Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004225

Physical Location & Seq

Genomic Coordinates Forward (+)

60162999 .. 60163673

Gene Structure 675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG366800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGATGGCGTACTGCTGTAGAAAACCAAATTGGCCAGAACTTCCCATTGACCTTTTTGAATTGATTTTATCAAAATTATCCCTGAGGTACATACTGCGTTTGAAAGCAGTTTCTCGTTCCTTCTACAACGCTGTCGACCATGTGTCACAGACGTCCTCCTCATCATTCACTTGCTTAGCAGAACCGCCATGGCTCTACCTTGGCATCGATGGTCATGGCTTTCGTTTTCAAAGTCTTCATCAGGAATTTAAGTTTTACTACTTGAATCAGAACAACATGGCCCATGAGTTTCGCGATCACTTTTGCCTAGGATCGTCCAGAGGTTGGCTGCTTCTTTTGAGCAAAACCCTGGATTTTACGCTCTTGAATCCTTTATCCGCAATTCAACTTCCACTCCCTACCGGTACCACTTTTCCAGACTTCATACTGGATACTGATTGCTTATATTATCGTGCAAGGTTTAGCACATTTAATGTATTGTCTTTGCAACCTTCTCTGGTTACAATCATGTACAGTGTCAAACACTTTAGTGCAGGGCCATACAGCATTGCATTTTGTACAACAGATGCAGATGGTAAGTGGACAGAGCAGGATGAGCGTGAATGGTACTTAAATAATTGTTGCCATCATGATCAACTCTATGCATTACGGCAAGACATCAGTACGTACGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

224

Amino Acids

26.04

Weight (kDa)

6.22

Isoelectric Point (pI)

42.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	11 - 48	3e-08	F-box domain
Beta-prop_KIB1-4	PF03478	84 - 219	3.5e-14	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004225)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15921 FvH4_4g04632 FvH4_4g05202 FvH4_4g05500 FvH4_7g24700
prunus_persica	Prupe.1G052900_v2.0.a1 Prupe.1G053000_v2.0.a1
rosa_laevigata	RLG00000032962
rosa_multiflora	Rmu_sc0002021.1_g000018 Rmu_sc0004598.1_g000005 Rmu_sc0010817.1_g000006 Rmu_sc0021895.1_g000002 Rmu_sc0021895.1_g000003
rosa_roxburghii	Rroxscaffold_1G00052700 Rroxscaffold_4G00286440
rosa_rugosa	Rorug03G0352300 Rorug03G0357300
rosa_samantha	Rh1AG366800 Rh1BG330300 Rh1CG343200 Rh1CG344600 Rh1DG361800 Rh4AG059700 Rh4BG058300 Rh4CG064000 Rh4DG054900 Rh4DG061400 Rh4DG061600 Rh5BG185200 Rh5CG205200
rosa_wichuraiana	Rw1G032280 Rw4G004780 Rw5G017140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	155
Acc65I	GGTACC	1 cut(s)	404
AccB1I	GGYRCC	1 cut(s)	404
AccB7I	CCANNNNNTGG	1 cut(s)	324
AccI	GTMKAC	1 cut(s)	135
AccII	CGCG	1 cut(s)	294
AciI	CCGC	2 cut(s)	185, 378
AclWI	GGATC	1 cut(s)	319
AcoI	YGGCCR	1 cut(s)	32
AcsI	RAATTY	1 cut(s)	245
AcyI	GRCGYC	1 cut(s)	152
AfaI	GTAC	8 cut(s)	11, 89, 406, 512, 559, 608, 664, 668
AfiI	CCNNNNNNNGG	1 cut(s)	324
AgeI	ACCGGT	1 cut(s)	401
AgsI	TTSAA	6 cut(s)	59, 103, 230, 265, 367, 386
AhdI	GACNNNNNGTC	1 cut(s)	142
AjnI	CCWGG	1 cut(s)	348
AjuI	GAANNNNNNNTTGG	2 cut(s)	13, 45
AleI	CACNNNNGTG	1 cut(s)	528
AlwI	GGATC	1 cut(s)	319
AoxI	GGCC	3 cut(s)	32, 279, 536
ApeKI	GCWGC	1 cut(s)	328
ApoI	RAATTY	1 cut(s)	245
AsiGI	ACCGGT	1 cut(s)	401
Asp718I	GGTACC	1 cut(s)	404
AspA2I	CCTAGG	1 cut(s)	307
AspS9I	GGNCC	2 cut(s)	280, 536
AvrII	CCTAGG	1 cut(s)	307
AxyI	CCTNAGG	1 cut(s)	83
BalI	TGGCCA	1 cut(s)	34
BanI	GGYRCC	1 cut(s)	404
BbsI	GAAGAC	1 cut(s)	227
BbvI	GCAGC	1 cut(s)	315
BccI	CCATC	3 cut(s)	203, 566, 633
BceAI	ACGGC	1 cut(s)	665
BciT130I	CCWGG	1 cut(s)	350
BciVI	GTATCC	1 cut(s)	424
BclI	TGATCA	1 cut(s)	631
BfaI	CTAG	1 cut(s)	308
BfmI	CTRYAG	1 cut(s)	16
BfuI	GTATCC	1 cut(s)	424
BisI	GCNGC	1 cut(s)	329
BlnI	CCTAGG	1 cut(s)	307
BlpI	GCTNAGC	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	330
Bme1390I	CCNGG	1 cut(s)	350
BmeRI	GACNNNNNGTC	1 cut(s)	142
BmgT120I	GGNCC	2 cut(s)	280, 536
BmiI	GGNNCC	1 cut(s)	406
BmrFI	CCNGG	1 cut(s)	350
BmsI	GCATC	2 cut(s)	213, 556
BpiI	GAAGAC	1 cut(s)	227
Bpu1102I	GCTNAGC	1 cut(s)	175
Bsa29I	ATCGAT	1 cut(s)	207
BsaAI	YACGTR	1 cut(s)	666
BsaHI	GRCGYC	1 cut(s)	152
BsaJI	CCNNGG	4 cut(s)	188, 199, 307, 348
BsaWI	WCCGGW	1 cut(s)	401
BsaXI	ACNNNNNCTCC	2 cut(s)	378, 408
Bsc4I	CCNNNNNNNGG	1 cut(s)	324
Bse118I	RCCGGY	1 cut(s)	401
Bse1I	ACTGG	1 cut(s)	432
Bse21I	CCTNAGG	1 cut(s)	83
Bse3DI	GCAATG	1 cut(s)	546
BseBI	CCWGG	1 cut(s)	350
BseCI	ATCGAT	1 cut(s)	207
BseDI	CCNNGG	4 cut(s)	188, 199, 307, 348
BseGI	GGATG	1 cut(s)	598
BseLI	CCNNNNNNNGG	1 cut(s)	324
BseMI	GCAATG	1 cut(s)	546
BseMII	CTCAG	1 cut(s)	74
BseNI	ACTGG	1 cut(s)	432
BseRI	GAGGAG	1 cut(s)	148
BseXI	GCAGC	1 cut(s)	315
BsgI	GTGCAG	1 cut(s)	552
Bsh1236I	CGCG	1 cut(s)	294
BshFI	GGCC	3 cut(s)	34, 281, 538
BshNI	GGYRCC	1 cut(s)	404
BshTI	ACCGGT	1 cut(s)	401
BshVI	ATCGAT	1 cut(s)	207
BsiSI	CCGG	1 cut(s)	402
BsiWI	CGTACG	1 cut(s)	666
BslI	CCNNNNNNNGG	1 cut(s)	324
BsnI	GGCC	3 cut(s)	34, 281, 538
Bsp1407I	TGTACA	2 cut(s)	510, 557
Bsp143I	GATC	3 cut(s)	295, 311, 631
Bsp1720I	GCTNAGC	1 cut(s)	175
Bsp19I	CCATGG	1 cut(s)	188
Bsp68I	TCGCGA	1 cut(s)	294
BspACI	CCGC	2 cut(s)	185, 378
BspANI	GGCC	3 cut(s)	34, 281, 538
BspCNI	CTCAG	1 cut(s)	75
BspDI	ATCGAT	1 cut(s)	207
BspFNI	CGCG	1 cut(s)	294
BspHI	TCATGA	1 cut(s)	628
BspLI	GGNNCC	1 cut(s)	406
BspPI	GGATC	1 cut(s)	319
BspT107I	GGYRCC	1 cut(s)	404
BsrDI	GCAATG	1 cut(s)	546
BsrFI	RCCGGY	1 cut(s)	401
BsrGI	TGTACA	2 cut(s)	510, 557
BsrI	ACTGG	1 cut(s)	432
BssAI	RCCGGY	1 cut(s)	401
BssECI	CCNNGG	4 cut(s)	188, 199, 307, 348
BssMI	GATC	3 cut(s)	295, 311, 631
BssNI	GRCGYC	1 cut(s)	152
BssT1I	CCWWGG	3 cut(s)	188, 199, 307
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	2 cut(s)	515, 671
BstACI	GRCGYC	1 cut(s)	152
BstAUI	TGTACA	2 cut(s)	510, 557
BstBAI	YACGTR	1 cut(s)	666
BstDEI	CTNAG	2 cut(s)	83, 175
BstDSI	CCRYGG	1 cut(s)	188
BstF5I	GGATG	1 cut(s)	598
BstFNI	CGCG	1 cut(s)	294
BstKTI	GATC	3 cut(s)	298, 314, 634
BstMBI	GATC	3 cut(s)	295, 311, 631
BstMWI	GCNNNNNNNGC	1 cut(s)	595
BstNI	CCWGG	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	348
BstSFI	CTRYAG	1 cut(s)	16
BstSNI	TACGTA	1 cut(s)	666
BstUI	CGCG	1 cut(s)	294
BstV1I	GCAGC	1 cut(s)	315
BstV2I	GAAGAC	1 cut(s)	227
Bsu15I	ATCGAT	1 cut(s)	207
Bsu36I	CCTNAGG	1 cut(s)	83
BsuI	GTATCC	1 cut(s)	424
BsuRI	GGCC	3 cut(s)	34, 281, 538
BsuTUI	ATCGAT	1 cut(s)	207
BtgI	CCRYGG	1 cut(s)	188
BtsCI	GGATG	1 cut(s)	598
BtsIMutI	CAGTG	1 cut(s)	520
BtuMI	TCGCGA	1 cut(s)	294
CciI	TCATGA	1 cut(s)	628
Cfr10I	RCCGGY	1 cut(s)	401
Cfr13I	GGNCC	2 cut(s)	280, 536
ClaI	ATCGAT	1 cut(s)	207
Csp6I	GTAC	8 cut(s)	10, 88, 405, 511, 558, 607, 663, 667
CspAI	ACCGGT	1 cut(s)	401
CviAII	CATG	7 cut(s)	140, 189, 215, 277, 284, 508, 629
CviJI	RGCY	6 cut(s)	34, 193, 219, 281, 328, 538
CviKI_1	RGCY	6 cut(s)	34, 193, 219, 281, 328, 538
CviQI	GTAC	8 cut(s)	10, 88, 405, 511, 558, 607, 663, 667
DdeI	CTNAG	2 cut(s)	83, 175
DpnI	GATC	3 cut(s)	297, 313, 633
DpnII	GATC	3 cut(s)	295, 311, 631
DriI	GACNNNNNGTC	1 cut(s)	142
EaeI	YGGCCR	1 cut(s)	32
Eam1105I	GACNNNNNGTC	1 cut(s)	142
Eco105I	TACGTA	1 cut(s)	666
Eco130I	CCWWGG	3 cut(s)	188, 199, 307
Eco81I	CCTNAGG	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	348
EcoT14I	CCWWGG	3 cut(s)	188, 199, 307
EcoT22I	ATGCAT	1 cut(s)	646
ErhI	CCWWGG	3 cut(s)	188, 199, 307
FaeI	CATG	7 cut(s)	143, 192, 218, 280, 287, 511, 632
FatI	CATG	7 cut(s)	139, 188, 214, 276, 283, 507, 628
FbaI	TGATCA	1 cut(s)	631
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	1 cut(s)	329
FokI	GGATG	1 cut(s)	605
Fsp4HI	GCNGC	1 cut(s)	329
FspBI	CTAG	1 cut(s)	308
GluI	GCNGC	1 cut(s)	329
HaeIII	GGCC	3 cut(s)	34, 281, 538
HapII	CCGG	1 cut(s)	402
Hin1I	GRCGYC	1 cut(s)	152
Hin1II	CATG	7 cut(s)	143, 192, 218, 280, 287, 511, 632
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HinfI	GANTC	2 cut(s)	265, 367
HpaII	CCGG	1 cut(s)	402
Hpy166II	GTNNAC	2 cut(s)	136, 582
Hpy188I	TCNGA	1 cut(s)	270
Hpy188III	TCNNGA	6 cut(s)	242, 293, 318, 364, 416, 629
Hpy8I	GTNNAC	2 cut(s)	136, 582
HpyAV	CCTTC	2 cut(s)	130, 501
HpyCH4III	ACNGT	2 cut(s)	515, 671
HpyCH4IV	ACGT	2 cut(s)	152, 665
HpyCH4V	TGCA	6 cut(s)	455, 487, 533, 551, 569, 644
HpyF10VI	GCNNNNNNNGC	1 cut(s)	595
HpyF3I	CTNAG	2 cut(s)	83, 175
HpySE526I	ACGT	2 cut(s)	152, 665
Hsp92I	GRCGYC	1 cut(s)	152
Hsp92II	CATG	7 cut(s)	143, 192, 218, 280, 287, 511, 632
KpnI	GGTACC	1 cut(s)	408
Ksp22I	TGATCA	1 cut(s)	631
Kzo9I	GATC	3 cut(s)	295, 311, 631
Lsp1109I	GCAGC	1 cut(s)	315
LweI	GCATC	2 cut(s)	213, 556
MaeI	CTAG	1 cut(s)	308
MaeII	ACGT	2 cut(s)	152, 665
MaeIII	GTNAC	2 cut(s)	144, 499
MalI	GATC	3 cut(s)	297, 313, 633
MboI	GATC	3 cut(s)	295, 311, 631
MboII	GAAGA	1 cut(s)	227
MlsI	TGGCCA	1 cut(s)	34
MluCI	AATT	6 cut(s)	28, 59, 74, 245, 381, 616
MluNI	TGGCCA	1 cut(s)	34
MnlI	CCTC	4 cut(s)	78, 166, 169, 314
Mox20I	TGGCCA	1 cut(s)	34
Mph1103I	ATGCAT	1 cut(s)	646
MscI	TGGCCA	1 cut(s)	34
MseI	TTAA	3 cut(s)	249, 471, 611
MslI	CAYNNNNRTG	1 cut(s)	528
Msp20I	TGGCCA	1 cut(s)	34
MspI	CCGG	1 cut(s)	402
MspR9I	CCNGG	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	350
MvnI	CGCG	1 cut(s)	294
MwoI	GCNNNNNNNGC	1 cut(s)	595
NcoI	CCATGG	1 cut(s)	188
NdeII	GATC	3 cut(s)	295, 311, 631
NlaIII	CATG	7 cut(s)	143, 192, 218, 280, 287, 511, 632
NlaIV	GGNNCC	1 cut(s)	406
NmuCI	GTSAC	1 cut(s)	144
NruI	TCGCGA	1 cut(s)	294
NsiI	ATGCAT	1 cut(s)	646
OliI	CACNNNNGTG	1 cut(s)	528
PagI	TCATGA	1 cut(s)	628
PfeI	GAWTC	2 cut(s)	265, 367
Pfl23II	CGTACG	1 cut(s)	666
PflMI	CCANNNNNTGG	1 cut(s)	324
PinAI	ACCGGT	1 cut(s)	401
PkrI	GCNGC	1 cut(s)	330
Ppu21I	YACGTR	1 cut(s)	666
Psp6I	CCWGG	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	348
PspLI	CGTACG	1 cut(s)	666
PspN4I	GGNNCC	1 cut(s)	406
PspPI	GGNCC	2 cut(s)	280, 536
RruI	TCGCGA	1 cut(s)	294
RsaI	GTAC	8 cut(s)	11, 89, 406, 512, 559, 608, 664, 668
RsaNI	GTAC	8 cut(s)	10, 88, 405, 511, 558, 607, 663, 667
RseI	CAYNNNNRTG	1 cut(s)	528
SalI	GTCGAC	1 cut(s)	134
SaqAI	TTAA	3 cut(s)	249, 471, 611
SatI	GCNGC	1 cut(s)	329
Sau3AI	GATC	3 cut(s)	295, 311, 631
Sau96I	GGNCC	2 cut(s)	280, 536
ScrFI	CCNGG	1 cut(s)	350
SetI	ASST	8 cut(s)	54, 89, 155, 201, 325, 461, 493, 668
SfaNI	GCATC	2 cut(s)	213, 556
SfcI	CTRYAG	1 cut(s)	16
SmiMI	CAYNNNNRTG	1 cut(s)	528
SnaBI	TACGTA	1 cut(s)	666
Sse9I	AATT	6 cut(s)	28, 59, 74, 245, 381, 616
SsiI	CCGC	2 cut(s)	185, 378
SspMI	CTAG	1 cut(s)	308
StyD4I	CCNGG	1 cut(s)	348
StyI	CCWWGG	3 cut(s)	188, 199, 307
TaaI	ACNGT	2 cut(s)	515, 671
TaiI	ACGT	2 cut(s)	155, 668
TaqI	TCGA	2 cut(s)	135, 207
TasI	AATT	6 cut(s)	28, 59, 74, 245, 381, 616
TatI	WGTACW	2 cut(s)	510, 557
TfiI	GAWTC	2 cut(s)	265, 367
Tru1I	TTAA	3 cut(s)	249, 471, 611
Tru9I	TTAA	3 cut(s)	249, 471, 611
TscAI	CASTG	1 cut(s)	520
TseFI	GTSAC	1 cut(s)	144
TseI	GCWGC	1 cut(s)	328
Tsp45I	GTSAC	1 cut(s)	144
TspDTI	ATGAA	2 cut(s)	227, 412
TspRI	CASTG	1 cut(s)	520
Van91I	CCANNNNNTGG	1 cut(s)	324
XapI	RAATTY	1 cut(s)	245
XmaJI	CCTAGG	1 cut(s)	307
XmiI	GTMKAC	1 cut(s)	135
XspI	CTAG	1 cut(s)	308
ZraI	GACGTC	1 cut(s)	153
Zsp2I	ATGCAT	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.