RchiOBHm_Chr4g0396111

Small acidic protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0014128
Physical Location & Seq
Forward (+)
12136120 .. 12139727
3608 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36848

Sequence Viewer

Length: 300 bp
ATGTCGTCCTTCACAAGACAAAAGGCGAGCTCTCCAGCCGAAATCCAATACGCTCGACGCTCCGCGGCTCTAGCTTCAGCGAGACAGAGAAGATCTACGGCGGCGACGATGAGGCCGACGGCGATGGAGTTCTTCAGCGACATGGACGACCAGGGCTCCACCATGGCCATGGACGTCGACGACATCGACGCCCTCGAGATCTTCGGCGGCGATGGTGTCATCGGAGAGAACAAGCTCGCCGACCTCGACTTCTTCAACTCCTTCCCCGACGACTTCGACGAGTCCGACATGATCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.92

Weight (kDa)

4.12

Isoelectric Point (pI)

59.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014128)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24280 AT4G13520 AT4G13520
fragaria_vesca FvH4_4g05200 FvH4_4g05200
prunus_persica Prupe.1G052700_v2.0.a1
pyrus_communis pycom16g19280
rosa_chinensis RchiOBHm_Chr4g0396111
rosa_laevigata RLG00000009571
rosa_multiflora Rmu_co8348141.1_g000001 Rmu_sc0007010.1_g000012 Rmu_sc0009634.1_g000009
rosa_roxburghii Rroxscaffold_5G00340910
rosa_rugosa Rorug03G0352300
rosa_samantha Rh4BG064300 Rh4CG070900
rosa_wichuraiana Rw4G005340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 177
AccI GTMKAC 1 cut(s) 177
AccII CGCG 1 cut(s) 65
AciI CCGC 4 cut(s) 63, 65, 101, 207
AcoI YGGCCR 1 cut(s) 165
AcuI CTGAAG 2 cut(s) 60, 118
AcyI GRCGYC 2 cut(s) 174, 189
AgsI TTSAA 1 cut(s) 256
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 3 cut(s) 30, 74, 235
AluI AGCT 3 cut(s) 30, 74, 235
Alw21I GWGCWC 1 cut(s) 32
Alw26I GTCTC 1 cut(s) 76
Ama87I CYCGRG 1 cut(s) 194
AoxI GGCC 2 cut(s) 113, 165
AvaI CYCGRG 1 cut(s) 194
BalI TGGCCA 1 cut(s) 167
BanII GRGCYC 2 cut(s) 32, 158
Bbv12I GWGCWC 1 cut(s) 32
BccI CCATC 2 cut(s) 118, 206
BceAI ACGGC 2 cut(s) 114, 135
BciT130I CCWGG 1 cut(s) 152
BclI TGATCA 1 cut(s) 291
BcoDI GTCTC 1 cut(s) 76
BfaI CTAG 2 cut(s) 71, 298
BglII AGATCT 2 cut(s) 92, 198
BisI GCNGC 3 cut(s) 66, 102, 208
BlsI GCNGC 3 cut(s) 67, 103, 209
Bme1390I CCNGG 1 cut(s) 152
BmeT110I CYCGRG 1 cut(s) 194
BmiI GGNNCC 1 cut(s) 157
BmrFI CCNGG 1 cut(s) 152
BpmI CTGGAG 1 cut(s) 18
BsaHI GRCGYC 2 cut(s) 174, 189
BsaJI CCNNGG 4 cut(s) 63, 151, 162, 168
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 4 cut(s) 63, 151, 162, 168
Bsh1236I CGCG 1 cut(s) 65
BshFI GGCC 2 cut(s) 115, 167
BsiHKAI GWGCWC 1 cut(s) 32
BsiHKCI CYCGRG 1 cut(s) 194
BsmAI GTCTC 1 cut(s) 76
BsnI GGCC 2 cut(s) 115, 167
BsoBI CYCGRG 1 cut(s) 194
Bsp1286I GDGCHC 2 cut(s) 32, 158
Bsp143I GATC 3 cut(s) 92, 198, 291
Bsp19I CCATGG 2 cut(s) 162, 168
BspACI CCGC 4 cut(s) 63, 65, 101, 207
BspANI GGCC 2 cut(s) 115, 167
BspFNI CGCG 1 cut(s) 65
BspLI GGNNCC 1 cut(s) 157
BssECI CCNNGG 4 cut(s) 63, 151, 162, 168
BssMI GATC 3 cut(s) 92, 198, 291
BssNI GRCGYC 2 cut(s) 174, 189
BssT1I CCWWGG 2 cut(s) 162, 168
Bst2UI CCWGG 1 cut(s) 152
BstACI GRCGYC 2 cut(s) 174, 189
BstC8I GCNNGC 2 cut(s) 28, 237
BstDSI CCRYGG 3 cut(s) 63, 162, 168
BstFNI CGCG 1 cut(s) 65
BstKTI GATC 3 cut(s) 95, 201, 294
BstMAI GTCTC 1 cut(s) 76
BstMBI GATC 3 cut(s) 92, 198, 291
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNI CCWGG 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 150
BstUI CGCG 1 cut(s) 65
BstX2I RGATCY 2 cut(s) 92, 198
BstXI CCANNNNNNTGG 1 cut(s) 169
BstYI RGATCY 2 cut(s) 92, 198
BsuRI GGCC 2 cut(s) 115, 167
BtgI CCRYGG 3 cut(s) 63, 162, 168
BtgZI GCGATG 2 cut(s) 137, 225
Cac8I GCNNGC 2 cut(s) 28, 237
Cfr42I CCGCGG 1 cut(s) 66
CseI GACGC 2 cut(s) 66, 197
CviAII CATG 4 cut(s) 142, 163, 169, 289
CviJI RGCY 8 cut(s) 30, 38, 68, 74, 115, 156, 167, 235
CviKI_1 RGCY 8 cut(s) 30, 38, 68, 74, 115, 156, 167, 235
DpnI GATC 3 cut(s) 94, 200, 293
DpnII GATC 3 cut(s) 92, 198, 291
EaeI YGGCCR 1 cut(s) 165
Ecl136II GAGCTC 1 cut(s) 30
Eco130I CCWWGG 2 cut(s) 162, 168
Eco24I GRGCYC 2 cut(s) 32, 158
Eco53kI GAGCTC 1 cut(s) 30
Eco57I CTGAAG 2 cut(s) 60, 118
Eco88I CYCGRG 1 cut(s) 194
EcoICRI GAGCTC 1 cut(s) 30
EcoRII CCWGG 1 cut(s) 150
EcoT14I CCWWGG 2 cut(s) 162, 168
EcoT38I GRGCYC 2 cut(s) 32, 158
ErhI CCWWGG 2 cut(s) 162, 168
FaeI CATG 4 cut(s) 145, 166, 172, 292
FaiI YATR 4 cut(s) 143, 164, 170, 290
FatI CATG 4 cut(s) 141, 162, 168, 288
FbaI TGATCA 1 cut(s) 291
FblI GTMKAC 1 cut(s) 177
Fnu4HI GCNGC 3 cut(s) 66, 102, 208
FriOI GRGCYC 2 cut(s) 32, 158
Fsp4HI GCNGC 3 cut(s) 66, 102, 208
FspBI CTAG 2 cut(s) 71, 298
GluI GCNGC 3 cut(s) 66, 102, 208
GsuI CTGGAG 1 cut(s) 18
HaeIII GGCC 2 cut(s) 115, 167
HgaI GACGC 2 cut(s) 66, 197
Hin1I GRCGYC 2 cut(s) 174, 189
Hin1II CATG 4 cut(s) 145, 166, 172, 292
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HinfI GANTC 1 cut(s) 281
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 2 cut(s) 224, 286
Hpy188III TCNNGA 1 cut(s) 196
Hpy8I GTNNAC 1 cut(s) 178
Hpy99I CGWCG 8 cut(s) 60, 109, 121, 179, 182, 191, 272, 281
HpyAV CCTTC 2 cut(s) 19, 271
HpyCH4IV ACGT 1 cut(s) 174
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpySE526I ACGT 1 cut(s) 174
Hsp92I GRCGYC 2 cut(s) 174, 189
Hsp92II CATG 4 cut(s) 145, 166, 172, 292
Ksp22I TGATCA 1 cut(s) 291
KspI CCGCGG 1 cut(s) 66
Kzo9I GATC 3 cut(s) 92, 198, 291
LmnI GCTCC 2 cut(s) 65, 161
LpnPI CCDG 3 cut(s) 48, 137, 164
MaeI CTAG 2 cut(s) 71, 298
MaeII ACGT 1 cut(s) 174
MalI GATC 3 cut(s) 94, 200, 293
MboI GATC 3 cut(s) 92, 198, 291
MboII GAAGA 4 cut(s) 102, 124, 193, 244
MflI RGATCY 2 cut(s) 92, 198
MhlI GDGCHC 2 cut(s) 32, 158
MlsI TGGCCA 1 cut(s) 167
MluNI TGGCCA 1 cut(s) 167
MlyI GAGTC 1 cut(s) 290
MnlI CCTC 3 cut(s) 105, 203, 254
Mox20I TGGCCA 1 cut(s) 167
MscI TGGCCA 1 cut(s) 167
MslI CAYNNNNRTG 1 cut(s) 167
Msp20I TGGCCA 1 cut(s) 167
MspA1I CMGCKG 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 152
MvaI CCWGG 1 cut(s) 152
MvnI CGCG 1 cut(s) 65
MwoI GCNNNNNNNGC 1 cut(s) 71
NcoI CCATGG 2 cut(s) 162, 168
NdeII GATC 3 cut(s) 92, 198, 291
NlaIII CATG 4 cut(s) 145, 166, 172, 292
NlaIV GGNNCC 1 cut(s) 157
PaeR7I CTCGAG 1 cut(s) 194
PcsI WCGNNNNNNNCGW 7 cut(s) 104, 113, 183, 192, 243, 276, 282
PkrI GCNGC 3 cut(s) 67, 103, 209
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
Psp124BI GAGCTC 1 cut(s) 32
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 157
PsuI RGATCY 2 cut(s) 92, 198
RseI CAYNNNNRTG 1 cut(s) 167
SacI GAGCTC 1 cut(s) 32
SacII CCGCGG 1 cut(s) 66
SalI GTCGAC 1 cut(s) 176
SatI GCNGC 3 cut(s) 66, 102, 208
Sau3AI GATC 3 cut(s) 92, 198, 291
SchI GAGTC 1 cut(s) 290
ScrFI CCNGG 1 cut(s) 152
SduI GDGCHC 2 cut(s) 32, 158
SetI ASST 5 cut(s) 32, 76, 177, 237, 246
Sfr274I CTCGAG 1 cut(s) 194
Sfr303I CCGCGG 1 cut(s) 66
SgrBI CCGCGG 1 cut(s) 66
SgrDI CGTCGACG 1 cut(s) 176
SlaI CTCGAG 1 cut(s) 194
SmiMI CAYNNNNRTG 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
SsiI CCGC 4 cut(s) 63, 65, 101, 207
SspMI CTAG 2 cut(s) 71, 298
SstI GAGCTC 1 cut(s) 32
StyD4I CCNGG 1 cut(s) 150
StyI CCWWGG 2 cut(s) 162, 168
TaiI ACGT 1 cut(s) 177
TaqI TCGA 6 cut(s) 55, 177, 186, 195, 246, 276
TauI GCSGC 3 cut(s) 68, 104, 210
XcmI CCANNNNNNNNNTGG 1 cut(s) 166
XhoI CTCGAG 1 cut(s) 194
XmiI GTMKAC 1 cut(s) 177
XspI CTAG 2 cut(s) 71, 298
ZraI GACGTC 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.