Rh1CG343200

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0004225
Physical Location & Seq
Forward (+)
61758937 .. 61770453
11517 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG343200.1

Sequence Viewer

Length: 3405 bp
ATGGAAATCCGAGCGGATCATGCGCTTGGGGAACGAATAAACTATCATCAAACATGGCGGCAACCATGCTACATAGCCAAAACAGCAGAAGATCTACTCCTCATATCGAGTTTATTCAGAAAAATCTGTGTTTTTAAGCTGGATTACAATTCTGATGGTAGCTACAGATGGATAGAGACAGAGTCCATTGGCAAGGGTGAATTGTATTTGAATAGGGACCAGTCACTACTAACCTCAACAGCCGATGATGCTTCAGAATGCAATAGGAACTCAATTTACTTCACAGACTTGTTGAATTCCGGCAAAGGTGCCTTTGGTTTATTTGCGTATAGTTTAAGAAAGAAAAAAGAAGAAAAGGTCCAAGACTTGTTACAAGCCAAGTACCAGAAGGTGTCAAGATTTTCTGCTGGAGCTTCTACACCAACAGTCACACAATTCACATCTTCATTTGGAACATTTCGGTCAAGAAGGCATATAAACCGAAAAAGATGGGGTTTATGTCTTTCCGTTGCAGATAGCAATCAGCTTACCACAGAAACTGGTGATAAGGCTTCTGAAACTACTTCAACTTCTCCTTCTGAGGATCCATTACCATCTGTGAGTTCTTCATCTTTGGGTATTTCTGCCAATGATAGTCAGTTCCAAACTAGTGCCATTGACGAGCCTAGTTCTCAAACCTCTGAGGCTTCCAATGGATCATCAGTTAATTCAAGTCAGAAACAGGAGGAAGCATCACCTCCACCAAACTCGCAATCTAAATCAAAAAGATCACCACTAACAGCCAGGGAGAGACTGAGGGCAGCCAAGGTTCTCAGCCGTTATAACACGGAGTCAAAGCCAGCTAGAAAGAAATCAGATAGGAGCAAGACTGTACTAGACGCTGCTAGAGCGAGCGACGGTGGGAAAAGAAGATCTGGACTTCCACAGGCCCCTACAAACATTTTCGACGACAGCAAACGAGGAATGCCAAAGGATGGCCTAACTTGGGATTTTCCAGGGGGGAAGCCATCTTTTACAAAGAAACAAGCAGATCTTTTCTTTCCTCCAGATTTCGCAGATGATTTCCCAGTTGCCATGCAGATGTCTCACAAGTACAGTTTGATTTATGTAATCACAAAGCTGGGGCTTCTATTTGTATACGACTTAGAGACAGCTAGTGCAGTTTACAGAAATAGAATTAGTCCAGATCCAATTTTCTTGACGACAGAAGCTTCATCAGTGGGAGGGTTTTATGCTGTTAATAGGCGGGGCCAGGTGTTGTTGGCTACCATTAATGAGCAAACAATTGTGCCTTTTGTCAGTGGTCAGTTAAACAATTTGGAGCTTGCCGTCAATCTGGCAAAAAGAGGAAATCTTCCTGGTGCTGAGAATCTGGTCGTCCAGCGTTTCCAAGAACTGTTTGCCCAAACCAAGTACAAAGAAGCTGCTGAACTGGCTGCTGAGTCCCCGCAAGGAATTCTTCGTACACCGGATACTGTTGCTAAATTTCAGAGTGTTCCTGTCCAAGCTGGGCAAACACCCCCTTTGTTGCAATACTTTGGGACACTCTTAACGAGAGGGAAGCTCAATGCCTTTGAGTCATTGGAATTGTCACGTCTTGTTGTGAACCAGAACAAGAAGAATCTTTTGGAAAACTGGTTGGCAGAGGACAAACTGGAATGCAGTGAGGAACTAGGAGATCTTGTGAAGACTGTGGATAATGATCTGGCTTTGAAAATATACATTAAAGCCAGAGCAACTCCAAAAGTTGTTGCAGCTTTTGCTGAGCGAAGGGAATTTGACAAAATCCTGATCTACTCAAAGCGGGTTGGCTACACACCTGACTATCTGTTCCTTCTGCAAACAATTCTCCGAGCAGACCCACAGGGTGCTGTTAATTTTGCATTGATGATGTCCCAAATGGAGGGTGGTTGTCCTGTTGATTACAACACCATTACAGATCTCTTTCTTCAGAGGAATCTGATTCGTGAGGCAACCGCTTTTCTACTGGATGTTTTGAAGCCAAATCTCCCTGAACACGCCTTCCTGCAGACAAAGGTCCTCGAGATTAACTTGGTTACTTTTCCAAATGTGGCTGATGCCATTTTAGCCAATGGTATGTTCAGTCATTATGATCGTCCTCGAATTGCCCAGTTATGTGAAAAAACTGGTCTTTATGTGCAAGCTTTGCAACACTACTCTGAGTTGCCTGATATTAAGCGTGTCATAGTGAATACACATGCAATAGAGCCGCAGTCACTAGTAGTGTTTTTTGGTACTTTGTCAAAGGAATGGGCATTGGAGTGTATGAAGGATCTCTTGCTGGTCAATTTGAGAGGCAACCTTCAGATAATTGTGCAGGTTGCTAAGGAGTACTCTGATCAGTTGGGTACCGATCAATGCATGAAGCTATTTGAGCAGTTCAAGTCATATGAAGGATTGTACTTCTTCCTCGGATCATTTTTGAGTTCAAGTGTGGATCCTGAAATCCACTTCAAGTACATTGAGGCAGCTGCCAAAACTGGACAAGTTAAAGAGGTCGAGAGAGTTACCAGAGAATCAAATTTCTATGATGCAGAGAAAACAAAGAACTTTTTAATGGAAGCTAAGCTCCCTGATGCACGTCCCCTTATCAATGTTTGCGACCGTTTTGGTTTTGTTCCAGATCTCACCCACTACTTGTACACAAACAATATGCTCCGTTACATTGAGGGTTACGTTCAAAAGGTGAATCCTTCAAATGCTCCTTTAGTTGTGGGACAGTTGCTAGATGACGAGTGCCCTGAAGATTTTATCAAAGGCTTGATCCTTTCTGTACGTTCATTGCTTCCAGTGGAGCCCCTTGTGGAGGAATGTGAGAAGAGGAATCGACTTCGTTTACTCTCTCAGTTCTTGGAGCATCTTGTGAGTGAGGGAAGCCAGGATGTGCACGTCCACAATGCGTTGGGTAAAATCATCATTGATAGTGGAAACAATCCTGAACACTTCCTTACCACAAACCCATATTATGATTCTCGTGTTGTGGGTAAATATTGTGAAAAACGTGATCCTACTCTGGCTGTTGTTGCTTATCGACGTGGACAATGCGATGATGAGCTTATCAATGTTACAAATAAAAACTCGTTGTTCAAATTACAAGCAAGATATGTGGTTGAGAGGATGGATGAGGATCTTTGGGCTAAAGTTCTTGACCCTGAGAATGAATTTAGAAGACAACTTATTGATCAAGTGGTTTCTACTGCCTTGCCCGAAAGTAAGAGCCCAGAACAAGTTTCTGCGGCTGTTAAGGCTTTCATGACTGCTGATTTGCCCCATGAATTAATTGAGCTCCTTGAAAAGATTGTGCTTCAAAACTCTGCCTTCAGTGGGAACTTCAAAACTCTGCCTTCAGTGGGAACTTTAATCTGCAGAATCTGCTCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04144 ko04721 ko04961 ko05016 ko05100 map04142 map04144 map04721 map04961 map05016 map05100
Pfam Domains
Protein Families
Clathrin Clathrin-link Clathrin_H_link Clathrin_propel

Protein Analysis

1134

Amino Acids

127.36

Weight (kDa)

6.4

Isoelectric Point (pI)

46.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 19 - 103 4.5e-07 KIB1-4 beta-propeller
Clathrin-link PF09268 426 - 449 6e-09 Clathrin, heavy-chain linker
Clathrin_H_link PF13838 451 - 516 2.5e-28 Clathrin-H-link
Clathrin PF00637 639 - 774 4e-23 Region in Clathrin and VPS
Clathrin PF00637 783 - 923 7.6e-26 Region in Clathrin and VPS
Clathrin PF00637 932 - 1066 4.8e-32 Region in Clathrin and VPS
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 822
Acc36I ACCTGC 1 cut(s) 2329
Acc65I GGTACC 1 cut(s) 2369
AccB1I GGYRCC 2 cut(s) 308, 2369
AccB7I CCANNNNNTGG 1 cut(s) 974
AccBSI CCGCTC 1 cut(s) 14
AccI GTMKAC 1 cut(s) 1137
AciI CCGC 8 cut(s) 14, 58, 1246, 1448, 1804, 1977, 2231, 3257
AcsI RAATTY 6 cut(s) 295, 1455, 1484, 1775, 2542, 3182
AcuI CTGAAG 6 cut(s) 237, 1934, 2309, 2784, 3325, 3351
AdeI CACNNNGTG 1 cut(s) 1868
AfiI CCNNNNNNNGG 6 cut(s) 974, 985, 1903, 2827, 3345, 3371
AhlI ACTAGT 2 cut(s) 647, 2239
AjiI CACGTC 4 cut(s) 1595, 2603, 2911, 3056
AjnI CCWGG 5 cut(s) 782, 994, 1251, 1357, 2898
AjuI GAANNNNNNNTTGG 4 cut(s) 1610, 1642, 2084, 2116
AloI GAACNNNNNNTCC 2 cut(s) 2007, 2039
Alw21I GWGCWC 2 cut(s) 2910, 3309
Alw26I GTCTC 4 cut(s) 170, 784, 1089, 1142
Alw44I GTGCAC 1 cut(s) 2906
AlwNI CAGNNNCTG 2 cut(s) 539, 3393
Ama87I CYCGRG 1 cut(s) 2042
AoxI GGCC 3 cut(s) 927, 976, 1249
ApaLI GTGCAC 1 cut(s) 2906
ApeKI GCWGC 7 cut(s) 800, 881, 1424, 1436, 1754, 2489, 2492
ApoI RAATTY 6 cut(s) 295, 1455, 1484, 1775, 2542, 3182
ArsI GACNNNNNNTTYG 2 cut(s) 3268, 3300
AseI ATTAAT 2 cut(s) 1272, 3299
Asp718I GGTACC 1 cut(s) 2369
AspLEI GCGC 1 cut(s) 25
AspS9I GGNCC 5 cut(s) 217, 358, 928, 1249, 2038
AsuHPI GGTGA 6 cut(s) 209, 554, 726, 762, 2641, 2719
AvaI CYCGRG 1 cut(s) 2042
AvaII GGWCC 3 cut(s) 217, 358, 2038
BaeGI GKGCMC 2 cut(s) 2762, 2910
BamHI GGATCC 2 cut(s) 583, 2458
BanI GGYRCC 2 cut(s) 308, 2369
BanII GRGCYC 3 cut(s) 2820, 3242, 3309
BauI CACGAG 1 cut(s) 2994
BbsI GAAGAC 2 cut(s) 1694, 3196
Bbv12I GWGCWC 2 cut(s) 2910, 3309
BbvI GCAGC 7 cut(s) 812, 868, 1411, 1423, 1766, 2479, 2501
BccI CCATC 7 cut(s) 149, 162, 483, 601, 968, 1015, 3133
BceAI ACGGC 2 cut(s) 801, 1313
BciT130I CCWGG 5 cut(s) 784, 996, 1253, 1359, 2900
BciVI GTATCC 1 cut(s) 1465
BclI TGATCA 2 cut(s) 2359, 3202
BcoDI GTCTC 4 cut(s) 170, 784, 1089, 1142
BcuI ACTAGT 2 cut(s) 647, 2239
BfaI CTAG 9 cut(s) 648, 666, 843, 875, 885, 1155, 1673, 2240, 2747
BfmI CTRYAG 3 cut(s) 163, 2027, 3385
BfuAI ACCTGC 1 cut(s) 2329
BfuI GTATCC 1 cut(s) 1465
BglII AGATCT 6 cut(s) 91, 911, 1030, 1678, 1939, 2644
BlpI GCTNAGC 2 cut(s) 1764, 2586
BmcAI AGTACT 1 cut(s) 2354
Bme1390I CCNGG 5 cut(s) 784, 996, 1253, 1359, 2900
Bme18I GGWCC 3 cut(s) 217, 358, 2038
BmeT110I CYCGRG 1 cut(s) 2042
BmgBI CACGTC 4 cut(s) 1595, 2603, 2911, 3056
BmgT120I GGNCC 5 cut(s) 217, 358, 928, 1249, 2038
BmiI GGNNCC 8 cut(s) 218, 310, 585, 930, 1250, 2371, 2460, 2817
BmrFI CCNGG 5 cut(s) 784, 996, 1253, 1359, 2900
BmrI ACTGGG 2 cut(s) 1061, 2125
BmsI GCATC 6 cut(s) 238, 740, 2068, 2542, 2587, 2887
BmuI ACTGGG 2 cut(s) 1061, 2125
BoxI GACNNNNGTC 1 cut(s) 2036
BpiI GAAGAC 2 cut(s) 1694, 3196
BplI GAGNNNNNCTC 2 cut(s) 1548, 1580
BpmI CTGGAG 2 cut(s) 429, 1029
Bpu10I CCTNAGC 1 cut(s) 2346
Bpu1102I GCTNAGC 2 cut(s) 1764, 2586
BsaBI GATNNNNATC 3 cut(s) 519, 1701, 3147
BsaJI CCNNGG 4 cut(s) 783, 804, 995, 2431
BsaWI WCCGGW 1 cut(s) 1468
BsaXI ACNNNNNCTCC 2 cut(s) 1668, 1698
Bsc4I CCNNNNNNNGG 6 cut(s) 974, 985, 1903, 2827, 3345, 3371
Bse3DI GCAATG 1 cut(s) 2801
Bse8I GATNNNNATC 3 cut(s) 519, 1701, 3147
BseBI CCWGG 5 cut(s) 784, 996, 1253, 1359, 2900
BseDI CCNNGG 4 cut(s) 783, 804, 995, 2431
BseGI GGATG 5 cut(s) 979, 1996, 2908, 3144, 3148
BseJI GATNNNNATC 3 cut(s) 519, 1701, 3147
BseLI CCNNNNNNNGG 6 cut(s) 974, 985, 1903, 2827, 3345, 3371
BseMI GCAATG 1 cut(s) 2801
BseRI GAGGAG 1 cut(s) 89
BseSI GKGCMC 2 cut(s) 2762, 2910
BseXI GCAGC 7 cut(s) 812, 868, 1411, 1423, 1766, 2479, 2501
BseYI CCCAGC 2 cut(s) 1120, 1508
BsgI GTGCAG 2 cut(s) 1179, 2357
Bsh1285I CGRYCG 1 cut(s) 2626
BshFI GGCC 3 cut(s) 929, 978, 1251
BshNI GGYRCC 2 cut(s) 308, 2369
BsiEI CGRYCG 1 cut(s) 2626
BsiHKAI GWGCWC 2 cut(s) 2910, 3309
BsiHKCI CYCGRG 1 cut(s) 2042
BsiSI CCGG 2 cut(s) 300, 1469
BslFI GGGAC 6 cut(s) 230, 1429, 1555, 1879, 2589, 2751
BslI CCNNNNNNNGG 6 cut(s) 974, 985, 1903, 2827, 3345, 3371
BsmAI GTCTC 4 cut(s) 170, 784, 1089, 1142
BsmFI GGGAC 6 cut(s) 230, 1429, 1555, 1879, 2589, 2751
BsmI GAATGC 3 cut(s) 263, 969, 1664
BsnI GGCC 3 cut(s) 929, 978, 1251
BsoBI CYCGRG 1 cut(s) 2042
Bsp1286I GDGCHC 5 cut(s) 2762, 2820, 2910, 3242, 3309
Bsp1407I TGTACA 1 cut(s) 2661
Bsp1720I GCTNAGC 2 cut(s) 1764, 2586
BspACI CCGC 8 cut(s) 14, 58, 1246, 1448, 1804, 1977, 2231, 3257
BspANI GGCC 3 cut(s) 929, 978, 1251
BspHI TCATGA 1 cut(s) 3273
BspLI GGNNCC 8 cut(s) 218, 310, 585, 930, 1250, 2371, 2460, 2817
BspMAI CTGCAG 2 cut(s) 2031, 3389
BspMI ACCTGC 1 cut(s) 2329
BspT107I GGYRCC 2 cut(s) 308, 2369
BsrBI CCGCTC 1 cut(s) 14
BsrDI GCAATG 1 cut(s) 2801
BsrGI TGTACA 1 cut(s) 2661
BssECI CCNNGG 4 cut(s) 783, 804, 995, 2431
BssNAI GTATAC 1 cut(s) 1138
BssSI CACGAG 1 cut(s) 2994
BssT1I CCWWGG 1 cut(s) 804
Bst1107I GTATAC 1 cut(s) 1138
Bst2BI CACGAG 1 cut(s) 2994
Bst2UI CCWGG 5 cut(s) 784, 996, 1253, 1359, 2900
Bst4CI ACNGT 9 cut(s) 427, 871, 899, 1097, 1398, 1477, 1693, 2627, 2742
Bst6I CTCTTC 1 cut(s) 2834
BstAPI GCANNNNNTGC 3 cut(s) 1760, 2167, 3393
BstAUI TGTACA 1 cut(s) 2661
BstC8I GCNNGC 4 cut(s) 840, 892, 1326, 2163
BstENI CCTNNNNNAGG 1 cut(s) 2825
BstF5I GGATG 5 cut(s) 979, 1996, 2908, 3144, 3148
BstHHI GCGC 1 cut(s) 25
BstMAI GTCTC 4 cut(s) 170, 784, 1089, 1142
BstMCI CGRYCG 1 cut(s) 2626
BstNI CCWGG 5 cut(s) 784, 996, 1253, 1359, 2900
BstNSI RCATGY 1 cut(s) 2222
BstPAI GACNNNNGTC 1 cut(s) 2036
BstSCI CCNGG 5 cut(s) 782, 994, 1251, 1357, 2898
BstSFI CTRYAG 3 cut(s) 163, 2027, 3385
BstSLI GKGCMC 2 cut(s) 2762, 2910
BstV1I GCAGC 7 cut(s) 812, 868, 1411, 1423, 1766, 2479, 2501
BstV2I GAAGAC 2 cut(s) 1694, 3196
BstZ17I GTATAC 1 cut(s) 1138
BsuI GTATCC 1 cut(s) 1465
BsuRI GGCC 3 cut(s) 929, 978, 1251
BtgZI GCGATG 1 cut(s) 3081
BtrI CACGTC 4 cut(s) 1595, 2603, 2911, 3056
BtsCI GGATG 5 cut(s) 979, 1996, 2908, 3144, 3148
BtsI GCAGTG 1 cut(s) 1669
BtsIMutI CAGTG 6 cut(s) 1224, 1306, 1669, 2817, 3349, 3375
BveI ACCTGC 1 cut(s) 2329
Cac8I GCNNGC 4 cut(s) 840, 892, 1326, 2163
CaiI CAGNNNCTG 2 cut(s) 539, 3393
CciI TCATGA 1 cut(s) 3273
CfoI GCGC 1 cut(s) 25
Cfr13I GGNCC 5 cut(s) 217, 358, 928, 1249, 2038
CseI GACGC 1 cut(s) 887
CspCI CAANNNNNGTGG 2 cut(s) 3108, 3143
CviAII CATG 8 cut(s) 20, 54, 66, 1075, 2219, 2383, 3274, 3293
DraIII CACNNNGTG 1 cut(s) 1868
Eam1104I CTCTTC 1 cut(s) 2834
EarI CTCTTC 1 cut(s) 2834
Ecl136II GAGCTC 1 cut(s) 3307
Eco130I CCWWGG 1 cut(s) 804
Eco24I GRGCYC 3 cut(s) 2820, 3242, 3309
Eco47I GGWCC 3 cut(s) 217, 358, 2038
Eco53kI GAGCTC 1 cut(s) 3307
Eco57I CTGAAG 6 cut(s) 237, 1934, 2309, 2784, 3325, 3351
Eco88I CYCGRG 1 cut(s) 2042
EcoICRI GAGCTC 1 cut(s) 3307
EcoNI CCTNNNNNAGG 1 cut(s) 2825
EcoO109I RGGNCCY 2 cut(s) 928, 2038
EcoRI GAATTC 2 cut(s) 295, 1455
EcoRII CCWGG 5 cut(s) 782, 994, 1251, 1357, 2898
EcoT14I CCWWGG 1 cut(s) 804
EcoT22I ATGCAT 1 cut(s) 2384
EcoT38I GRGCYC 3 cut(s) 2820, 3242, 3309
ErhI CCWWGG 1 cut(s) 804
FaeI CATG 8 cut(s) 23, 57, 69, 1078, 2222, 2386, 3277, 3296
FalI AAGNNNNNCTT 6 cut(s) 1017, 1049, 1443, 1475, 2282, 2314
FaqI GGGAC 6 cut(s) 230, 1429, 1555, 1879, 2589, 2751
FatI CATG 8 cut(s) 19, 53, 65, 1074, 2218, 2382, 3273, 3292
FauI CCCGC 3 cut(s) 1239, 1455, 1797
FauNDI CATATG 1 cut(s) 2410
FbaI TGATCA 2 cut(s) 2359, 3202
FblI GTMKAC 1 cut(s) 1137
FokI GGATG 5 cut(s) 986, 2003, 2915, 3151, 3155
FriOI GRGCYC 3 cut(s) 2820, 3242, 3309
FspBI CTAG 9 cut(s) 648, 666, 843, 875, 885, 1155, 1673, 2240, 2747
GlaI GCGC 1 cut(s) 24
GsaI CCCAGC 2 cut(s) 1124, 1512
GsuI CTGGAG 2 cut(s) 429, 1029
HaeIII GGCC 3 cut(s) 929, 978, 1251
HapII CCGG 2 cut(s) 300, 1469
HgaI GACGC 1 cut(s) 887
HhaI GCGC 1 cut(s) 25
Hin1II CATG 8 cut(s) 23, 57, 69, 1078, 2222, 2386, 3277, 3296
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HindIII AAGCTT 2 cut(s) 1209, 2163
HpaII CCGG 2 cut(s) 300, 1469
HphI GGTGA 6 cut(s) 209, 554, 726, 762, 2641, 2719
Hpy166II GTNNAC 9 cut(s) 1138, 1165, 1466, 1606, 2664, 2858, 2908, 2914, 3059
Hpy8I GTNNAC 9 cut(s) 1138, 1165, 1466, 1606, 2664, 2858, 2908, 2914, 3059
Hpy99I CGWCG 3 cut(s) 899, 950, 3057
HpyCH4III ACNGT 9 cut(s) 427, 871, 899, 1097, 1398, 1477, 1693, 2627, 2742
HpyCH4IV ACGT 7 cut(s) 1594, 2602, 2697, 2797, 2910, 3022, 3055
HpySE526I ACGT 7 cut(s) 1594, 2602, 2697, 2797, 2910, 3022, 3055
Hsp92II CATG 8 cut(s) 23, 57, 69, 1078, 2222, 2386, 3277, 3296
HspAI GCGC 1 cut(s) 23
KpnI GGTACC 1 cut(s) 2373
Ksp22I TGATCA 2 cut(s) 2359, 3202
LmnI GCTCC 9 cut(s) 410, 861, 1321, 2595, 2682, 2728, 2815, 2875, 3312
Lsp1109I GCAGC 7 cut(s) 812, 868, 1411, 1423, 1766, 2479, 2501
LweI GCATC 6 cut(s) 238, 740, 2068, 2542, 2587, 2887
MaeI CTAG 9 cut(s) 648, 666, 843, 875, 885, 1155, 1673, 2240, 2747
MaeII ACGT 7 cut(s) 1594, 2602, 2697, 2797, 2910, 3022, 3055
MbiI CCGCTC 1 cut(s) 14
MfeI CAATTG 1 cut(s) 1284
MhlI GDGCHC 5 cut(s) 2762, 2820, 2910, 3242, 3309
MlyI GAGTC 4 cut(s) 191, 839, 1451, 1586
Mph1103I ATGCAT 1 cut(s) 2384
MslI CAYNNNNRTG 2 cut(s) 1079, 2281
MspA1I CMGCKG 1 cut(s) 2492
MspI CCGG 2 cut(s) 300, 1469
MspR9I CCNGG 5 cut(s) 784, 996, 1253, 1359, 2900
MunI CAATTG 1 cut(s) 1284
Mva1269I GAATGC 3 cut(s) 263, 969, 1664
MvaI CCWGG 5 cut(s) 784, 996, 1253, 1359, 2900
NdeI CATATG 1 cut(s) 2410
NlaIII CATG 8 cut(s) 23, 57, 69, 1078, 2222, 2386, 3277, 3296
NlaIV GGNNCC 8 cut(s) 218, 310, 585, 930, 1250, 2371, 2460, 2817
NmuCI GTSAC 4 cut(s) 222, 427, 1590, 2235
NsiI ATGCAT 1 cut(s) 2384
NspI RCATGY 1 cut(s) 2222
PaeR7I CTCGAG 1 cut(s) 2042
PagI TCATGA 1 cut(s) 3273
PctI GAATGC 3 cut(s) 263, 969, 1664
PfeI GAWTC 9 cut(s) 1369, 1621, 1957, 1963, 2537, 2710, 2845, 2990, 3390
PflFI GACNNNGTC 1 cut(s) 181
PflMI CCANNNNNTGG 1 cut(s) 974
PleI GAGTC 4 cut(s) 190, 838, 1450, 1585
PpsI GAGTC 4 cut(s) 190, 838, 1450, 1585
PpuMI RGGWCCY 1 cut(s) 2038
PshAI GACNNNNGTC 1 cut(s) 2036
PshBI ATTAAT 2 cut(s) 1272, 3299
PsiI TTATAA 1 cut(s) 822
Psp124BI GAGCTC 1 cut(s) 3309
Psp5II RGGWCCY 1 cut(s) 2038
Psp6I CCWGG 5 cut(s) 782, 994, 1251, 1357, 2898
PspFI CCCAGC 2 cut(s) 1120, 1508
PspGI CCWGG 5 cut(s) 782, 994, 1251, 1357, 2898
PspN4I GGNNCC 8 cut(s) 218, 310, 585, 930, 1250, 2371, 2460, 2817
PspPI GGNCC 5 cut(s) 217, 358, 928, 1249, 2038
PspPPI RGGWCCY 1 cut(s) 2038
PsrI GAACNNNNNNTAC 2 cut(s) 260, 292
PstI CTGCAG 2 cut(s) 2031, 3389
PstNI CAGNNNCTG 2 cut(s) 539, 3393
PsyI GACNNNGTC 1 cut(s) 181
PvuII CAGCTG 1 cut(s) 2492
RseI CAYNNNNRTG 2 cut(s) 1079, 2281
SacI GAGCTC 1 cut(s) 3309
Sau96I GGNCC 5 cut(s) 217, 358, 928, 1249, 2038
ScaI AGTACT 1 cut(s) 2354
SchI GAGTC 4 cut(s) 191, 839, 1451, 1586
ScrFI CCNGG 5 cut(s) 784, 996, 1253, 1359, 2900
SduI GDGCHC 5 cut(s) 2762, 2820, 2910, 3242, 3309
SfaNI GCATC 6 cut(s) 238, 740, 2068, 2542, 2587, 2887
SfcI CTRYAG 3 cut(s) 163, 2027, 3385
Sfr274I CTCGAG 1 cut(s) 2042
SinI GGWCC 3 cut(s) 217, 358, 2038
SlaI CTCGAG 1 cut(s) 2042
SmiMI CAYNNNNRTG 2 cut(s) 1079, 2281
SmlI CTYRAG 1 cut(s) 2042
SmoI CTYRAG 1 cut(s) 2042
SpeI ACTAGT 2 cut(s) 647, 2239
SsiI CCGC 8 cut(s) 14, 58, 1246, 1448, 1804, 1977, 2231, 3257
SspI AATATT 1 cut(s) 3011
SspMI CTAG 9 cut(s) 648, 666, 843, 875, 885, 1155, 1673, 2240, 2747
SstI GAGCTC 1 cut(s) 3309
StyD4I CCNGG 5 cut(s) 782, 994, 1251, 1357, 2898
StyI CCWWGG 1 cut(s) 804
TaaI ACNGT 9 cut(s) 427, 871, 899, 1097, 1398, 1477, 1693, 2627, 2742
TaiI ACGT 7 cut(s) 1597, 2605, 2700, 2800, 2913, 3025, 3058
TaqI TCGA 7 cut(s) 107, 945, 2043, 2122, 2520, 2848, 3052
TaqII GACCGA 1 cut(s) 450
TatI WGTACW 7 cut(s) 871, 1092, 1413, 2352, 2421, 2478, 2661
TauI GCSGC 3 cut(s) 61, 2233, 3260
TfiI GAWTC 9 cut(s) 1369, 1621, 1957, 1963, 2537, 2710, 2845, 2990, 3390
TscAI CASTG 6 cut(s) 1224, 1306, 1669, 2817, 3349, 3375
TseFI GTSAC 4 cut(s) 222, 427, 1590, 2235
TseI GCWGC 7 cut(s) 800, 881, 1424, 1436, 1754, 2489, 2492
Tsp45I GTSAC 4 cut(s) 222, 427, 1590, 2235
TspGWI ACGGA 3 cut(s) 496, 842, 2669
TspRI CASTG 6 cut(s) 1224, 1306, 1669, 2817, 3349, 3375
Tth111I GACNNNGTC 1 cut(s) 181
Van91I CCANNNNNTGG 1 cut(s) 974
VneI GTGCAC 1 cut(s) 2906
VpaK11BI GGWCC 3 cut(s) 217, 358, 2038
VspI ATTAAT 2 cut(s) 1272, 3299
XagI CCTNNNNNAGG 1 cut(s) 2825
XapI RAATTY 6 cut(s) 295, 1455, 1484, 1775, 2542, 3182
XceI RCATGY 1 cut(s) 2222
XcmI CCANNNNNNNNNTGG 1 cut(s) 1904
XhoI CTCGAG 1 cut(s) 2042
XmiI GTMKAC 1 cut(s) 1137
XspI CTAG 9 cut(s) 648, 666, 843, 875, 885, 1155, 1673, 2240, 2747
ZrmI AGTACT 1 cut(s) 2354
Zsp2I ATGCAT 1 cut(s) 2384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.