI GTMKAC 4 cut(s) 343, 496, 675, 926
FokI GGATG 4 cut(s) 325, 815, 1217, 1355
FriOI GRGCYC 1 cut(s) 1142
FspBI CTAG 2 cut(s) 752, 1023
GlaI GCGC 2 cut(s) 448, 710
HaeII RGCGCY 2 cut(s) 450, 712
HaeIII GGCC 7 cut(s) 143, 231, 826, 862, 1180, 1435, 1480
HgaI GACGC 2 cut(s) 251, 701
HhaI GCGC 2 cut(s) 449, 711
Hin1II CATG 1 cut(s) 1100
Hin6I GCGC 2 cut(s) 447, 709
HinP1I GCGC 2 cut(s) 447, 709
HincII GTYRAC 4 cut(s) 344, 676, 927, 1228
HindII GTYRAC 4 cut(s) 344, 676, 927, 1228
HinfI GANTC 4 cut(s) 56, 120, 806, 1112
HphI GGTGA 1 cut(s) 1107
Hpy166II GTNNAC 6 cut(s) 151, 344, 497, 676, 927, 1228
Hpy188I TCNGA 9 cut(s) 37, 385, 541, 802, 811, 1086, 1111, 1137, 1290
Hpy188III TCNNGA 8 cut(s) 527, 640, 646, 1057, 1220, 1301, 1340, 1361
Hpy8I GTNNAC 6 cut(s) 151, 344, 497, 676, 927, 1228
HpyAV CCTTC 6 cut(s) 106, 368, 580, 835, 844, 1191
HpyCH4III ACNGT 2 cut(s) 547, 673
HpyCH4IV ACGT 6 cut(s) 277, 340, 499, 596, 794, 1351
HpyCH4V TGCA 4 cut(s) 93, 316, 484, 517
HpyF10VI GCNNNNNNNGC 8 cut(s) 490, 701, 868, 896, 1399, 1423, 1432, 1459
HpyF3I CTNAG 5 cut(s) 36, 581, 1083, 1251, 1437
HpySE526I ACGT 6 cut(s) 277, 340, 499, 596, 794, 1351
Hsp92II CATG 1 cut(s) 1100
HspAI GCGC 2 cut(s) 447, 709
KflI GGGWCCC 2 cut(s) 205, 506
Kpn2I TCCGGA 4 cut(s) 526, 1219, 1300, 1339
KspI CCGCGG 1 cut(s) 860
Kzo9I GATC 9 cut(s) 223, 385, 529, 536, 559, 615, 642, 660, 696
LmnI GCTCC 4 cut(s) 393, 490, 853, 1137
Lsp1109I GCAGC 5 cut(s) 77, 468, 496, 602, 1411
LweI GCATC 2 cut(s) 72, 303
MaeI CTAG 2 cut(s) 752, 1023
MaeII ACGT 6 cut(s) 277, 340, 499, 596, 794, 1351
MaeIII GTNAC 1 cut(s) 1050
MalI GATC 9 cut(s) 225, 387, 531, 538, 561, 617, 644, 662, 698
MbiI CCGCTC 1 cut(s) 396
MboI GATC 9 cut(s) 223, 385, 529, 536, 559, 615, 642, 660, 696
MflI RGATCY 3 cut(s) 223, 529, 536
MhlI GDGCHC 2 cut(s) 271, 1142
MluCI AATT 4 cut(s) 126, 874, 1001, 1371
MlyI GAGTC 3 cut(s) 50, 129, 1106
MmeI TCCRAC 2 cut(s) 780, 1154
MroI TCCGGA 4 cut(s) 526, 1219, 1300, 1339
MseI TTAA 1 cut(s) 521
MspA1I CMGCKG 2 cut(s) 487, 859
MvaI CCWGG 6 cut(s) 326, 829, 1203, 1377, 1431, 1473
MvnI CGCG 3 cut(s) 695, 714, 859
MwoI GCNNNNNNNGC 8 cut(s) 490, 701, 868, 896, 1399, 1423, 1432, 1459
NciI CCSGG 6 cut(s) 228, 510, 1167, 1284, 1295, 1296
NdeII GATC 9 cut(s) 223, 385, 529, 536, 559, 615, 642, 660, 696
NlaIII CATG 1 cut(s) 1100
NmuCI GTSAC 1 cut(s) 1050
PaeR7I CTCGAG 1 cut(s) 58
PcsI WCGNNNNNNNCGW 3 cut(s) 624, 672, 681
PfeI GAWTC 1 cut(s) 806
PflFI GACNNNGTC 1 cut(s) 671
PfoI TCCNGGA 2 cut(s) 1375, 1471
PinAI ACCGGT 2 cut(s) 633, 1466
PleI GAGTC 3 cut(s) 50, 128, 1106
PpsI GAGTC 3 cut(s) 50, 128, 1106
PpuMI RGGWCCY 4 cut(s) 205, 320, 506, 1379
PshAI GACNNNNGTC 1 cut(s) 1284
Psp5II RGGWCCY 4 cut(s) 205, 320, 506, 1379
Psp6I CCWGG 6 cut(s) 324, 827, 1201, 1375, 1429, 1471
PspGI CCWGG 6 cut(s) 324, 827, 1201, 1375, 1429, 1471
PspPPI RGGWCCY 4 cut(s) 205, 320, 506, 1379
PspXI VCTCGAGB 1 cut(s) 58
PstI CTGCAG 1 cut(s) 486
PstNI CAGNNNCTG 2 cut(s) 90, 1382
PsuI RGATCY 3 cut(s) 223, 529, 536
PsyI GACNNNGTC 1 cut(s) 671
RsaI GTAC 8 cut(s) 336, 599, 612, 758, 1021, 1033, 1200, 1314
RsaNI GTAC 8 cut(s) 335, 598, 611, 757, 1020, 1032, 1199, 1313
Rsr2I CGGWCCG 1 cut(s) 1286
RsrII CGGWCCG 1 cut(s) 1286
SacII CCGCGG 1 cut(s) 860
SalI GTCGAC 3 cut(s) 342, 674, 925
SaqAI TTAA 1 cut(s) 521
Sau3AI GATC 9 cut(s) 223, 385, 529, 536, 559, 615, 642, 660, 696
ScaI AGTACT 1 cut(s) 1021
SchI GAGTC 3 cut(s) 50, 129, 1106
SduI GDGCHC 2 cut(s) 271, 1142
SfaNI GCATC 2 cut(s) 72, 303
SfcI CTRYAG 1 cut(s) 482
Sfr274I CTCGAG 1 cut(s) 58
Sfr303I CCGCGG 1 cut(s) 860
SgrBI CCGCGG 1 cut(s) 860
SinI GGWCC 7 cut(s) 205, 320, 506, 1286, 1298, 1379, 1469
SlaI CTCGAG 1 cut(s) 58
SmaI CCCGGG 1 cut(s) 1296
SmiI ATTTAAAT 1 cut(s) 522
SmlI CTYRAG 2 cut(s) 58, 1055
SmoI CTYRAG 2 cut(s) 58, 1055
Sse9I AATT 4 cut(s) 126, 874, 1001, 1371
SspMI CTAG 2 cut(s) 752, 1023
StyI CCWWGG 1 cut(s) 751
SwaI ATTTAAAT 1 cut(s) 522
TaaI ACNGT 2 cut(s) 547, 673
TaiI ACGT 6 cut(s) 280, 343, 502, 599, 797, 1354
TasI AATT 4 cut(s) 126, 874, 1001, 1371
TatI WGTACW 2 cut(s) 610, 1019
TauI GCSGC 8 cut(s) 399, 447, 714, 859, 862, 893, 1396, 1399
TfiI GAWTC 1 cut(s) 806
Tru1I TTAA 1 cut(s) 521
Tru9I TTAA 1 cut(s) 521
TseFI GTSAC 1 cut(s) 1050
TseI GCWGC 6 cut(s) 11, 90, 481, 484, 590, 1399
Tsp45I GTSAC 1 cut(s) 1050
TspDTI ATGAA 2 cut(s) 88, 819
TspMI CCCGGG 1 cut(s) 1294
Tth111I GACNNNGTC 1 cut(s) 671
VpaK11BI GGWCC 7 cut(s) 205, 320, 506, 1286, 1298, 1379, 1469
XcmI CCANNNNNNNNNTGG 1 cut(s) 216
XhoI CTCGAG 1 cut(s) 58
XmaI CCCGGG 1 cut(s) 1294
XmaJI CCTAGG 1 cut(s) 751
XmiI GTMKAC 4 cut(s) 343, 496, 675, 926
XspI CTAG 2 cut(s) 752, 1023
ZrmI AGTACT 1 cut(s) 1021
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.