Rh4BG064300

Small acidic protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0014128
Physical Location & Seq
Forward (+)
11425000 .. 11435300
10301 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG064300.1

Sequence Viewer

Length: 537 bp
ATGTCTATGTATGAAGATAAAGGCTATGGTTGCTTTGGCGCAATGTATAAACCAATCAACTGCCAGTTTGGTATTTTTCAAAGACTTGGCCTGCATGTTGCTACAACCAATGACAAATGGGCATTTCATTTAAACGAATTGGCTTTGCATCTTCCTTTATGTGTCTTCGTCAATGGAGCGATAATACAAATTACTGAGTCGGTGAAAGTCTCCGCAGAAGGAACAAATAAAAACGATATGTCGTCCTTCACAAGACAAAAGGCGAGCTCTCCAGCCGAAATCCAATACGCTCGACGCTCCGCGGCTCTAGCTTCAGCGAGACAGAGAAGATCTACGGCGGCGACGATGAGGCCGACGGCGATGGAGTTCTTCAGCGACATGGAAGACCAGGGCTCCACCATGGCCATGGACGTCGACGACATCGACGCCCTCGAGATCTTCGGCGGCGATGGTGTCATCGGAGAGAACAAGCTCGCCGACCTCGACTTCTTCAACTCCTTCCCCGACGACTTCGACGAGTCCGACATGATCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

178

Amino Acids

19.73

Weight (kDa)

4.57

Isoelectric Point (pI)

38.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014128)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24280 AT4G13520 AT4G13520
fragaria_vesca FvH4_4g05200 FvH4_4g05200
prunus_persica Prupe.1G052700_v2.0.a1
pyrus_communis pycom16g19280
rosa_chinensis RchiOBHm_Chr4g0396111
rosa_laevigata RLG00000009571
rosa_multiflora Rmu_co8348141.1_g000001 Rmu_sc0007010.1_g000012 Rmu_sc0009634.1_g000009
rosa_roxburghii Rroxscaffold_5G00340910
rosa_rugosa Rorug03G0352300
rosa_samantha Rh4BG064300 Rh4CG070900
rosa_wichuraiana Rw4G005340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 414
AccI GTMKAC 1 cut(s) 414
AccII CGCG 1 cut(s) 302
AciI CCGC 5 cut(s) 213, 300, 302, 338, 444
AcoI YGGCCR 1 cut(s) 402
AcuI CTGAAG 2 cut(s) 297, 355
AcyI GRCGYC 2 cut(s) 411, 426
AgsI TTSAA 2 cut(s) 80, 493
AjnI CCWGG 1 cut(s) 387
AluBI AGCT 3 cut(s) 267, 311, 472
AluI AGCT 3 cut(s) 267, 311, 472
Alw21I GWGCWC 1 cut(s) 269
Alw26I GTCTC 2 cut(s) 214, 313
Ama87I CYCGRG 1 cut(s) 431
AoxI GGCC 3 cut(s) 88, 350, 402
AspLEI GCGC 1 cut(s) 41
AsuHPI GGTGA 1 cut(s) 214
AvaI CYCGRG 1 cut(s) 431
BalI TGGCCA 1 cut(s) 404
BanII GRGCYC 2 cut(s) 269, 395
BbsI GAAGAC 2 cut(s) 157, 390
Bbv12I GWGCWC 1 cut(s) 269
BccI CCATC 2 cut(s) 355, 443
BceAI ACGGC 2 cut(s) 351, 372
BciT130I CCWGG 1 cut(s) 389
BclI TGATCA 1 cut(s) 528
BcoDI GTCTC 2 cut(s) 214, 313
BfaI CTAG 2 cut(s) 308, 535
BglII AGATCT 2 cut(s) 329, 435
BisI GCNGC 3 cut(s) 303, 339, 445
BlsI GCNGC 3 cut(s) 304, 340, 446
Bme1390I CCNGG 1 cut(s) 389
BmeT110I CYCGRG 1 cut(s) 431
BmiI GGNNCC 1 cut(s) 394
BmrFI CCNGG 1 cut(s) 389
BmsI GCATC 1 cut(s) 157
BpiI GAAGAC 2 cut(s) 157, 390
BpmI CTGGAG 1 cut(s) 255
BsaHI GRCGYC 2 cut(s) 411, 426
BsaJI CCNNGG 4 cut(s) 300, 388, 399, 405
BsaXI ACNNNNNCTCC 2 cut(s) 377, 407
Bse1I ACTGG 1 cut(s) 64
Bse3DI GCAATG 1 cut(s) 48
BseBI CCWGG 1 cut(s) 389
BseDI CCNNGG 4 cut(s) 300, 388, 399, 405
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 1 cut(s) 186
BseNI ACTGG 1 cut(s) 64
Bsh1236I CGCG 1 cut(s) 302
BshFI GGCC 3 cut(s) 90, 352, 404
BsiHKAI GWGCWC 1 cut(s) 269
BsiHKCI CYCGRG 1 cut(s) 431
BsmAI GTCTC 2 cut(s) 214, 313
BsnI GGCC 3 cut(s) 90, 352, 404
BsoBI CYCGRG 1 cut(s) 431
Bsp1286I GDGCHC 2 cut(s) 269, 395
Bsp143I GATC 3 cut(s) 329, 435, 528
Bsp19I CCATGG 2 cut(s) 399, 405
BspACI CCGC 5 cut(s) 213, 300, 302, 338, 444
BspANI GGCC 3 cut(s) 90, 352, 404
BspCNI CTCAG 1 cut(s) 187
BspFNI CGCG 1 cut(s) 302
BspLI GGNNCC 1 cut(s) 394
BsrDI GCAATG 1 cut(s) 48
BsrI ACTGG 1 cut(s) 64
BssECI CCNNGG 4 cut(s) 300, 388, 399, 405
BssMI GATC 3 cut(s) 329, 435, 528
BssNI GRCGYC 2 cut(s) 411, 426
BssT1I CCWWGG 2 cut(s) 399, 405
Bst2UI CCWGG 1 cut(s) 389
BstACI GRCGYC 2 cut(s) 411, 426
BstC8I GCNNGC 3 cut(s) 92, 265, 474
BstDEI CTNAG 1 cut(s) 195
BstDSI CCRYGG 3 cut(s) 300, 399, 405
BstFNI CGCG 1 cut(s) 302
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 3 cut(s) 332, 438, 531
BstMAI GTCTC 2 cut(s) 214, 313
BstMBI GATC 3 cut(s) 329, 435, 528
BstMWI GCNNNNNNNGC 2 cut(s) 30, 308
BstNI CCWGG 1 cut(s) 389
BstNSI RCATGY 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 387
BstUI CGCG 1 cut(s) 302
BstV2I GAAGAC 2 cut(s) 157, 390
BstX2I RGATCY 2 cut(s) 329, 435
BstXI CCANNNNNNTGG 1 cut(s) 406
BstYI RGATCY 2 cut(s) 329, 435
BsuRI GGCC 3 cut(s) 90, 352, 404
BtgI CCRYGG 3 cut(s) 300, 399, 405
BtgZI GCGATG 2 cut(s) 374, 462
Cac8I GCNNGC 3 cut(s) 92, 265, 474
CfoI GCGC 1 cut(s) 41
Cfr42I CCGCGG 1 cut(s) 303
CseI GACGC 2 cut(s) 303, 434
CviAII CATG 5 cut(s) 95, 379, 400, 406, 526
DdeI CTNAG 1 cut(s) 195
DpnI GATC 3 cut(s) 331, 437, 530
DpnII GATC 3 cut(s) 329, 435, 528
DraI TTTAAA 1 cut(s) 132
EaeI YGGCCR 1 cut(s) 402
Ecl136II GAGCTC 1 cut(s) 267
Eco130I CCWWGG 2 cut(s) 399, 405
Eco24I GRGCYC 2 cut(s) 269, 395
Eco53kI GAGCTC 1 cut(s) 267
Eco57I CTGAAG 2 cut(s) 297, 355
Eco88I CYCGRG 1 cut(s) 431
EcoICRI GAGCTC 1 cut(s) 267
EcoRII CCWGG 1 cut(s) 387
EcoT14I CCWWGG 2 cut(s) 399, 405
EcoT38I GRGCYC 2 cut(s) 269, 395
ErhI CCWWGG 2 cut(s) 399, 405
FaeI CATG 5 cut(s) 98, 382, 403, 409, 529
FatI CATG 5 cut(s) 94, 378, 399, 405, 525
FbaI TGATCA 1 cut(s) 528
FblI GTMKAC 1 cut(s) 414
Fnu4HI GCNGC 3 cut(s) 303, 339, 445
FriOI GRGCYC 2 cut(s) 269, 395
Fsp4HI GCNGC 3 cut(s) 303, 339, 445
FspBI CTAG 2 cut(s) 308, 535
GlaI GCGC 1 cut(s) 40
GluI GCNGC 3 cut(s) 303, 339, 445
GsuI CTGGAG 1 cut(s) 255
HaeIII GGCC 3 cut(s) 90, 352, 404
HgaI GACGC 2 cut(s) 303, 434
HhaI GCGC 1 cut(s) 41
Hin1I GRCGYC 2 cut(s) 411, 426
Hin1II CATG 5 cut(s) 98, 382, 403, 409, 529
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HinfI GANTC 2 cut(s) 197, 518
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 1 cut(s) 415
Hpy188I TCNGA 2 cut(s) 461, 523
Hpy188III TCNNGA 1 cut(s) 433
Hpy8I GTNNAC 1 cut(s) 415
Hpy99I CGWCG 8 cut(s) 297, 346, 358, 416, 419, 428, 509, 518
HpyAV CCTTC 3 cut(s) 212, 256, 508
HpyCH4IV ACGT 1 cut(s) 411
HpyCH4V TGCA 2 cut(s) 94, 148
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 308
HpyF3I CTNAG 1 cut(s) 195
HpySE526I ACGT 1 cut(s) 411
Hsp92I GRCGYC 2 cut(s) 411, 426
Hsp92II CATG 5 cut(s) 98, 382, 403, 409, 529
HspAI GCGC 1 cut(s) 39
Ksp22I TGATCA 1 cut(s) 528
KspI CCGCGG 1 cut(s) 303
Kzo9I GATC 3 cut(s) 329, 435, 528
LmnI GCTCC 3 cut(s) 176, 302, 398
LpnPI CCDG 5 cut(s) 77, 104, 285, 374, 401
LweI GCATC 1 cut(s) 157
MaeI CTAG 2 cut(s) 308, 535
MaeII ACGT 1 cut(s) 411
MalI GATC 3 cut(s) 331, 437, 530
MboI GATC 3 cut(s) 329, 435, 528
MboII GAAGA 8 cut(s) 26, 143, 157, 339, 361, 395, 430, 481
MflI RGATCY 2 cut(s) 329, 435
MhlI GDGCHC 2 cut(s) 269, 395
MlsI TGGCCA 1 cut(s) 404
MluCI AATT 2 cut(s) 137, 189
MluNI TGGCCA 1 cut(s) 404
MlyI GAGTC 2 cut(s) 206, 527
MnlI CCTC 3 cut(s) 342, 440, 491
Mox20I TGGCCA 1 cut(s) 404
MscI TGGCCA 1 cut(s) 404
MseI TTAA 1 cut(s) 131
MslI CAYNNNNRTG 1 cut(s) 404
Msp20I TGGCCA 1 cut(s) 404
MspA1I CMGCKG 1 cut(s) 302
MspR9I CCNGG 1 cut(s) 389
MvaI CCWGG 1 cut(s) 389
MvnI CGCG 1 cut(s) 302
MwoI GCNNNNNNNGC 2 cut(s) 30, 308
NcoI CCATGG 2 cut(s) 399, 405
NdeII GATC 3 cut(s) 329, 435, 528
NlaIII CATG 5 cut(s) 98, 382, 403, 409, 529
NlaIV GGNNCC 1 cut(s) 394
NspI RCATGY 1 cut(s) 98
PaeR7I CTCGAG 1 cut(s) 431
PcsI WCGNNNNNNNCGW 7 cut(s) 341, 350, 420, 429, 480, 513, 519
PkrI GCNGC 3 cut(s) 304, 340, 446
PleI GAGTC 2 cut(s) 205, 526
PpsI GAGTC 2 cut(s) 205, 526
Psp124BI GAGCTC 1 cut(s) 269
Psp6I CCWGG 1 cut(s) 387
PspGI CCWGG 1 cut(s) 387
PspN4I GGNNCC 1 cut(s) 394
PsuI RGATCY 2 cut(s) 329, 435
RseI CAYNNNNRTG 1 cut(s) 404
SacI GAGCTC 1 cut(s) 269
SacII CCGCGG 1 cut(s) 303
SalI GTCGAC 1 cut(s) 413
SaqAI TTAA 1 cut(s) 131
SatI GCNGC 3 cut(s) 303, 339, 445
Sau3AI GATC 3 cut(s) 329, 435, 528
SchI GAGTC 2 cut(s) 206, 527
ScrFI CCNGG 1 cut(s) 389
SduI GDGCHC 2 cut(s) 269, 395
SetI ASST 5 cut(s) 269, 313, 414, 474, 483
SfaNI GCATC 1 cut(s) 157
Sfr274I CTCGAG 1 cut(s) 431
Sfr303I CCGCGG 1 cut(s) 303
SgrBI CCGCGG 1 cut(s) 303
SgrDI CGTCGACG 1 cut(s) 413
SlaI CTCGAG 1 cut(s) 431
SmiMI CAYNNNNRTG 1 cut(s) 404
SmlI CTYRAG 1 cut(s) 431
SmoI CTYRAG 1 cut(s) 431
Sse9I AATT 2 cut(s) 137, 189
SsiI CCGC 5 cut(s) 213, 300, 302, 338, 444
SspMI CTAG 2 cut(s) 308, 535
SstI GAGCTC 1 cut(s) 269
StyD4I CCNGG 1 cut(s) 387
StyI CCWWGG 2 cut(s) 399, 405
TaiI ACGT 1 cut(s) 414
TaqI TCGA 6 cut(s) 292, 414, 423, 432, 483, 513
TasI AATT 2 cut(s) 137, 189
TauI GCSGC 3 cut(s) 305, 341, 447
Tru1I TTAA 1 cut(s) 131
Tru9I TTAA 1 cut(s) 131
TspDTI ATGAA 2 cut(s) 27, 116
XceI RCATGY 1 cut(s) 98
XcmI CCANNNNNNNNNTGG 1 cut(s) 403
XhoI CTCGAG 1 cut(s) 431
XmiI GTMKAC 1 cut(s) 414
XspI CTAG 2 cut(s) 308, 535
ZraI GACGTC 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.