Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004225

Physical Location & Seq

Genomic Coordinates Reverse (-)

7466468 .. 7470630

Gene Structure 4163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00286440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCGGACTGTAGAATACCAAATTGGCCAGAACTTCCCATTGACCATTTTGAATTGATTTTATCAAAATTATCCTTGAGGTACATACTGCGTTTGAAAGCAGTTTCTCGTTCCTTCTACAACGCTGTCGACTATGTGTTACAGACGTCGTCCTCATCATTCACTTGCTTAGCAGAACCGCCACGGCTCTACCTTGGCATCGATGGTCATGGCTTTCGTTTTCAAAGTCTTCATCAGGAATTCAAGTTTTACCACTTGAATCAGAACAACATGGCCCAGGAGTTTCGCGATCACGTTAGCCTAGGATCGTCCAGAGGCTGGCTGCTTCTTGGGATTAATTTCCCAACAGATTGCTTATATTATCGTGCAAGGTTTAGCACATTTAATGTATTGTCTTTGCAACCTTCTCTGGTTACAATCATGTACAGTGTCAAACGCTTTAATCCAGGGCCATACAGCATTGCATTTTGTACAACAGATGTAGATGGTAAGTGGACAAAGCTGGATGAGCGTGAATGGTACTTAAATAATTGTTGCCATCATGATCAACTCTATGCATTACGGCAAGACATCAATACGGTTGAAGTATGGGATTTCTCCACTTCCTTTCCCATTAAAAAGATGGAAATCCGAGCGGATCATGCGCTTGGGAAGTATATAAACTATCATCAAATATGGCCGCAACCATGCTGCATAGCCAAAACAGCAGAAGATCTAGTCCTCGTATCGTACAGATGGATAGAGACAGAGTCCATTGGCAAGGGTGAATTGTATTTGAATAGGGACCAGTCACTATTAACCTCAACAGCCGATGATGCTTCAGAATGCAATAGGAACTCAATTTACTTCACAAACTTTTTAAGAAAGAAAAAAGAAGAAAAGGTCCAAGATTTGGTATTTTGGTTGCCTCATGGATCTCTTTTGTTTGATCCTAATCTTTCATTCTTTCTTAGGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

319

Amino Acids

37.4

Weight (kDa)

6.79

Isoelectric Point (pI)

42.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	9 - 45	1.8e-06	F-box domain
Beta-prop_KIB1-4	PF03478	129 - 291	7.2e-08	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004225)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15921 FvH4_4g04632 FvH4_4g05202 FvH4_4g05500 FvH4_7g24700
prunus_persica	Prupe.1G052900_v2.0.a1 Prupe.1G053000_v2.0.a1
rosa_laevigata	RLG00000032962
rosa_multiflora	Rmu_sc0002021.1_g000018 Rmu_sc0004598.1_g000005 Rmu_sc0010817.1_g000006 Rmu_sc0021895.1_g000002 Rmu_sc0021895.1_g000003
rosa_roxburghii	Rroxscaffold_1G00052700 Rroxscaffold_4G00286440
rosa_rugosa	Rorug03G0352300 Rorug03G0357300
rosa_samantha	Rh1AG366800 Rh1BG330300 Rh1CG343200 Rh1CG344600 Rh1DG361800 Rh4AG059700 Rh4BG058300 Rh4CG064000 Rh4DG054900 Rh4DG061400 Rh4DG061600 Rh5BG185200 Rh5CG205200
rosa_wichuraiana	Rw1G032280 Rw4G004780 Rw5G017140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	149
AccB7I	CCANNNNNTGG	2 cut(s)	318, 892
AccBSI	CCGCTC	1 cut(s)	635
AccI	GTMKAC	1 cut(s)	129
AccII	CGCG	1 cut(s)	288
AciI	CCGC	4 cut(s)	5, 179, 635, 680
AclWI	GGATC	4 cut(s)	313, 645, 922, 923
AcoI	YGGCCR	2 cut(s)	26, 677
AcsI	RAATTY	1 cut(s)	239
AcuI	CTGAAG	1 cut(s)	804
AcyI	GRCGYC	1 cut(s)	146
AfaI	GTAC	5 cut(s)	83, 425, 472, 521, 731
AfiI	CCNNNNNNNGG	2 cut(s)	318, 892
AgsI	TTSAA	7 cut(s)	53, 97, 224, 244, 259, 584, 778
AjnI	CCWGG	2 cut(s)	276, 445
AjuI	GAANNNNNNNTTGG	2 cut(s)	7, 39
AluBI	AGCT	1 cut(s)	502
AluI	AGCT	1 cut(s)	502
Alw26I	GTCTC	1 cut(s)	737
AlwI	GGATC	4 cut(s)	313, 645, 922, 923
AlwNI	CAGNNNCTG	1 cut(s)	318
AoxI	GGCC	4 cut(s)	26, 273, 449, 677
ApeKI	GCWGC	2 cut(s)	322, 690
ApoI	RAATTY	1 cut(s)	239
AseI	ATTAAT	1 cut(s)	336
AspA2I	CCTAGG	1 cut(s)	301
AspLEI	GCGC	1 cut(s)	646
AspS9I	GGNCC	4 cut(s)	274, 449, 784, 883
AsuHPI	GGTGA	1 cut(s)	776
AvaII	GGWCC	2 cut(s)	784, 883
AvrII	CCTAGG	1 cut(s)	301
BalI	TGGCCA	1 cut(s)	28
BbsI	GAAGAC	1 cut(s)	221
BbvI	GCAGC	2 cut(s)	309, 677
BccI	CCATC	5 cut(s)	197, 479, 546, 616, 729
BceAI	ACGGC	2 cut(s)	200, 578
BciT130I	CCWGG	2 cut(s)	278, 447
BclI	TGATCA	1 cut(s)	544
BcoDI	GTCTC	1 cut(s)	737
BfaI	CTAG	2 cut(s)	302, 716
BfmI	CTRYAG	1 cut(s)	10
BglII	AGATCT	1 cut(s)	712
BisI	GCNGC	3 cut(s)	323, 680, 691
BlnI	CCTAGG	1 cut(s)	301
BlpI	GCTNAGC	1 cut(s)	169
BlsI	GCNGC	3 cut(s)	324, 681, 692
Bme1390I	CCNGG	2 cut(s)	278, 447
Bme18I	GGWCC	2 cut(s)	784, 883
BmgT120I	GGNCC	4 cut(s)	274, 449, 784, 883
BmiI	GGNNCC	1 cut(s)	785
BmrFI	CCNGG	2 cut(s)	278, 447
BmsI	GCATC	2 cut(s)	207, 805
BpiI	GAAGAC	1 cut(s)	221
Bpu1102I	GCTNAGC	1 cut(s)	169
BpuEI	CTTGAG	1 cut(s)	97
Bsa29I	ATCGAT	1 cut(s)	201
BsaBI	GATNNNNATC	2 cut(s)	626, 933
BsaHI	GRCGYC	1 cut(s)	146
BsaJI	CCNNGG	5 cut(s)	182, 193, 276, 301, 446
Bsc4I	CCNNNNNNNGG	2 cut(s)	318, 892
Bse1I	ACTGG	1 cut(s)	787
Bse3DI	GCAATG	1 cut(s)	459
Bse8I	GATNNNNATC	2 cut(s)	626, 933
BseBI	CCWGG	2 cut(s)	278, 447
BseCI	ATCGAT	1 cut(s)	201
BseDI	CCNNGG	5 cut(s)	182, 193, 276, 301, 446
BseGI	GGATG	1 cut(s)	511
BseJI	GATNNNNATC	2 cut(s)	626, 933
BseLI	CCNNNNNNNGG	2 cut(s)	318, 892
BseMI	GCAATG	1 cut(s)	459
BseNI	ACTGG	1 cut(s)	787
BseXI	GCAGC	2 cut(s)	309, 677
Bsh1236I	CGCG	1 cut(s)	288
BshFI	GGCC	4 cut(s)	28, 275, 451, 679
BshVI	ATCGAT	1 cut(s)	201
BslFI	GGGAC	1 cut(s)	797
BslI	CCNNNNNNNGG	2 cut(s)	318, 892
BsmAI	GTCTC	1 cut(s)	737
BsmFI	GGGAC	1 cut(s)	797
BsmI	GAATGC	1 cut(s)	830
BsnI	GGCC	4 cut(s)	28, 275, 451, 679
Bsp1407I	TGTACA	2 cut(s)	423, 470
Bsp143I	GATC	7 cut(s)	289, 305, 544, 637, 712, 914, 928
Bsp1720I	GCTNAGC	1 cut(s)	169
Bsp68I	TCGCGA	1 cut(s)	288
BspACI	CCGC	4 cut(s)	5, 179, 635, 680
BspANI	GGCC	4 cut(s)	28, 275, 451, 679
BspDI	ATCGAT	1 cut(s)	201
BspFNI	CGCG	1 cut(s)	288
BspHI	TCATGA	1 cut(s)	541
BspLI	GGNNCC	1 cut(s)	785
BspPI	GGATC	4 cut(s)	313, 645, 922, 923
BsrBI	CCGCTC	1 cut(s)	635
BsrDI	GCAATG	1 cut(s)	459
BsrGI	TGTACA	2 cut(s)	423, 470
BsrI	ACTGG	1 cut(s)	787
BssECI	CCNNGG	5 cut(s)	182, 193, 276, 301, 446
BssMI	GATC	7 cut(s)	289, 305, 544, 637, 712, 914, 928
BssNI	GRCGYC	1 cut(s)	146
BssT1I	CCWWGG	2 cut(s)	193, 301
Bst2UI	CCWGG	2 cut(s)	278, 447
Bst4CI	ACNGT	3 cut(s)	11, 428, 580
BstACI	GRCGYC	1 cut(s)	146
BstAUI	TGTACA	2 cut(s)	423, 470
BstC8I	GCNNGC	1 cut(s)	320
BstDEI	CTNAG	2 cut(s)	169, 950
BstDSI	CCRYGG	1 cut(s)	182
BstF5I	GGATG	1 cut(s)	511
BstFNI	CGCG	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	646
BstKTI	GATC	7 cut(s)	292, 308, 547, 640, 715, 917, 931
BstMAI	GTCTC	1 cut(s)	737
BstMBI	GATC	7 cut(s)	289, 305, 544, 637, 712, 914, 928
BstMWI	GCNNNNNNNGC	4 cut(s)	508, 641, 704, 815
BstNI	CCWGG	2 cut(s)	278, 447
BstSCI	CCNGG	2 cut(s)	276, 445
BstSFI	CTRYAG	1 cut(s)	10
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	2 cut(s)	309, 677
BstV2I	GAAGAC	1 cut(s)	221
BstX2I	RGATCY	2 cut(s)	712, 914
BstYI	RGATCY	2 cut(s)	712, 914
Bsu15I	ATCGAT	1 cut(s)	201
BsuRI	GGCC	4 cut(s)	28, 275, 451, 679
BsuTUI	ATCGAT	1 cut(s)	201
BtgI	CCRYGG	1 cut(s)	182
BtsCI	GGATG	1 cut(s)	511
BtsIMutI	CAGTG	1 cut(s)	433
BtuMI	TCGCGA	1 cut(s)	288
Cac8I	GCNNGC	1 cut(s)	320
CaiI	CAGNNNCTG	1 cut(s)	318
CciI	TCATGA	1 cut(s)	541
CfoI	GCGC	1 cut(s)	646
Cfr13I	GGNCC	4 cut(s)	274, 449, 784, 883
ClaI	ATCGAT	1 cut(s)	201
Csp6I	GTAC	5 cut(s)	82, 424, 471, 520, 730
CviAII	CATG	7 cut(s)	209, 271, 421, 542, 641, 687, 911
CviQI	GTAC	5 cut(s)	82, 424, 471, 520, 730
DdeI	CTNAG	2 cut(s)	169, 950
DpnI	GATC	7 cut(s)	291, 307, 546, 639, 714, 916, 930
DpnII	GATC	7 cut(s)	289, 305, 544, 637, 712, 914, 928
EaeI	YGGCCR	2 cut(s)	26, 677
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	193, 301
Eco47I	GGWCC	2 cut(s)	784, 883
Eco57I	CTGAAG	1 cut(s)	804
EcoRI	GAATTC	1 cut(s)	239
EcoRII	CCWGG	2 cut(s)	276, 445
EcoT14I	CCWWGG	2 cut(s)	193, 301
EcoT22I	ATGCAT	1 cut(s)	559
ErhI	CCWWGG	2 cut(s)	193, 301
FaeI	CATG	7 cut(s)	212, 274, 424, 545, 644, 690, 914
FaqI	GGGAC	1 cut(s)	797
FatI	CATG	7 cut(s)	208, 270, 420, 541, 640, 686, 910
FbaI	TGATCA	1 cut(s)	544
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	3 cut(s)	323, 680, 691
FokI	GGATG	1 cut(s)	518
Fsp4HI	GCNGC	3 cut(s)	323, 680, 691
FspBI	CTAG	2 cut(s)	302, 716
GlaI	GCGC	1 cut(s)	645
GluI	GCNGC	3 cut(s)	323, 680, 691
HaeIII	GGCC	4 cut(s)	28, 275, 451, 679
HhaI	GCGC	1 cut(s)	646
Hin1I	GRCGYC	1 cut(s)	146
Hin1II	CATG	7 cut(s)	212, 274, 424, 545, 644, 690, 914
Hin6I	GCGC	1 cut(s)	644
HinP1I	GCGC	1 cut(s)	644
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	2 cut(s)	259, 749
HphI	GGTGA	1 cut(s)	776
Hpy166II	GTNNAC	2 cut(s)	130, 495
Hpy188I	TCNGA	3 cut(s)	264, 632, 823
Hpy188III	TCNNGA	4 cut(s)	236, 287, 312, 542
Hpy8I	GTNNAC	2 cut(s)	130, 495
Hpy99I	CGWCG	1 cut(s)	151
HpyAV	CCTTC	2 cut(s)	124, 414
HpyCH4III	ACNGT	3 cut(s)	11, 428, 580
HpyCH4IV	ACGT	2 cut(s)	146, 294
HpyCH4V	TGCA	6 cut(s)	368, 400, 464, 557, 693, 828
HpyF10VI	GCNNNNNNNGC	4 cut(s)	508, 641, 704, 815
HpyF3I	CTNAG	2 cut(s)	169, 950
HpySE526I	ACGT	2 cut(s)	146, 294
Hsp92I	GRCGYC	1 cut(s)	146
Hsp92II	CATG	7 cut(s)	212, 274, 424, 545, 644, 690, 914
HspAI	GCGC	1 cut(s)	644
Ksp22I	TGATCA	1 cut(s)	544
Kzo9I	GATC	7 cut(s)	289, 305, 544, 637, 712, 914, 928
Lsp1109I	GCAGC	2 cut(s)	309, 677
LweI	GCATC	2 cut(s)	207, 805
MaeI	CTAG	2 cut(s)	302, 716
MaeII	ACGT	2 cut(s)	146, 294
MaeIII	GTNAC	3 cut(s)	138, 412, 789
MalI	GATC	7 cut(s)	291, 307, 546, 639, 714, 916, 930
MbiI	CCGCTC	1 cut(s)	635
MboI	GATC	7 cut(s)	289, 305, 544, 637, 712, 914, 928
MboII	GAAGA	3 cut(s)	221, 722, 887
MflI	RGATCY	2 cut(s)	712, 914
MlsI	TGGCCA	1 cut(s)	28
MluCI	AATT	8 cut(s)	22, 53, 68, 239, 337, 529, 767, 840
MluNI	TGGCCA	1 cut(s)	28
MlyI	GAGTC	1 cut(s)	758
MnlI	CCTC	6 cut(s)	72, 163, 308, 731, 811, 918
Mox20I	TGGCCA	1 cut(s)	28
Mph1103I	ATGCAT	1 cut(s)	559
MscI	TGGCCA	1 cut(s)	28
MseI	TTAA	8 cut(s)	336, 384, 441, 524, 615, 797, 860, 958
Msp20I	TGGCCA	1 cut(s)	28
MspR9I	CCNGG	2 cut(s)	278, 447
Mva1269I	GAATGC	1 cut(s)	830
MvaI	CCWGG	2 cut(s)	278, 447
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	4 cut(s)	508, 641, 704, 815
NdeII	GATC	7 cut(s)	289, 305, 544, 637, 712, 914, 928
NlaIII	CATG	7 cut(s)	212, 274, 424, 545, 644, 690, 914
NlaIV	GGNNCC	1 cut(s)	785
NmuCI	GTSAC	1 cut(s)	789
NruI	TCGCGA	1 cut(s)	288
NsiI	ATGCAT	1 cut(s)	559
PagI	TCATGA	1 cut(s)	541
PctI	GAATGC	1 cut(s)	830
PfeI	GAWTC	1 cut(s)	259
PflFI	GACNNNGTC	2 cut(s)	148, 748
PflMI	CCANNNNNTGG	2 cut(s)	318, 892
PkrI	GCNGC	3 cut(s)	324, 681, 692
PleI	GAGTC	1 cut(s)	757
PpsI	GAGTC	1 cut(s)	757
PshBI	ATTAAT	1 cut(s)	336
Psp6I	CCWGG	2 cut(s)	276, 445
PspGI	CCWGG	2 cut(s)	276, 445
PspN4I	GGNNCC	1 cut(s)	785
PspPI	GGNCC	4 cut(s)	274, 449, 784, 883
PsrI	GAACNNNNNNTAC	2 cut(s)	827, 859
PstNI	CAGNNNCTG	1 cut(s)	318
PsuI	RGATCY	2 cut(s)	712, 914
PsyI	GACNNNGTC	2 cut(s)	148, 748
RruI	TCGCGA	1 cut(s)	288
RsaI	GTAC	5 cut(s)	83, 425, 472, 521, 731
RsaNI	GTAC	5 cut(s)	82, 424, 471, 520, 730
SalI	GTCGAC	1 cut(s)	128
SaqAI	TTAA	8 cut(s)	336, 384, 441, 524, 615, 797, 860, 958
SatI	GCNGC	3 cut(s)	323, 680, 691
Sau3AI	GATC	7 cut(s)	289, 305, 544, 637, 712, 914, 928
Sau96I	GGNCC	4 cut(s)	274, 449, 784, 883
SchI	GAGTC	1 cut(s)	758
ScrFI	CCNGG	2 cut(s)	278, 447
SetI	ASST	9 cut(s)	83, 149, 195, 297, 374, 406, 504, 803, 885
SfaNI	GCATC	2 cut(s)	207, 805
SfcI	CTRYAG	1 cut(s)	10
SinI	GGWCC	2 cut(s)	784, 883
SmlI	CTYRAG	1 cut(s)	76
SmoI	CTYRAG	1 cut(s)	76
Sse9I	AATT	8 cut(s)	22, 53, 68, 239, 337, 529, 767, 840
SsiI	CCGC	4 cut(s)	5, 179, 635, 680
SspMI	CTAG	2 cut(s)	302, 716
StyD4I	CCNGG	2 cut(s)	276, 445
StyI	CCWWGG	2 cut(s)	193, 301
TaaI	ACNGT	3 cut(s)	11, 428, 580
TaiI	ACGT	2 cut(s)	149, 297
TaqI	TCGA	2 cut(s)	129, 201
TasI	AATT	8 cut(s)	22, 53, 68, 239, 337, 529, 767, 840
TatI	WGTACW	2 cut(s)	423, 470
TauI	GCSGC	1 cut(s)	682
TfiI	GAWTC	1 cut(s)	259
Tru1I	TTAA	8 cut(s)	336, 384, 441, 524, 615, 797, 860, 958
Tru9I	TTAA	8 cut(s)	336, 384, 441, 524, 615, 797, 860, 958
TscAI	CASTG	1 cut(s)	433
TseFI	GTSAC	1 cut(s)	789
TseI	GCWGC	2 cut(s)	322, 690
Tsp45I	GTSAC	1 cut(s)	789
TspDTI	ATGAA	2 cut(s)	221, 930
TspRI	CASTG	1 cut(s)	433
Tth111I	GACNNNGTC	2 cut(s)	148, 748
Van91I	CCANNNNNTGG	2 cut(s)	318, 892
VpaK11BI	GGWCC	2 cut(s)	784, 883
VspI	ATTAAT	1 cut(s)	336
XapI	RAATTY	1 cut(s)	239
XcmI	CCANNNNNNNNNTGG	1 cut(s)	619
XmaJI	CCTAGG	1 cut(s)	301
XmiI	GTMKAC	1 cut(s)	129
XspI	CTAG	2 cut(s)	302, 716
ZraI	GACGTC	1 cut(s)	147
Zsp2I	ATGCAT	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.