Rmu_sc0000697.1_g000012

Vegetative cell wall protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000697.1
OG0018529
Physical Location & Seq
Forward (+)
102180 .. 102740
561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000697.1_g000012.1.cds

Sequence Viewer

Length: 561 bp
atgtcgtccatctctgcaatctcattcacactcataaaacgaaccattccactttgctcagtatccaaaacaagtactagcaccagtacccctccattgttattgtcactcaagaaccctttctttcccactcaacctcagattttagtccatgctcgattatctgactctcccaacgagtatccaactcggagcccgccggagttttctcctcgggtgccgggttttgactggccttctgttccacccgaagtacctggaatatcaacctctccggaagttgacatcccaacaactactccacctgaggtcagcccttatcctccaccacttgacccaggtccgaacccgggtccggattttccagtacctcctttgaagccacctcctgttccggatgtgccacgtccttttccagataacccaattccaggacctgacagactgccgccgcagccaccggatatagtgcctccaccgcctcctgggcctgagattattccaccgccagcaccgcctagctaccggtccaggctggcctattgttgtctaaagttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

19.98

Weight (kDa)

5.32

Isoelectric Point (pI)

76.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018529)

Species Orthologous Gene IDs
prunus_persica Prupe.1G023900_v2.0.a1
pyrus_communis pycom13g17550
rosa_chinensis RchiOBHm_Chr4g0388831
rosa_laevigata RLG00000010022
rosa_multiflora Rmu_sc0000697.1_g000012 Rmu_sc0016023.1_g000003
rosa_rugosa Rorug03G0320200
rosa_samantha Rh4BG018000 Rh4CG027700 Rh4DG018600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 217
AccIII TCCGGA 3 cut(s) 274, 355, 394
AciI CCGC 6 cut(s) 197, 449, 452, 479, 506, 515
AfaI GTAC 4 cut(s) 76, 88, 255, 369
AfiI CCNNNNNNNGG 4 cut(s) 350, 355, 431, 485
AgeI ACCGGT 1 cut(s) 525
AgsI TTSAA 1 cut(s) 379
AjiI CACGTC 1 cut(s) 407
AjnI CCWGG 5 cut(s) 256, 337, 430, 484, 530
AluBI AGCT 1 cut(s) 522
AluI AGCT 1 cut(s) 522
AlwNI CAGNNNCTG 1 cut(s) 437
Ama87I CYCGRG 2 cut(s) 213, 349
Aor13HI TCCGGA 3 cut(s) 274, 355, 394
AoxI GGCC 3 cut(s) 233, 488, 537
ApeKI GCWGC 1 cut(s) 454
AsiGI ACCGGT 1 cut(s) 525
Asp700I GAANNNNTTC 1 cut(s) 119
AspS9I GGNCC 5 cut(s) 341, 353, 434, 488, 528
AsuC2I CCSGG 3 cut(s) 222, 350, 351
AvaI CYCGRG 2 cut(s) 213, 349
AvaII GGWCC 4 cut(s) 341, 353, 434, 528
AxyI CCTNAGG 1 cut(s) 306
BanI GGYRCC 1 cut(s) 217
BanII GRGCYC 1 cut(s) 197
BbvI GCAGC 1 cut(s) 466
BccI CCATC 1 cut(s) 17
BciT130I CCWGG 5 cut(s) 258, 339, 432, 486, 532
BciVI GTATCC 2 cut(s) 73, 192
BcnI CCSGG 3 cut(s) 222, 350, 351
BfaI CTAG 2 cut(s) 78, 519
BfuI GTATCC 2 cut(s) 73, 192
BglI GCCNNNNNGGC 1 cut(s) 487
BisI GCNGC 3 cut(s) 449, 452, 455
BlsI GCNGC 3 cut(s) 450, 453, 456
BmcAI AGTACT 1 cut(s) 76
Bme1390I CCNGG 8 cut(s) 222, 258, 339, 350, 351, 432, 486, 532
Bme18I GGWCC 4 cut(s) 341, 353, 434, 528
BmeT110I CYCGRG 2 cut(s) 213, 349
BmgBI CACGTC 1 cut(s) 407
BmgT120I GGNCC 5 cut(s) 341, 353, 434, 488, 528
BmiI GGNNCC 3 cut(s) 194, 219, 354
BmrFI CCNGG 8 cut(s) 222, 258, 339, 350, 351, 432, 486, 532
BoxI GACNNNNGTC 1 cut(s) 339
BpuEI CTTGAG 1 cut(s) 95
BpuMI CCSGG 3 cut(s) 222, 350, 351
BsaJI CCNNGG 4 cut(s) 212, 337, 349, 485
BsaWI WCCGGW 5 cut(s) 274, 355, 394, 460, 525
BsaXI ACNNNNNCTCC 2 cut(s) 283, 313
Bsc4I CCNNNNNNNGG 4 cut(s) 350, 355, 431, 485
Bse118I RCCGGY 1 cut(s) 525
Bse1I ACTGG 3 cut(s) 84, 236, 365
Bse21I CCTNAGG 1 cut(s) 306
BseAI TCCGGA 3 cut(s) 274, 355, 394
BseBI CCWGG 5 cut(s) 258, 339, 432, 486, 532
BseDI CCNNGG 4 cut(s) 212, 337, 349, 485
BseGI GGATG 2 cut(s) 285, 403
BseLI CCNNNNNNNGG 4 cut(s) 350, 355, 431, 485
BseMII CTCAG 4 cut(s) 72, 152, 297, 483
BseNI ACTGG 3 cut(s) 84, 236, 365
BseRI GAGGAG 1 cut(s) 201
BseXI GCAGC 1 cut(s) 466
BshFI GGCC 3 cut(s) 235, 490, 539
BshNI GGYRCC 1 cut(s) 217
BshTI ACCGGT 1 cut(s) 525
BsiHKCI CYCGRG 2 cut(s) 213, 349
BsiSI CCGG 8 cut(s) 200, 221, 275, 350, 356, 395, 461, 526
BslI CCNNNNNNNGG 4 cut(s) 350, 355, 431, 485
BsnI GGCC 3 cut(s) 235, 490, 539
BsoBI CYCGRG 2 cut(s) 213, 349
Bsp1286I GDGCHC 1 cut(s) 197
Bsp13I TCCGGA 3 cut(s) 274, 355, 394
BspACI CCGC 6 cut(s) 197, 449, 452, 479, 506, 515
BspANI GGCC 3 cut(s) 235, 490, 539
BspCNI CTCAG 4 cut(s) 71, 151, 298, 484
BspEI TCCGGA 3 cut(s) 274, 355, 394
BspLI GGNNCC 3 cut(s) 194, 219, 354
BspT107I GGYRCC 1 cut(s) 217
BsrFI RCCGGY 1 cut(s) 525
BsrI ACTGG 3 cut(s) 84, 236, 365
BssAI RCCGGY 1 cut(s) 525
BssECI CCNNGG 4 cut(s) 212, 337, 349, 485
Bst2UI CCWGG 5 cut(s) 258, 339, 432, 486, 532
BstC8I GCNNGC 3 cut(s) 197, 510, 537
BstDEI CTNAG 4 cut(s) 58, 138, 306, 492
BstF5I GGATG 2 cut(s) 285, 403
BstMWI GCNNNNNNNGC 4 cut(s) 454, 478, 487, 514
BstNI CCWGG 5 cut(s) 258, 339, 432, 486, 532
BstPAI GACNNNNGTC 1 cut(s) 339
BstSCI CCNGG 8 cut(s) 220, 256, 337, 348, 349, 430, 484, 530
BstV1I GCAGC 1 cut(s) 466
Bsu36I CCTNAGG 1 cut(s) 306
BsuI GTATCC 2 cut(s) 73, 192
BsuRI GGCC 3 cut(s) 235, 490, 539
BtrI CACGTC 1 cut(s) 407
BtsCI GGATG 2 cut(s) 285, 403
Cac8I GCNNGC 3 cut(s) 197, 510, 537
CaiI CAGNNNCTG 1 cut(s) 437
Cfr10I RCCGGY 1 cut(s) 525
Cfr13I GGNCC 5 cut(s) 341, 353, 434, 488, 528
Cfr9I CCCGGG 1 cut(s) 349
Csp6I GTAC 4 cut(s) 75, 87, 254, 368
CspAI ACCGGT 1 cut(s) 525
CviAII CATG 1 cut(s) 152
CviJI RGCY 9 cut(s) 195, 235, 315, 382, 457, 490, 522, 535, 539
CviKI_1 RGCY 9 cut(s) 195, 235, 315, 382, 457, 490, 522, 535, 539
CviQI GTAC 4 cut(s) 75, 87, 254, 368
DdeI CTNAG 4 cut(s) 58, 138, 306, 492
Eco24I GRGCYC 1 cut(s) 197
Eco47I GGWCC 4 cut(s) 341, 353, 434, 528
Eco81I CCTNAGG 1 cut(s) 306
Eco88I CYCGRG 2 cut(s) 213, 349
EcoO109I RGGNCCY 1 cut(s) 434
EcoRII CCWGG 5 cut(s) 256, 337, 430, 484, 530
EcoT38I GRGCYC 1 cut(s) 197
FaeI CATG 1 cut(s) 155
FaiI YATR 3 cut(s) 35, 153, 467
FatI CATG 1 cut(s) 151
FauI CCCGC 1 cut(s) 204
Fnu4HI GCNGC 3 cut(s) 449, 452, 455
FokI GGATG 2 cut(s) 272, 410
FriOI GRGCYC 1 cut(s) 197
Fsp4HI GCNGC 3 cut(s) 449, 452, 455
FspBI CTAG 2 cut(s) 78, 519
GluI GCNGC 3 cut(s) 449, 452, 455
HaeIII GGCC 3 cut(s) 235, 490, 539
HapII CCGG 8 cut(s) 200, 221, 275, 350, 356, 395, 461, 526
Hin1II CATG 1 cut(s) 155
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HinfI GANTC 1 cut(s) 167
HpaII CCGG 8 cut(s) 200, 221, 275, 350, 356, 395, 461, 526
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 4 cut(s) 141, 166, 192, 345
Hpy188III TCNNGA 5 cut(s) 112, 275, 356, 395, 416
Hpy8I GTNNAC 1 cut(s) 283
HpyAV CCTTC 1 cut(s) 246
HpyCH4IV ACGT 1 cut(s) 406
HpyCH4V TGCA 1 cut(s) 17
HpyF10VI GCNNNNNNNGC 4 cut(s) 454, 478, 487, 514
HpyF3I CTNAG 4 cut(s) 58, 138, 306, 492
HpySE526I ACGT 1 cut(s) 406
Hsp92II CATG 1 cut(s) 155
Kpn2I TCCGGA 3 cut(s) 274, 355, 394
LmnI GCTCC 1 cut(s) 192
Lsp1109I GCAGC 1 cut(s) 466
MaeI CTAG 2 cut(s) 78, 519
MaeII ACGT 1 cut(s) 406
MaeIII GTNAC 1 cut(s) 105
MhlI GDGCHC 1 cut(s) 197
MluCI AATT 1 cut(s) 426
MlyI GAGTC 1 cut(s) 161
MmeI TCCRAC 1 cut(s) 209
MroI TCCGGA 3 cut(s) 274, 355, 394
MroXI GAANNNNTTC 1 cut(s) 119
MspI CCGG 8 cut(s) 200, 221, 275, 350, 356, 395, 461, 526
MspR9I CCNGG 8 cut(s) 222, 258, 339, 350, 351, 432, 486, 532
MvaI CCWGG 5 cut(s) 258, 339, 432, 486, 532
MwoI GCNNNNNNNGC 4 cut(s) 454, 478, 487, 514
NciI CCSGG 3 cut(s) 222, 350, 351
NlaIII CATG 1 cut(s) 155
NlaIV GGNNCC 3 cut(s) 194, 219, 354
NmuCI GTSAC 1 cut(s) 105
PdmI GAANNNNTTC 1 cut(s) 119
PfoI TCCNGGA 1 cut(s) 430
PinAI ACCGGT 1 cut(s) 525
PkrI GCNGC 3 cut(s) 450, 453, 456
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
PpuMI RGGWCCY 1 cut(s) 434
PshAI GACNNNNGTC 1 cut(s) 339
Psp5II RGGWCCY 1 cut(s) 434
Psp6I CCWGG 5 cut(s) 256, 337, 430, 484, 530
PspGI CCWGG 5 cut(s) 256, 337, 430, 484, 530
PspN4I GGNNCC 3 cut(s) 194, 219, 354
PspPI GGNCC 5 cut(s) 341, 353, 434, 488, 528
PspPPI RGGWCCY 1 cut(s) 434
PstNI CAGNNNCTG 1 cut(s) 437
RsaI GTAC 4 cut(s) 76, 88, 255, 369
RsaNI GTAC 4 cut(s) 75, 87, 254, 368
SatI GCNGC 3 cut(s) 449, 452, 455
Sau96I GGNCC 5 cut(s) 341, 353, 434, 488, 528
ScaI AGTACT 1 cut(s) 76
SchI GAGTC 1 cut(s) 161
ScrFI CCNGG 8 cut(s) 222, 258, 339, 350, 351, 432, 486, 532
SduI GDGCHC 1 cut(s) 197
SinI GGWCC 4 cut(s) 341, 353, 434, 528
SmaI CCCGGG 1 cut(s) 351
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 1 cut(s) 426
SsiI CCGC 6 cut(s) 197, 449, 452, 479, 506, 515
SspMI CTAG 2 cut(s) 78, 519
StyD4I CCNGG 8 cut(s) 220, 256, 337, 348, 349, 430, 484, 530
TaiI ACGT 1 cut(s) 409
TaqI TCGA 1 cut(s) 157
TasI AATT 1 cut(s) 426
TatI WGTACW 1 cut(s) 74
TauI GCSGC 2 cut(s) 451, 454
TseFI GTSAC 1 cut(s) 105
TseI GCWGC 1 cut(s) 454
Tsp45I GTSAC 1 cut(s) 105
TspMI CCCGGG 1 cut(s) 349
VpaK11BI GGWCC 4 cut(s) 341, 353, 434, 528
XmaI CCCGGG 1 cut(s) 349
XmnI GAANNNNTTC 1 cut(s) 119
XspI CTAG 2 cut(s) 78, 519
ZrmI AGTACT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.