Prupe.1G052700_v2.0.a1

Small acidic protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014128
Physical Location & Seq
Forward (+)
3687875 .. 3689805
1931 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G052700.1

Sequence Viewer

Length: 291 bp
ATGTCGTCGCCAGTGGCAAGACAAAAGGCGAGCTCCCCTGCCGAGAACCAAAACGTGAGGCGCTCCATAGCCATAGCTTCCGCGAGAGAGAGAAGGTTTGGAGCCATGAGGCCGACTCCGATGGACTTCTTCGGCGACATGGACGACCAGGGCTCCACCATGGCCATGGACGTTGACGACGTTGACACACTCGAGAGCTTTGCCGACGGCGTCATCGGCGAGAACAAGCTGGCCGACGCTGACTTCTTCAATTCCTTCGAGGACGATTTCGACGACACCGACATCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.59

Weight (kDa)

4.05

Isoelectric Point (pI)

45.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014128)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24280 AT4G13520 AT4G13520
fragaria_vesca FvH4_4g05200 FvH4_4g05200
prunus_persica Prupe.1G052700_v2.0.a1
pyrus_communis pycom16g19280
rosa_chinensis RchiOBHm_Chr4g0396111
rosa_laevigata RLG00000009571
rosa_multiflora Rmu_co8348141.1_g000001 Rmu_sc0007010.1_g000012 Rmu_sc0009634.1_g000009
rosa_roxburghii Rroxscaffold_5G00340910
rosa_rugosa Rorug03G0352300
rosa_samantha Rh4BG064300 Rh4CG070900
rosa_wichuraiana Rw4G005340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 83
AciI CCGC 1 cut(s) 81
AcoI YGGCCR 2 cut(s) 162, 231
AcyI GRCGYC 1 cut(s) 210
AgsI TTSAA 1 cut(s) 250
AjnI CCWGG 1 cut(s) 147
AluBI AGCT 4 cut(s) 33, 77, 198, 229
AluI AGCT 4 cut(s) 33, 77, 198, 229
Alw21I GWGCWC 1 cut(s) 35
Ama87I CYCGRG 1 cut(s) 191
AoxI GGCC 3 cut(s) 110, 162, 231
AspLEI GCGC 1 cut(s) 63
AvaI CYCGRG 1 cut(s) 191
BalI TGGCCA 1 cut(s) 164
BanII GRGCYC 2 cut(s) 35, 155
Bbv12I GWGCWC 1 cut(s) 35
BccI CCATC 1 cut(s) 115
BceAI ACGGC 1 cut(s) 223
BcgI CGANNNNNNTGC 2 cut(s) 182, 216
BciT130I CCWGG 1 cut(s) 149
BfoI RGCGCY 1 cut(s) 64
Bme1390I CCNGG 1 cut(s) 149
BmeT110I CYCGRG 1 cut(s) 191
BmiI GGNNCC 2 cut(s) 103, 154
BmrFI CCNGG 1 cut(s) 149
BplI GAGNNNNNCTC 2 cut(s) 100, 132
BsaHI GRCGYC 1 cut(s) 210
BsaJI CCNNGG 3 cut(s) 148, 159, 165
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bse1I ACTGG 1 cut(s) 11
BseBI CCWGG 1 cut(s) 149
BseDI CCNNGG 3 cut(s) 148, 159, 165
BseNI ACTGG 1 cut(s) 11
Bsh1236I CGCG 1 cut(s) 83
BshFI GGCC 3 cut(s) 112, 164, 233
BsiHKAI GWGCWC 1 cut(s) 35
BsiHKCI CYCGRG 1 cut(s) 191
BsnI GGCC 3 cut(s) 112, 164, 233
BsoBI CYCGRG 1 cut(s) 191
Bsp1286I GDGCHC 2 cut(s) 35, 155
Bsp19I CCATGG 2 cut(s) 159, 165
BspACI CCGC 1 cut(s) 81
BspANI GGCC 3 cut(s) 112, 164, 233
BspFNI CGCG 1 cut(s) 83
BspLI GGNNCC 2 cut(s) 103, 154
BsrI ACTGG 1 cut(s) 11
BssECI CCNNGG 3 cut(s) 148, 159, 165
BssNI GRCGYC 1 cut(s) 210
BssT1I CCWWGG 2 cut(s) 159, 165
Bst2UI CCWGG 1 cut(s) 149
BstACI GRCGYC 1 cut(s) 210
BstC8I GCNNGC 2 cut(s) 31, 231
BstDSI CCRYGG 2 cut(s) 159, 165
BstFNI CGCG 1 cut(s) 83
BstH2I RGCGCY 1 cut(s) 64
BstHHI GCGC 1 cut(s) 63
BstMWI GCNNNNNNNGC 1 cut(s) 216
BstNI CCWGG 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 147
BstUI CGCG 1 cut(s) 83
BstXI CCANNNNNNTGG 1 cut(s) 166
BsuRI GGCC 3 cut(s) 112, 164, 233
BtgI CCRYGG 2 cut(s) 159, 165
BtsIMutI CAGTG 1 cut(s) 18
Cac8I GCNNGC 2 cut(s) 31, 231
CfoI GCGC 1 cut(s) 63
CseI GACGC 2 cut(s) 199, 245
CviAII CATG 4 cut(s) 106, 139, 160, 166
EaeI YGGCCR 2 cut(s) 162, 231
Ecl136II GAGCTC 1 cut(s) 33
Eco130I CCWWGG 2 cut(s) 159, 165
Eco24I GRGCYC 2 cut(s) 35, 155
Eco53kI GAGCTC 1 cut(s) 33
Eco88I CYCGRG 1 cut(s) 191
EcoICRI GAGCTC 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 147
EcoT14I CCWWGG 2 cut(s) 159, 165
EcoT38I GRGCYC 2 cut(s) 35, 155
ErhI CCWWGG 2 cut(s) 159, 165
FaeI CATG 4 cut(s) 109, 142, 163, 169
FaiI YATR 6 cut(s) 68, 74, 107, 140, 161, 167
FatI CATG 4 cut(s) 105, 138, 159, 165
FriOI GRGCYC 2 cut(s) 35, 155
GlaI GCGC 1 cut(s) 62
HaeII RGCGCY 1 cut(s) 64
HaeIII GGCC 3 cut(s) 112, 164, 233
HgaI GACGC 2 cut(s) 199, 245
HhaI GCGC 1 cut(s) 63
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 4 cut(s) 109, 142, 163, 169
Hin6I GCGC 1 cut(s) 61
HinP1I GCGC 1 cut(s) 61
HincII GTYRAC 2 cut(s) 175, 184
HindII GTYRAC 2 cut(s) 175, 184
HinfI GANTC 1 cut(s) 115
Hpy166II GTNNAC 2 cut(s) 175, 184
Hpy188I TCNGA 1 cut(s) 120
Hpy188III TCNNGA 1 cut(s) 193
Hpy8I GTNNAC 2 cut(s) 175, 184
Hpy99I CGWCG 5 cut(s) 10, 182, 209, 239, 275
HpyAV CCTTC 2 cut(s) 87, 265
HpyCH4IV ACGT 3 cut(s) 54, 171, 180
HpyF10VI GCNNNNNNNGC 1 cut(s) 216
HpySE526I ACGT 3 cut(s) 54, 171, 180
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 4 cut(s) 109, 142, 163, 169
HspAI GCGC 1 cut(s) 61
LmnI GCTCC 4 cut(s) 38, 68, 101, 158
LpnPI CCDG 5 cut(s) 24, 51, 134, 161, 215
MaeII ACGT 3 cut(s) 54, 171, 180
MboII GAAGA 2 cut(s) 121, 238
MhlI GDGCHC 2 cut(s) 35, 155
MlsI TGGCCA 1 cut(s) 164
MluCI AATT 1 cut(s) 250
MluNI TGGCCA 1 cut(s) 164
MlyI GAGTC 1 cut(s) 109
MnlI CCTC 3 cut(s) 51, 102, 253
Mox20I TGGCCA 1 cut(s) 164
MscI TGGCCA 1 cut(s) 164
MslI CAYNNNNRTG 1 cut(s) 164
Msp20I TGGCCA 1 cut(s) 164
MspR9I CCNGG 1 cut(s) 149
MvaI CCWGG 1 cut(s) 149
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 1 cut(s) 216
NcoI CCATGG 2 cut(s) 159, 165
NlaIII CATG 4 cut(s) 109, 142, 163, 169
NlaIV GGNNCC 2 cut(s) 103, 154
NmeAIII GCCGAG 1 cut(s) 67
PaeR7I CTCGAG 1 cut(s) 191
PcsI WCGNNNNNNNCGW 3 cut(s) 177, 270, 276
PflFI GACNNNGTC 1 cut(s) 209
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
Psp124BI GAGCTC 1 cut(s) 35
Psp6I CCWGG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 147
PspN4I GGNNCC 2 cut(s) 103, 154
PsyI GACNNNGTC 1 cut(s) 209
RseI CAYNNNNRTG 1 cut(s) 164
SacI GAGCTC 1 cut(s) 35
SchI GAGTC 1 cut(s) 109
ScrFI CCNGG 1 cut(s) 149
SduI GDGCHC 2 cut(s) 35, 155
SetI ASST 8 cut(s) 35, 57, 79, 98, 174, 183, 200, 231
Sfr274I CTCGAG 1 cut(s) 191
SlaI CTCGAG 1 cut(s) 191
SmiMI CAYNNNNRTG 1 cut(s) 164
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 1 cut(s) 250
SsiI CCGC 1 cut(s) 81
SstI GAGCTC 1 cut(s) 35
StyD4I CCNGG 1 cut(s) 147
StyI CCWWGG 2 cut(s) 159, 165
TaiI ACGT 3 cut(s) 57, 174, 183
TaqI TCGA 3 cut(s) 192, 258, 270
TasI AATT 1 cut(s) 250
TscAI CASTG 1 cut(s) 18
TspRI CASTG 1 cut(s) 18
Tth111I GACNNNGTC 1 cut(s) 209
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XhoI CTCGAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.