Rw1G032280

f-box protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
60599275 .. 60600416
1142 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G032280.1

Sequence Viewer

Length: 1068 bp
ATGGCGGACTGTAGAAAACCAAATTGGCCAGAACTTCCCATTGACCTTTTTGAATTGATTTTATCAAAATTATCCCTGAGGTACATACTGCGTTTGAAAGCAGTTTCTCGTTCCTTCTACAACGCTGTCGACCATGTGTTACAGACGTCGTCCTCATCATTCACTTGCTTAGCAGAACCGCCATGGCTCTACCTTGGCATCGATGGTCATGGCTTTCGTTTTCAAAGTCTTCATCAGGAATTCAAGTTTTACCACTTGAATCAGAACAACATGGCCCAGGAGTTTCGCGATCACTTTTGCCTAGGATCGTCCAGAGATTTTACGCTCTTGAATCCTTTATCCGCAATTCAACTTCCACTCCCTACCGGTACCACTTTTCCAGACTTCATACTGGATACTGATTGCTTATATTATCGTGCAAGGTTTAGCACATTTAATGTATTGTCTTTGCAACCTTCTCTGGTTACAATCATGTACAGTGTCAAACACTTTAGTGCAGGGCCATACAGCATTGCATTTTGTACAACAGATGCAGATGGTAAGTGGACAGAGCAGGATGAGCGTGAATGGTACTTAAATAATTTACGTACGGTTGAAGTACGGGATTTCTCGACTTCCTTTCCCACTAAAAAGATGGAAATCCGAGCGGATCATGCACTTGGGGAACGAATAAACTATCATCAAACATGGCCGCAACCATGCTACATAGCCAAAACAGCAGAAGATACTCCTCGTATCGAGTACTTATTCAGAAAAATTTGTGTTTTTAAGCTGGATTACAATTCCGATGGTAGCTACAGATGGATAGAGACAGAGTCCATTGGCAAGGGTGAATTGTATTTGAATATGGACCAGTCACTACTAACCTCAACAGCCGATGATGCTTCAGAACGCAACAGGAACTCAATTTACTTCACAAACTTGTTGAATTCCGGCAAAGGTGCCTTTGGTTTATTTGCGTATAGTTTAAGAAAGAAAAAAGAAGAAAAGGTCCAAGACTTGGTATTTTGGATGCCATATGGATCTATTTTGTTTGATCCTAATCTTTCATTCTTTCTTAGGCTTTAA

Protein Analysis

355

Amino Acids

41.35

Weight (kDa)

6.26

Isoelectric Point (pI)

39.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 9 - 46 8.4e-08 F-box domain
Beta-prop_KIB1-4 PF03478 100 - 312 7.8e-10 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 149
Acc65I GGTACC 1 cut(s) 368
AccB1I GGYRCC 2 cut(s) 368, 941
AccB7I CCANNNNNTGG 1 cut(s) 1000
AccBSI CCGCTC 1 cut(s) 647
AccI GTMKAC 1 cut(s) 129
AccII CGCG 1 cut(s) 288
AciI CCGC 5 cut(s) 5, 179, 342, 647, 692
AclWI GGATC 4 cut(s) 313, 657, 1030, 1031
AcoI YGGCCR 2 cut(s) 26, 689
AcsI RAATTY 3 cut(s) 239, 756, 928
AcuI CTGAAG 1 cut(s) 870
AcyI GRCGYC 1 cut(s) 146
AfaI GTAC 8 cut(s) 83, 370, 476, 523, 572, 589, 600, 743
AfiI CCNNNNNNNGG 1 cut(s) 1000
AgeI ACCGGT 1 cut(s) 365
AjnI CCWGG 1 cut(s) 276
AjuI GAANNNNNNNTTGG 2 cut(s) 7, 39
AleI CACNNNNGTG 1 cut(s) 492
AluBI AGCT 2 cut(s) 772, 795
AluI AGCT 2 cut(s) 772, 795
Alw26I GTCTC 1 cut(s) 803
AlwI GGATC 4 cut(s) 313, 657, 1030, 1031
AoxI GGCC 4 cut(s) 26, 273, 500, 689
ApoI RAATTY 3 cut(s) 239, 756, 928
AsiGI ACCGGT 1 cut(s) 365
Asp718I GGTACC 1 cut(s) 368
AspA2I CCTAGG 1 cut(s) 301
AspS9I GGNCC 4 cut(s) 274, 500, 850, 991
AsuHPI GGTGA 1 cut(s) 842
AvaII GGWCC 2 cut(s) 850, 991
AvrII CCTAGG 1 cut(s) 301
AxyI CCTNAGG 1 cut(s) 77
BalI TGGCCA 1 cut(s) 28
BanI GGYRCC 2 cut(s) 368, 941
BbsI GAAGAC 1 cut(s) 221
BccI CCATC 5 cut(s) 197, 530, 628, 782, 795
BciT130I CCWGG 1 cut(s) 278
BciVI GTATCC 1 cut(s) 388
BcoDI GTCTC 1 cut(s) 803
BfaI CTAG 1 cut(s) 302
BfmI CTRYAG 2 cut(s) 10, 796
BfuI GTATCC 1 cut(s) 388
BisI GCNGC 1 cut(s) 692
BlnI CCTAGG 1 cut(s) 301
BlpI GCTNAGC 1 cut(s) 169
BlsI GCNGC 1 cut(s) 693
BmcAI AGTACT 1 cut(s) 743
Bme1390I CCNGG 1 cut(s) 278
Bme18I GGWCC 2 cut(s) 850, 991
BmgT120I GGNCC 4 cut(s) 274, 500, 850, 991
BmiI GGNNCC 2 cut(s) 370, 943
BmrFI CCNGG 1 cut(s) 278
BmsI GCATC 4 cut(s) 207, 520, 871, 1002
BpiI GAAGAC 1 cut(s) 221
Bpu1102I GCTNAGC 1 cut(s) 169
Bsa29I ATCGAT 1 cut(s) 201
BsaAI YACGTR 1 cut(s) 587
BsaBI GATNNNNATC 2 cut(s) 638, 1041
BsaHI GRCGYC 1 cut(s) 146
BsaJI CCNNGG 4 cut(s) 182, 193, 276, 301
BsaWI WCCGGW 1 cut(s) 365
BsaXI ACNNNNNCTCC 2 cut(s) 342, 372
Bsc4I CCNNNNNNNGG 1 cut(s) 1000
Bse118I RCCGGY 1 cut(s) 365
Bse1I ACTGG 2 cut(s) 396, 853
Bse21I CCTNAGG 1 cut(s) 77
Bse3DI GCAATG 1 cut(s) 510
Bse8I GATNNNNATC 2 cut(s) 638, 1041
BseBI CCWGG 1 cut(s) 278
BseCI ATCGAT 1 cut(s) 201
BseDI CCNNGG 4 cut(s) 182, 193, 276, 301
BseGI GGATG 2 cut(s) 562, 1017
BseJI GATNNNNATC 2 cut(s) 638, 1041
BseLI CCNNNNNNNGG 1 cut(s) 1000
BseMI GCAATG 1 cut(s) 510
BseMII CTCAG 1 cut(s) 68
BseNI ACTGG 2 cut(s) 396, 853
BseRI GAGGAG 1 cut(s) 720
BsgI GTGCAG 1 cut(s) 516
Bsh1236I CGCG 1 cut(s) 288
BshFI GGCC 4 cut(s) 28, 275, 502, 691
BshNI GGYRCC 2 cut(s) 368, 941
BshTI ACCGGT 1 cut(s) 365
BshVI ATCGAT 1 cut(s) 201
BsiSI CCGG 2 cut(s) 366, 933
BsiWI CGTACG 1 cut(s) 587
BslI CCNNNNNNNGG 1 cut(s) 1000
BsmAI GTCTC 1 cut(s) 803
BsnI GGCC 4 cut(s) 28, 275, 502, 691
Bsp1407I TGTACA 2 cut(s) 474, 521
Bsp143I GATC 5 cut(s) 289, 305, 649, 1022, 1036
Bsp1720I GCTNAGC 1 cut(s) 169
Bsp19I CCATGG 1 cut(s) 182
Bsp68I TCGCGA 1 cut(s) 288
BspACI CCGC 5 cut(s) 5, 179, 342, 647, 692
BspANI GGCC 4 cut(s) 28, 275, 502, 691
BspCNI CTCAG 1 cut(s) 69
BspDI ATCGAT 1 cut(s) 201
BspFNI CGCG 1 cut(s) 288
BspLI GGNNCC 2 cut(s) 370, 943
BspPI GGATC 4 cut(s) 313, 657, 1030, 1031
BspT107I GGYRCC 2 cut(s) 368, 941
BsrBI CCGCTC 1 cut(s) 647
BsrDI GCAATG 1 cut(s) 510
BsrFI RCCGGY 1 cut(s) 365
BsrGI TGTACA 2 cut(s) 474, 521
BsrI ACTGG 2 cut(s) 396, 853
BssAI RCCGGY 1 cut(s) 365
BssECI CCNNGG 4 cut(s) 182, 193, 276, 301
BssMI GATC 5 cut(s) 289, 305, 649, 1022, 1036
BssNI GRCGYC 1 cut(s) 146
BssT1I CCWWGG 3 cut(s) 182, 193, 301
Bst2UI CCWGG 1 cut(s) 278
Bst4CI ACNGT 3 cut(s) 11, 479, 592
BstACI GRCGYC 1 cut(s) 146
BstAUI TGTACA 2 cut(s) 474, 521
BstBAI YACGTR 1 cut(s) 587
BstDEI CTNAG 3 cut(s) 77, 169, 1058
BstDSI CCRYGG 1 cut(s) 182
BstF5I GGATG 2 cut(s) 562, 1017
BstFNI CGCG 1 cut(s) 288
BstKTI GATC 5 cut(s) 292, 308, 652, 1025, 1039
BstMAI GTCTC 1 cut(s) 803
BstMBI GATC 5 cut(s) 289, 305, 649, 1022, 1036
BstMWI GCNNNNNNNGC 4 cut(s) 559, 653, 716, 881
BstNI CCWGG 1 cut(s) 278
BstSCI CCNGG 1 cut(s) 276
BstSFI CTRYAG 2 cut(s) 10, 796
BstSNI TACGTA 1 cut(s) 587
BstUI CGCG 1 cut(s) 288
BstV2I GAAGAC 1 cut(s) 221
BstX2I RGATCY 1 cut(s) 1022
BstYI RGATCY 1 cut(s) 1022
Bsu15I ATCGAT 1 cut(s) 201
Bsu36I CCTNAGG 1 cut(s) 77
BsuI GTATCC 1 cut(s) 388
BsuRI GGCC 4 cut(s) 28, 275, 502, 691
BsuTUI ATCGAT 1 cut(s) 201
BtgI CCRYGG 1 cut(s) 182
BtsCI GGATG 2 cut(s) 562, 1017
BtsIMutI CAGTG 1 cut(s) 484
BtuMI TCGCGA 1 cut(s) 288
Cfr10I RCCGGY 1 cut(s) 365
Cfr13I GGNCC 4 cut(s) 274, 500, 850, 991
ClaI ATCGAT 1 cut(s) 201
Csp6I GTAC 8 cut(s) 82, 369, 475, 522, 571, 588, 599, 742
CspAI ACCGGT 1 cut(s) 365
CviAII CATG 8 cut(s) 134, 183, 209, 271, 472, 653, 687, 699
CviQI GTAC 8 cut(s) 82, 369, 475, 522, 571, 588, 599, 742
DdeI CTNAG 3 cut(s) 77, 169, 1058
DpnI GATC 5 cut(s) 291, 307, 651, 1024, 1038
DpnII GATC 5 cut(s) 289, 305, 649, 1022, 1036
EaeI YGGCCR 2 cut(s) 26, 689
EciI GGCGGA 1 cut(s) 20
Eco105I TACGTA 1 cut(s) 587
Eco130I CCWWGG 3 cut(s) 182, 193, 301
Eco47I GGWCC 2 cut(s) 850, 991
Eco57I CTGAAG 1 cut(s) 870
Eco81I CCTNAGG 1 cut(s) 77
EcoRI GAATTC 2 cut(s) 239, 928
EcoRII CCWGG 1 cut(s) 276
EcoT14I CCWWGG 3 cut(s) 182, 193, 301
ErhI CCWWGG 3 cut(s) 182, 193, 301
FaeI CATG 8 cut(s) 137, 186, 212, 274, 475, 656, 690, 702
FatI CATG 8 cut(s) 133, 182, 208, 270, 471, 652, 686, 698
FauNDI CATATG 1 cut(s) 1018
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 1 cut(s) 692
FokI GGATG 2 cut(s) 569, 1024
Fsp4HI GCNGC 1 cut(s) 692
FspBI CTAG 1 cut(s) 302
GluI GCNGC 1 cut(s) 692
HaeIII GGCC 4 cut(s) 28, 275, 502, 691
HapII CCGG 2 cut(s) 366, 933
Hin1I GRCGYC 1 cut(s) 146
Hin1II CATG 8 cut(s) 137, 186, 212, 274, 475, 656, 690, 702
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HinfI GANTC 3 cut(s) 259, 331, 815
HpaII CCGG 2 cut(s) 366, 933
HphI GGTGA 1 cut(s) 842
Hpy166II GTNNAC 2 cut(s) 130, 546
Hpy188I TCNGA 5 cut(s) 264, 644, 752, 787, 889
Hpy188III TCNNGA 6 cut(s) 236, 287, 312, 328, 380, 610
Hpy8I GTNNAC 2 cut(s) 130, 546
Hpy99I CGWCG 1 cut(s) 151
HpyAV CCTTC 2 cut(s) 124, 465
HpyCH4III ACNGT 3 cut(s) 11, 479, 592
HpyCH4IV ACGT 2 cut(s) 146, 586
HpyCH4V TGCA 6 cut(s) 419, 451, 497, 515, 533, 656
HpyF10VI GCNNNNNNNGC 4 cut(s) 559, 653, 716, 881
HpyF3I CTNAG 3 cut(s) 77, 169, 1058
HpySE526I ACGT 2 cut(s) 146, 586
Hsp92I GRCGYC 1 cut(s) 146
Hsp92II CATG 8 cut(s) 137, 186, 212, 274, 475, 656, 690, 702
KpnI GGTACC 1 cut(s) 372
Kzo9I GATC 5 cut(s) 289, 305, 649, 1022, 1036
LweI GCATC 4 cut(s) 207, 520, 871, 1002
MaeI CTAG 1 cut(s) 302
MaeII ACGT 2 cut(s) 146, 586
MaeIII GTNAC 3 cut(s) 138, 463, 855
MalI GATC 5 cut(s) 291, 307, 651, 1024, 1038
MbiI CCGCTC 1 cut(s) 647
MboI GATC 5 cut(s) 289, 305, 649, 1022, 1036
MboII GAAGA 3 cut(s) 221, 734, 995
MflI RGATCY 1 cut(s) 1022
MlsI TGGCCA 1 cut(s) 28
MluNI TGGCCA 1 cut(s) 28
MlyI GAGTC 1 cut(s) 824
MnlI CCTC 4 cut(s) 72, 163, 741, 877
Mox20I TGGCCA 1 cut(s) 28
MscI TGGCCA 1 cut(s) 28
MseI TTAA 5 cut(s) 435, 575, 768, 968, 1066
MslI CAYNNNNRTG 1 cut(s) 492
Msp20I TGGCCA 1 cut(s) 28
MspI CCGG 2 cut(s) 366, 933
MspR9I CCNGG 1 cut(s) 278
MvaI CCWGG 1 cut(s) 278
MvnI CGCG 1 cut(s) 288
MwoI GCNNNNNNNGC 4 cut(s) 559, 653, 716, 881
NcoI CCATGG 1 cut(s) 182
NdeI CATATG 1 cut(s) 1018
NdeII GATC 5 cut(s) 289, 305, 649, 1022, 1036
NlaIII CATG 8 cut(s) 137, 186, 212, 274, 475, 656, 690, 702
NlaIV GGNNCC 2 cut(s) 370, 943
NmuCI GTSAC 1 cut(s) 855
NruI TCGCGA 1 cut(s) 288
OliI CACNNNNGTG 1 cut(s) 492
PfeI GAWTC 2 cut(s) 259, 331
Pfl23II CGTACG 1 cut(s) 587
PflFI GACNNNGTC 2 cut(s) 148, 814
PflMI CCANNNNNTGG 1 cut(s) 1000
PinAI ACCGGT 1 cut(s) 365
PkrI GCNGC 1 cut(s) 693
PleI GAGTC 1 cut(s) 823
PpsI GAGTC 1 cut(s) 823
Ppu21I YACGTR 1 cut(s) 587
Psp6I CCWGG 1 cut(s) 276
PspGI CCWGG 1 cut(s) 276
PspLI CGTACG 1 cut(s) 587
PspN4I GGNNCC 2 cut(s) 370, 943
PspPI GGNCC 4 cut(s) 274, 500, 850, 991
PsrI GAACNNNNNNTAC 2 cut(s) 893, 925
PsuI RGATCY 1 cut(s) 1022
PsyI GACNNNGTC 2 cut(s) 148, 814
RruI TCGCGA 1 cut(s) 288
RsaI GTAC 8 cut(s) 83, 370, 476, 523, 572, 589, 600, 743
RsaNI GTAC 8 cut(s) 82, 369, 475, 522, 571, 588, 599, 742
RseI CAYNNNNRTG 1 cut(s) 492
SalI GTCGAC 1 cut(s) 128
SaqAI TTAA 5 cut(s) 435, 575, 768, 968, 1066
SatI GCNGC 1 cut(s) 692
Sau3AI GATC 5 cut(s) 289, 305, 649, 1022, 1036
Sau96I GGNCC 4 cut(s) 274, 500, 850, 991
ScaI AGTACT 1 cut(s) 743
SchI GAGTC 1 cut(s) 824
ScrFI CCNGG 1 cut(s) 278
SfaNI GCATC 4 cut(s) 207, 520, 871, 1002
SfcI CTRYAG 2 cut(s) 10, 796
SinI GGWCC 2 cut(s) 850, 991
SmiMI CAYNNNNRTG 1 cut(s) 492
SnaBI TACGTA 1 cut(s) 587
SsiI CCGC 5 cut(s) 5, 179, 342, 647, 692
SspMI CTAG 1 cut(s) 302
StyD4I CCNGG 1 cut(s) 276
StyI CCWWGG 3 cut(s) 182, 193, 301
TaaI ACNGT 3 cut(s) 11, 479, 592
TaiI ACGT 2 cut(s) 149, 589
TaqI TCGA 4 cut(s) 129, 201, 611, 738
TatI WGTACW 3 cut(s) 474, 521, 741
TauI GCSGC 1 cut(s) 694
TfiI GAWTC 2 cut(s) 259, 331
Tru1I TTAA 5 cut(s) 435, 575, 768, 968, 1066
Tru9I TTAA 5 cut(s) 435, 575, 768, 968, 1066
TscAI CASTG 1 cut(s) 484
TseFI GTSAC 1 cut(s) 855
Tsp45I GTSAC 1 cut(s) 855
TspDTI ATGAA 3 cut(s) 221, 376, 1038
TspRI CASTG 1 cut(s) 484
Tth111I GACNNNGTC 2 cut(s) 148, 814
Van91I CCANNNNNTGG 1 cut(s) 1000
VpaK11BI GGWCC 2 cut(s) 850, 991
XapI RAATTY 3 cut(s) 239, 756, 928
XcmI CCANNNNNNNNNTGG 1 cut(s) 631
XmaJI CCTAGG 1 cut(s) 301
XmiI GTMKAC 1 cut(s) 129
XspI CTAG 1 cut(s) 302
ZraI GACGTC 1 cut(s) 147
ZrmI AGTACT 1 cut(s) 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.