Rh4DG018600

Vegetative cell wall protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0018529
Physical Location & Seq
Reverse (-)
2912853 .. 2914426
1574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG018600.1

Sequence Viewer

Length: 627 bp
ATGATTTACATAAACTTCAGCCTTCAAAGTTCTGTTGATCTGTTTCCAAAATTTTGTTTGATGCAAAAGGTTACAATAATGTCGTCCATCTCTGCAATCTCATTCACACTCATAAAACGAACCATTCCACTTTGCTCAGTATCCAAAACAAGTACTAGCACCAGTACCCCTCCATTGTTATTGTCACTCAAGAACCCTATCTTTCCCACTCGACCTCAGATTTTAGTCCATGCTCGATTATCTGACTCACCCAACGAGTATCCAACTCGGAGCCCGCCGGAGTTTTCTCCTCCGGTGCTGGGTTTTGACCGGCCTTCTGTTCCACCCGAAGTACCTGGAATATCTACCTCTCCGGAAGTTGACATCCCAACAACTACTCCACCTGAGATCAGCCCTTATCCTCCACCACTTGACCCCGGTCCGAACCCGGGTCCGGATTTTCCAGTACCTCCTTTGAAGCCACCTCCTGTTCCGGATGTGCCACGACCTTTTCCAGAAAACCCAATTCCAGGACCTGACAGACTGCCGCCGCAGCCACCGGATATAGTGCCTCCACCGCCTCCTGGGCCTGAGATTATTCCACCGCCGCCACCGCCTACCGGTCCAGGCGGGCCTATTGTTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

208

Amino Acids

22.19

Weight (kDa)

5.08

Isoelectric Point (pI)

73.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018529)

Species Orthologous Gene IDs
prunus_persica Prupe.1G023900_v2.0.a1
pyrus_communis pycom13g17550
rosa_chinensis RchiOBHm_Chr4g0388831
rosa_laevigata RLG00000010022
rosa_multiflora Rmu_sc0000697.1_g000012 Rmu_sc0016023.1_g000003
rosa_rugosa Rorug03G0320200
rosa_samantha Rh4BG018000 Rh4CG027700 Rh4DG018600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 3 cut(s) 352, 433, 472
AciI CCGC 8 cut(s) 275, 527, 530, 557, 584, 587, 593, 609
AcsI RAATTY 1 cut(s) 50
AfaI GTAC 4 cut(s) 154, 166, 333, 447
AfiI CCNNNNNNNGG 6 cut(s) 299, 428, 433, 509, 563, 599
AgeI ACCGGT 1 cut(s) 599
AgsI TTSAA 2 cut(s) 26, 457
AjnI CCWGG 4 cut(s) 334, 508, 562, 604
AlwNI CAGNNNCTG 1 cut(s) 515
Ama87I CYCGRG 1 cut(s) 427
Aor13HI TCCGGA 3 cut(s) 352, 433, 472
AoxI GGCC 3 cut(s) 311, 566, 611
ApeKI GCWGC 1 cut(s) 532
ApoI RAATTY 1 cut(s) 50
AsiGI ACCGGT 1 cut(s) 599
AspS9I GGNCC 6 cut(s) 419, 431, 512, 566, 602, 611
AsuC2I CCSGG 3 cut(s) 417, 428, 429
AsuHPI GGTGA 1 cut(s) 240
AvaI CYCGRG 1 cut(s) 427
AvaII GGWCC 4 cut(s) 419, 431, 512, 602
BanII GRGCYC 1 cut(s) 275
BbvI GCAGC 1 cut(s) 544
BccI CCATC 1 cut(s) 95
BciT130I CCWGG 4 cut(s) 336, 510, 564, 606
BciVI GTATCC 2 cut(s) 151, 270
BcnI CCSGG 3 cut(s) 417, 428, 429
BfaI CTAG 1 cut(s) 156
BfuI GTATCC 2 cut(s) 151, 270
BglI GCCNNNNNGGC 1 cut(s) 565
BisI GCNGC 4 cut(s) 527, 530, 533, 587
BlsI GCNGC 4 cut(s) 528, 531, 534, 588
BmcAI AGTACT 1 cut(s) 154
Bme1390I CCNGG 7 cut(s) 336, 417, 428, 429, 510, 564, 606
Bme18I GGWCC 4 cut(s) 419, 431, 512, 602
BmeT110I CYCGRG 1 cut(s) 427
BmgT120I GGNCC 6 cut(s) 419, 431, 512, 566, 602, 611
BmiI GGNNCC 2 cut(s) 272, 432
BmrFI CCNGG 7 cut(s) 336, 417, 428, 429, 510, 564, 606
BmsI GCATC 1 cut(s) 51
BoxI GACNNNNGTC 1 cut(s) 417
BpuEI CTTGAG 1 cut(s) 173
BpuMI CCSGG 3 cut(s) 417, 428, 429
BsaJI CCNNGG 3 cut(s) 415, 427, 563
BsaWI WCCGGW 6 cut(s) 292, 352, 433, 472, 538, 599
BsaXI ACNNNNNCTCC 2 cut(s) 361, 391
Bsc4I CCNNNNNNNGG 6 cut(s) 299, 428, 433, 509, 563, 599
Bse118I RCCGGY 2 cut(s) 309, 599
Bse1I ACTGG 2 cut(s) 162, 443
BseAI TCCGGA 3 cut(s) 352, 433, 472
BseBI CCWGG 4 cut(s) 336, 510, 564, 606
BseDI CCNNGG 3 cut(s) 415, 427, 563
BseGI GGATG 2 cut(s) 363, 481
BseLI CCNNNNNNNGG 6 cut(s) 299, 428, 433, 509, 563, 599
BseMII CTCAG 4 cut(s) 150, 230, 375, 561
BseNI ACTGG 2 cut(s) 162, 443
BseRI GAGGAG 1 cut(s) 279
BseXI GCAGC 1 cut(s) 544
BseYI CCCAGC 1 cut(s) 298
BshFI GGCC 3 cut(s) 313, 568, 613
BshTI ACCGGT 1 cut(s) 599
BsiHKCI CYCGRG 1 cut(s) 427
BslI CCNNNNNNNGG 6 cut(s) 299, 428, 433, 509, 563, 599
BsnI GGCC 3 cut(s) 313, 568, 613
BsoBI CYCGRG 1 cut(s) 427
Bsp1286I GDGCHC 1 cut(s) 275
Bsp13I TCCGGA 3 cut(s) 352, 433, 472
Bsp143I GATC 2 cut(s) 37, 387
BspACI CCGC 8 cut(s) 275, 527, 530, 557, 584, 587, 593, 609
BspANI GGCC 3 cut(s) 313, 568, 613
BspCNI CTCAG 4 cut(s) 149, 229, 376, 562
BspEI TCCGGA 3 cut(s) 352, 433, 472
BspLI GGNNCC 2 cut(s) 272, 432
BsrFI RCCGGY 2 cut(s) 309, 599
BsrI ACTGG 2 cut(s) 162, 443
BssAI RCCGGY 2 cut(s) 309, 599
BssECI CCNNGG 3 cut(s) 415, 427, 563
BssMI GATC 2 cut(s) 37, 387
Bst2UI CCWGG 4 cut(s) 336, 510, 564, 606
BstC8I GCNNGC 2 cut(s) 275, 611
BstDEI CTNAG 4 cut(s) 136, 216, 384, 570
BstF5I GGATG 2 cut(s) 363, 481
BstKTI GATC 2 cut(s) 40, 390
BstMBI GATC 2 cut(s) 37, 387
BstMWI GCNNNNNNNGC 4 cut(s) 532, 556, 565, 592
BstNI CCWGG 4 cut(s) 336, 510, 564, 606
BstPAI GACNNNNGTC 1 cut(s) 417
BstSCI CCNGG 7 cut(s) 334, 415, 426, 427, 508, 562, 604
BstV1I GCAGC 1 cut(s) 544
BsuI GTATCC 2 cut(s) 151, 270
BsuRI GGCC 3 cut(s) 313, 568, 613
BtsCI GGATG 2 cut(s) 363, 481
Cac8I GCNNGC 2 cut(s) 275, 611
CaiI CAGNNNCTG 1 cut(s) 515
Cfr10I RCCGGY 2 cut(s) 309, 599
Cfr13I GGNCC 6 cut(s) 419, 431, 512, 566, 602, 611
Cfr9I CCCGGG 1 cut(s) 427
CpoI CGGWCCG 1 cut(s) 419
Csp6I GTAC 4 cut(s) 153, 165, 332, 446
CspAI ACCGGT 1 cut(s) 599
CspI CGGWCCG 1 cut(s) 419
CviAII CATG 1 cut(s) 230
CviJI RGCY 8 cut(s) 21, 273, 313, 393, 460, 535, 568, 613
CviKI_1 RGCY 8 cut(s) 21, 273, 313, 393, 460, 535, 568, 613
CviQI GTAC 4 cut(s) 153, 165, 332, 446
DdeI CTNAG 4 cut(s) 136, 216, 384, 570
DpnI GATC 2 cut(s) 39, 389
DpnII GATC 2 cut(s) 37, 387
Eco24I GRGCYC 1 cut(s) 275
Eco47I GGWCC 4 cut(s) 419, 431, 512, 602
Eco88I CYCGRG 1 cut(s) 427
EcoO109I RGGNCCY 1 cut(s) 512
EcoRII CCWGG 4 cut(s) 334, 508, 562, 604
EcoT38I GRGCYC 1 cut(s) 275
FaeI CATG 1 cut(s) 233
FaiI YATR 4 cut(s) 11, 113, 231, 545
FatI CATG 1 cut(s) 229
FauI CCCGC 2 cut(s) 282, 602
Fnu4HI GCNGC 4 cut(s) 527, 530, 533, 587
FokI GGATG 2 cut(s) 350, 488
FriOI GRGCYC 1 cut(s) 275
Fsp4HI GCNGC 4 cut(s) 527, 530, 533, 587
FspBI CTAG 1 cut(s) 156
GluI GCNGC 4 cut(s) 527, 530, 533, 587
GsaI CCCAGC 1 cut(s) 302
HaeIII GGCC 3 cut(s) 313, 568, 613
Hin1II CATG 1 cut(s) 233
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HinfI GANTC 1 cut(s) 245
HphI GGTGA 1 cut(s) 240
Hpy166II GTNNAC 1 cut(s) 361
Hpy188I TCNGA 4 cut(s) 219, 244, 270, 423
Hpy188III TCNNGA 5 cut(s) 190, 353, 434, 473, 494
Hpy8I GTNNAC 1 cut(s) 361
HpyAV CCTTC 2 cut(s) 32, 324
HpyCH4V TGCA 2 cut(s) 64, 95
HpyF10VI GCNNNNNNNGC 4 cut(s) 532, 556, 565, 592
HpyF3I CTNAG 4 cut(s) 136, 216, 384, 570
Hsp92II CATG 1 cut(s) 233
Kpn2I TCCGGA 3 cut(s) 352, 433, 472
Kzo9I GATC 2 cut(s) 37, 387
LmnI GCTCC 1 cut(s) 270
Lsp1109I GCAGC 1 cut(s) 544
LweI GCATC 1 cut(s) 51
MaeI CTAG 1 cut(s) 156
MaeIII GTNAC 2 cut(s) 70, 183
MalI GATC 2 cut(s) 39, 389
MboI GATC 2 cut(s) 37, 387
MhlI GDGCHC 1 cut(s) 275
MluCI AATT 2 cut(s) 50, 504
MlyI GAGTC 1 cut(s) 239
MmeI TCCRAC 1 cut(s) 287
MnlI CCTC 9 cut(s) 180, 225, 300, 358, 411, 459, 474, 561, 570
MroI TCCGGA 3 cut(s) 352, 433, 472
MspR9I CCNGG 7 cut(s) 336, 417, 428, 429, 510, 564, 606
MvaI CCWGG 4 cut(s) 336, 510, 564, 606
MwoI GCNNNNNNNGC 4 cut(s) 532, 556, 565, 592
NciI CCSGG 3 cut(s) 417, 428, 429
NdeII GATC 2 cut(s) 37, 387
NlaIII CATG 1 cut(s) 233
NlaIV GGNNCC 2 cut(s) 272, 432
NmuCI GTSAC 1 cut(s) 183
PfoI TCCNGGA 1 cut(s) 508
PinAI ACCGGT 1 cut(s) 599
PkrI GCNGC 4 cut(s) 528, 531, 534, 588
PleI GAGTC 1 cut(s) 239
PpsI GAGTC 1 cut(s) 239
PpuMI RGGWCCY 1 cut(s) 512
PshAI GACNNNNGTC 1 cut(s) 417
Psp5II RGGWCCY 1 cut(s) 512
Psp6I CCWGG 4 cut(s) 334, 508, 562, 604
PspFI CCCAGC 1 cut(s) 298
PspGI CCWGG 4 cut(s) 334, 508, 562, 604
PspN4I GGNNCC 2 cut(s) 272, 432
PspPI GGNCC 6 cut(s) 419, 431, 512, 566, 602, 611
PspPPI RGGWCCY 1 cut(s) 512
PstNI CAGNNNCTG 1 cut(s) 515
RsaI GTAC 4 cut(s) 154, 166, 333, 447
RsaNI GTAC 4 cut(s) 153, 165, 332, 446
Rsr2I CGGWCCG 1 cut(s) 419
RsrII CGGWCCG 1 cut(s) 419
SatI GCNGC 4 cut(s) 527, 530, 533, 587
Sau3AI GATC 2 cut(s) 37, 387
Sau96I GGNCC 6 cut(s) 419, 431, 512, 566, 602, 611
ScaI AGTACT 1 cut(s) 154
SchI GAGTC 1 cut(s) 239
ScrFI CCNGG 7 cut(s) 336, 417, 428, 429, 510, 564, 606
SduI GDGCHC 1 cut(s) 275
SetI ASST 9 cut(s) 72, 217, 337, 350, 385, 451, 466, 490, 517
SfaNI GCATC 1 cut(s) 51
SinI GGWCC 4 cut(s) 419, 431, 512, 602
SmaI CCCGGG 1 cut(s) 429
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 2 cut(s) 50, 504
SsiI CCGC 8 cut(s) 275, 527, 530, 557, 584, 587, 593, 609
SspMI CTAG 1 cut(s) 156
StyD4I CCNGG 7 cut(s) 334, 415, 426, 427, 508, 562, 604
TaqI TCGA 2 cut(s) 211, 235
TasI AATT 2 cut(s) 50, 504
TatI WGTACW 1 cut(s) 152
TauI GCSGC 3 cut(s) 529, 532, 589
TseFI GTSAC 1 cut(s) 183
TseI GCWGC 1 cut(s) 532
Tsp45I GTSAC 1 cut(s) 183
TspMI CCCGGG 1 cut(s) 427
VpaK11BI GGWCC 4 cut(s) 419, 431, 512, 602
XapI RAATTY 1 cut(s) 50
XmaI CCCGGG 1 cut(s) 427
XspI CTAG 1 cut(s) 156
ZrmI AGTACT 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.