Rorug03G0352300

Small acidic protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0004225
Physical Location & Seq
Reverse (-)
43151511 .. 43164384
12874 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0352300.1

Sequence Viewer

Length: 969 bp
ATGGTGATGATGAGGAGTGTGGTGACGCCGTGGCAGACCTGCCCGCTATTCTCCTTGTTACCCTTAAATGCCCGTAATACCCCTCTCATCCTACGCTCAGCTGCCCACTCTGGTCGTTTATCCATGGCTGCTTCCTCTCAGTCAACGGCTTTTCAGAATCAGAATGTTCCCGCCGGCGCCGGAGCTGATGACAATATGTTTCAGTTGATTCAGTCTCATCAGGAGAAGGCTTCTCGTCTTCCCCCGATTCAGGAAATCCGAACTCTGCTCGATCGTAGTGTTCGTGGAGTACTCTCTACTTTTTCACAGAAGCATGAGGGTTATCCATCAGGATCCATGGTCGACTTTGCATGTGATGCAGATGGATCTCCCATTTTAGCTGTTAGCAGTTTGGCACTTCATACCAAGGATTTAACTCAAAATCCCAAGTGCTCATTGCTCGTGGCCAGAGATCCTGAGGACAGGACTGATTTGTTGGTCACTCTGCATGGTGATGCAATTCCTGTTTCTGAGAAGGATCAAGCAGCCATTCGGACTGCATATTTGGCCAGGCATCCCGATGCATTTTGGGTTGACTTTGGTGACTTCCAATTCATGCGTATTGAACCAAAAGTTGTGCGATATGTGTCAGGGGTTGCAACAGCTTTATTAGGATCAGGAGAGTTCAACAACGAGGAGTATAAAGCTGCAAAAGTTGATCCAATTGCTCAATTTTCAAAGCCTGTTGCATCTCACATGAATAAGGATCATGCTGAAGATACAAAAGCCATTGTGCAGCATTCAACTTCAATTCCGGTAGACTTTGCTTACATTTTGGACTTGGATGCCCTTGGTTTTAATGTCAAGGCTGCTTATCAGGGTAATACTTTCAAGCTTCGAATACCGTTTCCCAGACGTGCAGTGGATCGAAAGGATGTGAAGACTCTAATTGTGGAAATGCTTCATGCGGCAAAGCCTCAAGTGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

322

Amino Acids

35.4

Weight (kDa)

7.16

Isoelectric Point (pI)

31.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNPOx_N PF01243 84 - 209 1e-13 Pyridoxamine 5'-phosphate oxidase
CREG_beta-barrel PF13883 87 - 210 4.9e-16 CREG, beta-barrel
DUF2470 PF10615 240 - 313 1.5e-17 Domain of unknown function (DUF2470)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 47
AccB1I GGYRCC 1 cut(s) 176
AccI GTMKAC 2 cut(s) 342, 798
AciI CCGC 3 cut(s) 44, 171, 947
AclWI GGATC 9 cut(s) 327, 340, 373, 446, 525, 661, 692, 753, 912
AcoI YGGCCR 2 cut(s) 444, 546
AcuI CTGAAG 1 cut(s) 774
AcyI GRCGYC 2 cut(s) 26, 177
AfaI GTAC 1 cut(s) 291
AfiI CCNNNNNNNGG 1 cut(s) 250
AgsI TTSAA 6 cut(s) 605, 667, 717, 783, 789, 871
AjiI CACGTC 1 cut(s) 896
AjnI CCWGG 1 cut(s) 548
AluBI AGCT 6 cut(s) 101, 185, 380, 644, 686, 874
AluI AGCT 6 cut(s) 101, 185, 380, 644, 686, 874
Alw21I GWGCWC 1 cut(s) 434
Alw26I GTCTC 1 cut(s) 219
AlwI GGATC 9 cut(s) 327, 340, 373, 446, 525, 661, 692, 753, 912
AoxI GGCC 2 cut(s) 444, 546
ApeKI GCWGC 6 cut(s) 101, 128, 524, 686, 775, 848
ArsI GACNNNNNNTTYG 2 cut(s) 526, 558
Asp700I GAANNNNTTC 1 cut(s) 939
AspLEI GCGC 1 cut(s) 179
AsuHPI GGTGA 4 cut(s) 16, 34, 503, 593
AsuII TTCGAA 1 cut(s) 877
AxyI CCTNAGG 1 cut(s) 456
BalI TGGCCA 2 cut(s) 446, 548
BamHI GGATCC 1 cut(s) 332
BanI GGYRCC 1 cut(s) 176
BauI CACGAG 1 cut(s) 440
BbsI GAAGAC 2 cut(s) 230, 926
Bbv12I GWGCWC 1 cut(s) 434
BbvI GCAGC 6 cut(s) 88, 115, 536, 673, 787, 835
BccI CCATC 2 cut(s) 334, 356
BceAI ACGGC 2 cut(s) 13, 162
BciT130I CCWGG 1 cut(s) 550
BcoDI GTCTC 1 cut(s) 219
BfoI RGCGCY 1 cut(s) 180
BfuAI ACCTGC 1 cut(s) 47
BisI GCNGC 7 cut(s) 102, 129, 525, 687, 776, 849, 948
BlpI GCTNAGC 1 cut(s) 97
BlsI GCNGC 7 cut(s) 103, 130, 526, 688, 777, 850, 949
BmcAI AGTACT 1 cut(s) 291
Bme1390I CCNGG 1 cut(s) 550
BmgBI CACGTC 1 cut(s) 896
BmiI GGNNCC 2 cut(s) 178, 334
BmrFI CCNGG 1 cut(s) 550
BmsI GCATC 6 cut(s) 346, 484, 550, 562, 737, 814
BpiI GAAGAC 2 cut(s) 230, 926
Bpu1102I GCTNAGC 1 cut(s) 97
Bpu14I TTCGAA 1 cut(s) 877
BpuEI CTTGAG 1 cut(s) 942
BsaHI GRCGYC 2 cut(s) 26, 177
BsaJI CCNNGG 5 cut(s) 29, 123, 336, 405, 829
BsaWI WCCGGW 1 cut(s) 793
Bsc4I CCNNNNNNNGG 1 cut(s) 250
Bse118I RCCGGY 1 cut(s) 173
Bse21I CCTNAGG 1 cut(s) 456
Bse3DI GCAATG 1 cut(s) 434
BseBI CCWGG 1 cut(s) 550
BseDI CCNNGG 5 cut(s) 29, 123, 336, 405, 829
BseGI GGATG 4 cut(s) 87, 553, 829, 919
BseLI CCNNNNNNNGG 1 cut(s) 250
BseMI GCAATG 1 cut(s) 434
BseMII CTCAG 4 cut(s) 111, 152, 447, 501
BseRI GAGGAG 2 cut(s) 28, 689
BseXI GCAGC 6 cut(s) 88, 115, 536, 673, 787, 835
BsgI GTGCAG 2 cut(s) 794, 918
Bsh1285I CGRYCG 1 cut(s) 274
BshFI GGCC 2 cut(s) 446, 548
BshNI GGYRCC 1 cut(s) 176
BsiEI CGRYCG 1 cut(s) 274
BsiHKAI GWGCWC 1 cut(s) 434
BsiSI CCGG 3 cut(s) 174, 180, 794
BslI CCNNNNNNNGG 1 cut(s) 250
BsmAI GTCTC 1 cut(s) 219
BsmI GAATGC 1 cut(s) 778
BsnI GGCC 2 cut(s) 446, 548
Bsp119I TTCGAA 1 cut(s) 877
Bsp1286I GDGCHC 1 cut(s) 434
Bsp143I GATC 9 cut(s) 271, 332, 365, 451, 517, 653, 697, 745, 904
Bsp1720I GCTNAGC 1 cut(s) 97
Bsp19I CCATGG 2 cut(s) 123, 336
BspACI CCGC 3 cut(s) 44, 171, 947
BspANI GGCC 2 cut(s) 446, 548
BspCNI CTCAG 4 cut(s) 110, 151, 448, 502
BspLI GGNNCC 2 cut(s) 178, 334
BspMI ACCTGC 1 cut(s) 47
BspPI GGATC 9 cut(s) 327, 340, 373, 446, 525, 661, 692, 753, 912
BspT104I TTCGAA 1 cut(s) 877
BspT107I GGYRCC 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 434
BsrFI RCCGGY 1 cut(s) 173
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 5 cut(s) 29, 123, 336, 405, 829
BssMI GATC 9 cut(s) 271, 332, 365, 451, 517, 653, 697, 745, 904
BssNI GRCGYC 2 cut(s) 26, 177
BssSI CACGAG 1 cut(s) 440
BssT1I CCWWGG 4 cut(s) 123, 336, 405, 829
Bst2BI CACGAG 1 cut(s) 440
Bst2UI CCWGG 1 cut(s) 550
Bst4CI ACNGT 1 cut(s) 885
BstACI GRCGYC 2 cut(s) 26, 177
BstAPI GCANNNNNTGC 1 cut(s) 356
BstBI TTCGAA 1 cut(s) 877
BstC8I GCNNGC 2 cut(s) 44, 175
BstDEI CTNAG 4 cut(s) 97, 138, 456, 510
BstDSI CCRYGG 3 cut(s) 29, 123, 336
BstF5I GGATG 4 cut(s) 87, 553, 829, 919
BstH2I RGCGCY 1 cut(s) 180
BstHHI GCGC 1 cut(s) 179
BstKTI GATC 9 cut(s) 274, 335, 368, 454, 520, 656, 700, 748, 907
BstMAI GTCTC 1 cut(s) 219
BstMBI GATC 9 cut(s) 271, 332, 365, 451, 517, 653, 697, 745, 904
BstMCI CGRYCG 1 cut(s) 274
BstMWI GCNNNNNNNGC 2 cut(s) 356, 545
BstNI CCWGG 1 cut(s) 550
BstNSI RCATGY 1 cut(s) 354
BstSCI CCNGG 1 cut(s) 548
BstV1I GCAGC 6 cut(s) 88, 115, 536, 673, 787, 835
BstV2I GAAGAC 2 cut(s) 230, 926
BstX2I RGATCY 3 cut(s) 332, 365, 451
BstYI RGATCY 3 cut(s) 332, 365, 451
Bsu36I CCTNAGG 1 cut(s) 456
BsuRI GGCC 2 cut(s) 446, 548
BtgI CCRYGG 3 cut(s) 29, 123, 336
BtrI CACGTC 1 cut(s) 896
BtsCI GGATG 4 cut(s) 87, 553, 829, 919
BtsI GCAGTG 1 cut(s) 906
BtsIMutI CAGTG 1 cut(s) 906
BveI ACCTGC 1 cut(s) 47
Cac8I GCNNGC 2 cut(s) 44, 175
CfoI GCGC 1 cut(s) 179
Cfr10I RCCGGY 1 cut(s) 173
CseI GACGC 1 cut(s) 34
Csp6I GTAC 1 cut(s) 290
CviAII CATG 9 cut(s) 124, 314, 337, 351, 488, 595, 736, 749, 944
CviQI GTAC 1 cut(s) 290
DdeI CTNAG 4 cut(s) 97, 138, 456, 510
DinI GGCGCC 1 cut(s) 178
DpnI GATC 9 cut(s) 273, 334, 367, 453, 519, 655, 699, 747, 906
DpnII GATC 9 cut(s) 271, 332, 365, 451, 517, 653, 697, 745, 904
EaeI YGGCCR 2 cut(s) 444, 546
Eco130I CCWWGG 4 cut(s) 123, 336, 405, 829
Eco57I CTGAAG 1 cut(s) 774
Eco81I CCTNAGG 1 cut(s) 456
EcoRII CCWGG 1 cut(s) 548
EcoT14I CCWWGG 4 cut(s) 123, 336, 405, 829
EcoT22I ATGCAT 1 cut(s) 565
EgeI GGCGCC 1 cut(s) 178
EheI GGCGCC 1 cut(s) 178
ErhI CCWWGG 4 cut(s) 123, 336, 405, 829
FaeI CATG 9 cut(s) 127, 317, 340, 354, 491, 598, 739, 752, 947
FatI CATG 9 cut(s) 123, 313, 336, 350, 487, 594, 735, 748, 943
FauI CCCGC 2 cut(s) 51, 178
FblI GTMKAC 2 cut(s) 342, 798
Fnu4HI GCNGC 7 cut(s) 102, 129, 525, 687, 776, 849, 948
FokI GGATG 4 cut(s) 74, 540, 836, 926
Fsp4HI GCNGC 7 cut(s) 102, 129, 525, 687, 776, 849, 948
GlaI GCGC 1 cut(s) 178
GluI GCNGC 7 cut(s) 102, 129, 525, 687, 776, 849, 948
HaeII RGCGCY 1 cut(s) 180
HaeIII GGCC 2 cut(s) 446, 548
HapII CCGG 3 cut(s) 174, 180, 794
HgaI GACGC 1 cut(s) 34
HhaI GCGC 1 cut(s) 179
Hin1I GRCGYC 2 cut(s) 26, 177
Hin1II CATG 9 cut(s) 127, 317, 340, 354, 491, 598, 739, 752, 947
Hin6I GCGC 1 cut(s) 177
HinP1I GCGC 1 cut(s) 177
HincII GTYRAC 3 cut(s) 144, 343, 574
HindII GTYRAC 3 cut(s) 144, 343, 574
HindIII AAGCTT 1 cut(s) 872
HinfI GANTC 4 cut(s) 157, 208, 247, 922
HpaII CCGG 3 cut(s) 174, 180, 794
HphI GGTGA 4 cut(s) 16, 34, 503, 593
Hpy166II GTNNAC 4 cut(s) 144, 343, 574, 799
Hpy188I TCNGA 5 cut(s) 156, 162, 260, 511, 534
Hpy188III TCNNGA 6 cut(s) 221, 251, 330, 455, 557, 657
Hpy8I GTNNAC 4 cut(s) 144, 343, 574, 799
HpyAV CCTTC 2 cut(s) 220, 508
HpyCH4III ACNGT 1 cut(s) 885
HpyCH4IV ACGT 1 cut(s) 895
HpyF10VI GCNNNNNNNGC 2 cut(s) 356, 545
HpyF3I CTNAG 4 cut(s) 97, 138, 456, 510
HpySE526I ACGT 1 cut(s) 895
Hsp92I GRCGYC 2 cut(s) 26, 177
Hsp92II CATG 9 cut(s) 127, 317, 340, 354, 491, 598, 739, 752, 947
HspAI GCGC 1 cut(s) 177
KasI GGCGCC 1 cut(s) 176
KroI GCCGGC 1 cut(s) 173
KroNI GCCGGC 1 cut(s) 175
Kzo9I GATC 9 cut(s) 271, 332, 365, 451, 517, 653, 697, 745, 904
LmnI GCTCC 1 cut(s) 182
Lsp1109I GCAGC 6 cut(s) 88, 115, 536, 673, 787, 835
LweI GCATC 6 cut(s) 346, 484, 550, 562, 737, 814
MaeII ACGT 1 cut(s) 895
MaeIII GTNAC 4 cut(s) 22, 57, 478, 581
MalI GATC 9 cut(s) 273, 334, 367, 453, 519, 655, 699, 747, 906
MboI GATC 9 cut(s) 271, 332, 365, 451, 517, 653, 697, 745, 904
MboII GAAGA 3 cut(s) 230, 767, 931
MfeI CAATTG 1 cut(s) 702
MflI RGATCY 3 cut(s) 332, 365, 451
MhlI GDGCHC 1 cut(s) 434
MlsI TGGCCA 2 cut(s) 446, 548
MluCI AATT 6 cut(s) 498, 590, 702, 710, 789, 927
MluNI TGGCCA 2 cut(s) 446, 548
Mly113I GGCGCC 1 cut(s) 177
MlyI GAGTC 1 cut(s) 916
MnlI CCTC 7 cut(s) 6, 93, 145, 310, 451, 667, 966
Mox20I TGGCCA 2 cut(s) 446, 548
Mph1103I ATGCAT 1 cut(s) 565
MreI CGCCGGCG 1 cut(s) 173
MroNI GCCGGC 1 cut(s) 173
MroXI GAANNNNTTC 1 cut(s) 939
MscI TGGCCA 2 cut(s) 446, 548
MseI TTAA 4 cut(s) 65, 413, 837, 967
MslI CAYNNNNRTG 2 cut(s) 492, 558
Msp20I TGGCCA 2 cut(s) 446, 548
MspA1I CMGCKG 1 cut(s) 101
MspI CCGG 3 cut(s) 174, 180, 794
MspR9I CCNGG 1 cut(s) 550
MunI CAATTG 1 cut(s) 702
Mva1269I GAATGC 1 cut(s) 778
MvaI CCWGG 1 cut(s) 550
MwoI GCNNNNNNNGC 2 cut(s) 356, 545
NaeI GCCGGC 1 cut(s) 175
NarI GGCGCC 1 cut(s) 177
NcoI CCATGG 2 cut(s) 123, 336
NdeII GATC 9 cut(s) 271, 332, 365, 451, 517, 653, 697, 745, 904
NgoMIV GCCGGC 1 cut(s) 173
NlaIII CATG 9 cut(s) 127, 317, 340, 354, 491, 598, 739, 752, 947
NlaIV GGNNCC 2 cut(s) 178, 334
NmuCI GTSAC 3 cut(s) 22, 478, 581
NsiI ATGCAT 1 cut(s) 565
NspI RCATGY 1 cut(s) 354
NspV TTCGAA 1 cut(s) 877
PcsI WCGNNNNNNNCGW 1 cut(s) 280
PctI GAATGC 1 cut(s) 778
PdiI GCCGGC 1 cut(s) 175
PdmI GAANNNNTTC 1 cut(s) 939
PfeI GAWTC 3 cut(s) 157, 208, 247
PkrI GCNGC 7 cut(s) 103, 130, 526, 688, 777, 850, 949
Ple19I CGATCG 1 cut(s) 274
PleI GAGTC 1 cut(s) 916
PluTI GGCGCC 1 cut(s) 180
PpsI GAGTC 1 cut(s) 916
Psp6I CCWGG 1 cut(s) 548
PspGI CCWGG 1 cut(s) 548
PspN4I GGNNCC 2 cut(s) 178, 334
PsuI RGATCY 3 cut(s) 332, 365, 451
PvuI CGATCG 1 cut(s) 274
PvuII CAGCTG 1 cut(s) 101
RsaI GTAC 1 cut(s) 291
RsaNI GTAC 1 cut(s) 290
RseI CAYNNNNRTG 2 cut(s) 492, 558
SalI GTCGAC 1 cut(s) 341
SaqAI TTAA 4 cut(s) 65, 413, 837, 967
SatI GCNGC 7 cut(s) 102, 129, 525, 687, 776, 849, 948
Sau3AI GATC 9 cut(s) 271, 332, 365, 451, 517, 653, 697, 745, 904
ScaI AGTACT 1 cut(s) 291
SchI GAGTC 1 cut(s) 916
ScrFI CCNGG 1 cut(s) 550
SduI GDGCHC 1 cut(s) 434
SetI ASST 8 cut(s) 41, 103, 187, 382, 646, 688, 876, 898
SfaNI GCATC 6 cut(s) 346, 484, 550, 562, 737, 814
SfoI GGCGCC 1 cut(s) 178
SfuI TTCGAA 1 cut(s) 877
SgrAI CRCCGGYG 1 cut(s) 173
SmiMI CAYNNNNRTG 2 cut(s) 492, 558
SmlI CTYRAG 1 cut(s) 957
SmoI CTYRAG 1 cut(s) 957
Sse9I AATT 6 cut(s) 498, 590, 702, 710, 789, 927
SsiI CCGC 3 cut(s) 44, 171, 947
SspDI GGCGCC 1 cut(s) 176
StyD4I CCNGG 1 cut(s) 548
StyI CCWWGG 4 cut(s) 123, 336, 405, 829
TaaI ACNGT 1 cut(s) 885
TaiI ACGT 1 cut(s) 898
TaqI TCGA 4 cut(s) 270, 342, 877, 907
TasI AATT 6 cut(s) 498, 590, 702, 710, 789, 927
TatI WGTACW 1 cut(s) 289
TauI GCSGC 1 cut(s) 950
TfiI GAWTC 3 cut(s) 157, 208, 247
Tru1I TTAA 4 cut(s) 65, 413, 837, 967
Tru9I TTAA 4 cut(s) 65, 413, 837, 967
TscAI CASTG 1 cut(s) 906
TseFI GTSAC 3 cut(s) 22, 478, 581
TseI GCWGC 6 cut(s) 101, 128, 524, 686, 775, 848
Tsp45I GTSAC 3 cut(s) 22, 478, 581
TspDTI ATGAA 4 cut(s) 389, 583, 752, 932
TspRI CASTG 1 cut(s) 906
XceI RCATGY 1 cut(s) 354
XcmI CCANNNNNNNNNTGG 1 cut(s) 898
XmiI GTMKAC 2 cut(s) 342, 798
XmnI GAANNNNTTC 1 cut(s) 939
ZrmI AGTACT 1 cut(s) 291
Zsp2I ATGCAT 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.