FvH4_3g15921

f-box protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
10029909 .. 10031466
1558 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g15921.t1

Sequence Viewer

Length: 1281 bp
ATGGGTGACGGCATCAGCTTCCGGCACACCACAAGAAAAACTAGAAAACCAAGTTGGCCTGTACTTCCTCTTGATGTGTATGAACTGATTTCATCAAAGTTAACCCTGAGCGATATACTGCGTTGGAAATCGGTTTCTCGTTCATGCTACAATGCCATCAAATATATCGTAGAGAAATCCCCATCATTCACCTGGTTAGCCGAACCTCCCTGCCTCCTGCTTTACCCAGATCAAGATTTGGACCGCACCATTGATGTTGATGATGGCATTATATACGATGAAGGGTTTGTCTTTTATAATCTTAACAGCGGCAAATTTTCCAAGTTGAAGAACACCATACCTAAGGAGTTAAGCCATGGTGTTTTTCTTGGATTGTCTCAAGGTTGGGTGCTTTTCTTGAGCAAGAAGCTAGAGTTTGTGCTCTTAAACCCCATGCTATGTGGAGCTCAGCTCCCACTCCCACCGCTCTGTAGTTTTCCAGATATACAAAGAATAACATACGATCTCGACCAACCTATAATCAAGTGGAGAAAACCTGCAGTTACTTTCACATCCTTGGAATTGTTTAGTGCAAGTTTCCAGTCCAAAGTTGTCGTGTGTCCGCGATGGAGTTGCAGCAGTAGGATCAGAAACAAAGACATCTTTGGGGTTATTGTTATGTACTATGTTCTGGTCAATAATCAGGAGACTACAGGACCATATAATCTTGCATTTTGTAACACTAATGCAGATGTTAAGTGGACAAAACTTGACAAGCAAGGAGGTTATAAGGACATTGTGTGGCATCAAAATCACTTGTATGCCTTACGCAACGATTGGAGTAGTGTCACAGTCTGGGGTTTCGAGAATTCGTTAGTTCCGATTAAGATGAATGATATTCAATCTGATGGGGAGGCAATGCGAAATCTGGATGATCAATATGTTAGGGTCAGTGCTTACATGATCAAAACGCCGGAAGATCTATTGCTGGTCTGGAGGACTTGGACTAGTATGTTCTTTGCTTTTAAGCTGGACTGTTCCTATGGTAGGCGCAGATGGATAGAGGTGGAATCGATTGGGAATTATGCATTGGTTTTGGATCGGAGACAGTCTATGTTAATCTCAGCCGGCCATGATGCTTCAAGATGCGATAAGAATTCAATTTTCTTGGTAGAACAGTTACAAACAACTGATTCCCGCAGCAACGACTTGGTTGCTTTTGATTTGAAGCGAAGGGAGAAAGGACTAGAGAATGGTTTGCCAGCAGTGTGGAAGGATGACTGGCCAGTTGTTTTGGGTTGA

Protein Analysis

427

Amino Acids

49.11

Weight (kDa)

8.24

Isoelectric Point (pI)

44.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 98 - 401 2.9e-29 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 297, 768
Acc36I ACCTGC 1 cut(s) 544
AccBSI CCGCTC 1 cut(s) 466
AccII CGCG 1 cut(s) 604
AciI CCGC 5 cut(s) 244, 309, 464, 602, 1177
AclWI GGATC 2 cut(s) 632, 1086
AcoI YGGCCR 2 cut(s) 1108, 1262
AcsI RAATTY 3 cut(s) 314, 847, 1135
AfaI GTAC 2 cut(s) 63, 662
AfiI CCNNNNNNNGG 1 cut(s) 1026
AgsI TTSAA 5 cut(s) 328, 881, 1122, 1140, 1207
AhlI ACTAGT 1 cut(s) 986
AjnI CCWGG 1 cut(s) 191
AjuI GAANNNNNNNTTGG 4 cut(s) 37, 69, 1052, 1084
AluBI AGCT 5 cut(s) 18, 409, 446, 451, 1009
AluI AGCT 5 cut(s) 18, 409, 446, 451, 1009
Alw21I GWGCWC 2 cut(s) 423, 448
Alw26I GTCTC 3 cut(s) 381, 680, 1078
AlwI GGATC 2 cut(s) 632, 1086
AoxI GGCC 3 cut(s) 56, 1108, 1262
ApeKI GCWGC 2 cut(s) 615, 1179
ApoI RAATTY 3 cut(s) 314, 847, 1135
AspLEI GCGC 1 cut(s) 1032
AspS9I GGNCC 2 cut(s) 241, 695
AsuHPI GGTGA 2 cut(s) 17, 181
AvaII GGWCC 2 cut(s) 241, 695
AxyI CCTNAGG 1 cut(s) 342
BalI TGGCCA 1 cut(s) 1264
BanII GRGCYC 1 cut(s) 448
Bbv12I GWGCWC 2 cut(s) 423, 448
BbvI GCAGC 2 cut(s) 627, 1191
BccI CCATC 6 cut(s) 164, 190, 257, 600, 881, 1029
BceAI ACGGC 1 cut(s) 25
BcgI CGANNNNNNTGC 4 cut(s) 594, 628, 1175, 1209
BciT130I CCWGG 1 cut(s) 193
BclI TGATCA 2 cut(s) 913, 942
BcoDI GTCTC 3 cut(s) 381, 680, 1078
BcuI ACTAGT 1 cut(s) 986
BfaI CTAG 4 cut(s) 42, 410, 987, 1226
BfmI CTRYAG 3 cut(s) 469, 537, 690
BfuAI ACCTGC 1 cut(s) 544
BglII AGATCT 1 cut(s) 958
BisI GCNGC 3 cut(s) 310, 616, 1180
BlpI GCTNAGC 1 cut(s) 447
BlsI GCNGC 3 cut(s) 311, 617, 1181
Bme1390I CCNGG 1 cut(s) 193
Bme18I GGWCC 2 cut(s) 241, 695
BmgT120I GGNCC 2 cut(s) 241, 695
BmrFI CCNGG 1 cut(s) 193
BmsI GCATC 4 cut(s) 21, 793, 1105, 1115
BplI GAGNNNNNCTC 2 cut(s) 435, 467
BpmI CTGGAG 1 cut(s) 994
Bpu10I CCTNAGC 1 cut(s) 107
Bpu1102I GCTNAGC 1 cut(s) 447
BpuEI CTTGAG 2 cut(s) 363, 418
Bsa29I ATCGAT 1 cut(s) 1052
BsaJI CCNNGG 2 cut(s) 355, 555
Bsc4I CCNNNNNNNGG 1 cut(s) 1026
Bse118I RCCGGY 1 cut(s) 1106
Bse1I ACTGG 3 cut(s) 580, 1265, 1265
Bse21I CCTNAGG 1 cut(s) 342
Bse3DI GCAATG 1 cut(s) 903
BseBI CCWGG 1 cut(s) 193
BseCI ATCGAT 1 cut(s) 1052
BseDI CCNNGG 2 cut(s) 355, 555
BseGI GGATG 3 cut(s) 551, 916, 1261
BseLI CCNNNNNNNGG 1 cut(s) 1026
BseMI GCAATG 1 cut(s) 903
BseMII CTCAG 3 cut(s) 98, 461, 1116
BseNI ACTGG 3 cut(s) 580, 1265, 1265
BseXI GCAGC 2 cut(s) 627, 1191
Bsh1236I CGCG 1 cut(s) 604
BshFI GGCC 3 cut(s) 58, 1110, 1264
BshVI ATCGAT 1 cut(s) 1052
BsiHKAI GWGCWC 2 cut(s) 423, 448
BsiSI CCGG 3 cut(s) 22, 953, 1107
BslI CCNNNNNNNGG 1 cut(s) 1026
BsmAI GTCTC 3 cut(s) 381, 680, 1078
BsnI GGCC 3 cut(s) 58, 1110, 1264
Bsp1286I GDGCHC 2 cut(s) 423, 448
Bsp143I GATC 7 cut(s) 229, 502, 624, 913, 942, 958, 1078
Bsp1720I GCTNAGC 1 cut(s) 447
Bsp19I CCATGG 1 cut(s) 355
BspACI CCGC 5 cut(s) 244, 309, 464, 602, 1177
BspANI GGCC 3 cut(s) 58, 1110, 1264
BspCNI CTCAG 3 cut(s) 99, 460, 1115
BspDI ATCGAT 1 cut(s) 1052
BspFNI CGCG 1 cut(s) 604
BspMAI CTGCAG 1 cut(s) 541
BspMI ACCTGC 1 cut(s) 544
BspPI GGATC 2 cut(s) 632, 1086
BsrBI CCGCTC 1 cut(s) 466
BsrDI GCAATG 1 cut(s) 903
BsrFI RCCGGY 1 cut(s) 1106
BsrI ACTGG 3 cut(s) 580, 1265, 1265
BssAI RCCGGY 1 cut(s) 1106
BssECI CCNNGG 2 cut(s) 355, 555
BssMI GATC 7 cut(s) 229, 502, 624, 913, 942, 958, 1078
BssT1I CCWWGG 2 cut(s) 355, 555
Bst2UI CCWGG 1 cut(s) 193
Bst4CI ACNGT 4 cut(s) 832, 1016, 1089, 1158
BstC8I GCNNGC 2 cut(s) 1108, 1242
BstDEI CTNAG 4 cut(s) 107, 342, 447, 1102
BstDSI CCRYGG 1 cut(s) 355
BstENI CCTNNNNNAGG 1 cut(s) 1024
BstF5I GGATG 3 cut(s) 551, 916, 1261
BstFNI CGCG 1 cut(s) 604
BstHHI GCGC 1 cut(s) 1032
BstKTI GATC 7 cut(s) 232, 505, 627, 916, 945, 961, 1081
BstMAI GTCTC 3 cut(s) 381, 680, 1078
BstMBI GATC 7 cut(s) 229, 502, 624, 913, 942, 958, 1078
BstNI CCWGG 1 cut(s) 193
BstSCI CCNGG 1 cut(s) 191
BstSFI CTRYAG 3 cut(s) 469, 537, 690
BstUI CGCG 1 cut(s) 604
BstV1I GCAGC 2 cut(s) 627, 1191
BstX2I RGATCY 1 cut(s) 958
BstXI CCANNNNNNTGG 1 cut(s) 1248
BstYI RGATCY 1 cut(s) 958
Bsu15I ATCGAT 1 cut(s) 1052
Bsu36I CCTNAGG 1 cut(s) 342
BsuRI GGCC 3 cut(s) 58, 1110, 1264
BsuTUI ATCGAT 1 cut(s) 1052
BtgI CCRYGG 1 cut(s) 355
BtgZI GCGATG 1 cut(s) 619
BtsCI GGATG 3 cut(s) 551, 916, 1261
BtsI GCAGTG 1 cut(s) 1251
BtsIMutI CAGTG 2 cut(s) 937, 1251
BveI ACCTGC 1 cut(s) 544
Cac8I GCNNGC 2 cut(s) 1108, 1242
CfoI GCGC 1 cut(s) 1032
Cfr10I RCCGGY 1 cut(s) 1106
Cfr13I GGNCC 2 cut(s) 241, 695
ClaI ATCGAT 1 cut(s) 1052
CsiI ACCWGGT 1 cut(s) 191
Csp6I GTAC 2 cut(s) 62, 661
CviAII CATG 5 cut(s) 144, 356, 433, 940, 1112
CviQI GTAC 2 cut(s) 62, 661
DdeI CTNAG 4 cut(s) 107, 342, 447, 1102
DpnI GATC 7 cut(s) 231, 504, 626, 915, 944, 960, 1080
DpnII GATC 7 cut(s) 229, 502, 624, 913, 942, 958, 1078
EaeI YGGCCR 2 cut(s) 1108, 1262
Ecl136II GAGCTC 1 cut(s) 446
Eco130I CCWWGG 2 cut(s) 355, 555
Eco24I GRGCYC 1 cut(s) 448
Eco47I GGWCC 2 cut(s) 241, 695
Eco53kI GAGCTC 1 cut(s) 446
Eco81I CCTNAGG 1 cut(s) 342
EcoICRI GAGCTC 1 cut(s) 446
EcoNI CCTNNNNNAGG 1 cut(s) 1024
EcoRI GAATTC 2 cut(s) 847, 1135
EcoRII CCWGG 1 cut(s) 191
EcoT14I CCWWGG 2 cut(s) 355, 555
EcoT22I ATGCAT 1 cut(s) 1069
EcoT38I GRGCYC 1 cut(s) 448
ErhI CCWWGG 2 cut(s) 355, 555
FaeI CATG 5 cut(s) 147, 359, 436, 943, 1115
FatI CATG 5 cut(s) 143, 355, 432, 939, 1111
FauI CCCGC 1 cut(s) 1184
FbaI TGATCA 2 cut(s) 913, 942
Fnu4HI GCNGC 3 cut(s) 310, 616, 1180
FokI GGATG 3 cut(s) 538, 923, 1268
FriOI GRGCYC 1 cut(s) 448
Fsp4HI GCNGC 3 cut(s) 310, 616, 1180
FspBI CTAG 4 cut(s) 42, 410, 987, 1226
GlaI GCGC 1 cut(s) 1031
GluI GCNGC 3 cut(s) 310, 616, 1180
GsuI CTGGAG 1 cut(s) 994
HaeIII GGCC 3 cut(s) 58, 1110, 1264
HapII CCGG 3 cut(s) 22, 953, 1107
HhaI GCGC 1 cut(s) 1032
Hin1II CATG 5 cut(s) 147, 359, 436, 943, 1115
Hin6I GCGC 1 cut(s) 1030
HinP1I GCGC 1 cut(s) 1030
HincII GTYRAC 1 cut(s) 102
HindII GTYRAC 1 cut(s) 102
HinfI GANTC 2 cut(s) 1049, 1172
HpaI GTTAAC 1 cut(s) 102
HpaII CCGG 3 cut(s) 22, 953, 1107
HphI GGTGA 2 cut(s) 17, 181
Hpy166II GTNNAC 2 cut(s) 102, 741
Hpy188I TCNGA 4 cut(s) 629, 861, 886, 1083
Hpy8I GTNNAC 2 cut(s) 102, 741
HpyAV CCTTC 3 cut(s) 275, 1206, 1246
HpyCH4III ACNGT 4 cut(s) 832, 1016, 1089, 1158
HpyCH4V TGCA 6 cut(s) 539, 572, 615, 710, 728, 1067
HpyF3I CTNAG 4 cut(s) 107, 342, 447, 1102
Hsp92II CATG 5 cut(s) 147, 359, 436, 943, 1115
HspAI GCGC 1 cut(s) 1030
KroI GCCGGC 1 cut(s) 1106
KroNI GCCGGC 1 cut(s) 1108
Ksp22I TGATCA 2 cut(s) 913, 942
KspAI GTTAAC 1 cut(s) 102
Kzo9I GATC 7 cut(s) 229, 502, 624, 913, 942, 958, 1078
LmnI GCTCC 2 cut(s) 443, 456
Lsp1109I GCAGC 2 cut(s) 627, 1191
LweI GCATC 4 cut(s) 21, 793, 1105, 1115
MabI ACCWGGT 1 cut(s) 191
MaeI CTAG 4 cut(s) 42, 410, 987, 1226
MaeIII GTNAC 5 cut(s) 5, 541, 716, 826, 1158
MalI GATC 7 cut(s) 231, 504, 626, 915, 944, 960, 1080
MbiI CCGCTC 1 cut(s) 466
MboI GATC 7 cut(s) 229, 502, 624, 913, 942, 958, 1078
MboII GAAGA 2 cut(s) 340, 968
MflI RGATCY 1 cut(s) 958
MhlI GDGCHC 2 cut(s) 423, 448
MlsI TGGCCA 1 cut(s) 1264
MluCI AATT 6 cut(s) 314, 560, 847, 1060, 1135, 1140
MluNI TGGCCA 1 cut(s) 1264
MmeI TCCRAC 1 cut(s) 104
MnlI CCTC 7 cut(s) 78, 216, 224, 755, 886, 969, 1036
Mox20I TGGCCA 1 cut(s) 1264
Mph1103I ATGCAT 1 cut(s) 1069
MroNI GCCGGC 1 cut(s) 1106
MscI TGGCCA 1 cut(s) 1264
MseI TTAA 8 cut(s) 101, 303, 350, 425, 735, 864, 1005, 1097
MslI CAYNNNNRTG 1 cut(s) 798
Msp20I TGGCCA 1 cut(s) 1264
MspA1I CMGCKG 1 cut(s) 309
MspI CCGG 3 cut(s) 22, 953, 1107
MspR9I CCNGG 1 cut(s) 193
MvaI CCWGG 1 cut(s) 193
MvnI CGCG 1 cut(s) 604
NaeI GCCGGC 1 cut(s) 1108
NcoI CCATGG 1 cut(s) 355
NdeII GATC 7 cut(s) 229, 502, 624, 913, 942, 958, 1078
NgoMIV GCCGGC 1 cut(s) 1106
NlaIII CATG 5 cut(s) 147, 359, 436, 943, 1115
NmuCI GTSAC 2 cut(s) 5, 826
NsiI ATGCAT 1 cut(s) 1069
PcsI WCGNNNNNNNCGW 1 cut(s) 857
PdiI GCCGGC 1 cut(s) 1108
PfeI GAWTC 2 cut(s) 1049, 1172
PkrI GCNGC 3 cut(s) 311, 617, 1181
PsiI TTATAA 2 cut(s) 297, 768
Psp124BI GAGCTC 1 cut(s) 448
Psp6I CCWGG 1 cut(s) 191
PspGI CCWGG 1 cut(s) 191
PspPI GGNCC 2 cut(s) 241, 695
PstI CTGCAG 1 cut(s) 541
PsuI RGATCY 1 cut(s) 958
RsaI GTAC 2 cut(s) 63, 662
RsaNI GTAC 2 cut(s) 62, 661
RseI CAYNNNNRTG 1 cut(s) 798
SacI GAGCTC 1 cut(s) 448
SaqAI TTAA 8 cut(s) 101, 303, 350, 425, 735, 864, 1005, 1097
SatI GCNGC 3 cut(s) 310, 616, 1180
Sau3AI GATC 7 cut(s) 229, 502, 624, 913, 942, 958, 1078
Sau96I GGNCC 2 cut(s) 241, 695
ScrFI CCNGG 1 cut(s) 193
SduI GDGCHC 2 cut(s) 423, 448
SexAI ACCWGGT 1 cut(s) 191
SfaNI GCATC 4 cut(s) 21, 793, 1105, 1115
SfcI CTRYAG 3 cut(s) 469, 537, 690
SinI GGWCC 2 cut(s) 241, 695
SmiMI CAYNNNNRTG 1 cut(s) 798
SmlI CTYRAG 2 cut(s) 378, 397
SmoI CTYRAG 2 cut(s) 378, 397
SpeI ACTAGT 1 cut(s) 986
Sse9I AATT 6 cut(s) 314, 560, 847, 1060, 1135, 1140
SsiI CCGC 5 cut(s) 244, 309, 464, 602, 1177
SspMI CTAG 4 cut(s) 42, 410, 987, 1226
SstI GAGCTC 1 cut(s) 448
StyD4I CCNGG 1 cut(s) 191
StyI CCWWGG 2 cut(s) 355, 555
TaaI ACNGT 4 cut(s) 832, 1016, 1089, 1158
TaqI TCGA 3 cut(s) 507, 843, 1052
TasI AATT 6 cut(s) 314, 560, 847, 1060, 1135, 1140
TatI WGTACW 2 cut(s) 61, 660
TauI GCSGC 1 cut(s) 312
TfiI GAWTC 2 cut(s) 1049, 1172
Tru1I TTAA 8 cut(s) 101, 303, 350, 425, 735, 864, 1005, 1097
Tru9I TTAA 8 cut(s) 101, 303, 350, 425, 735, 864, 1005, 1097
TscAI CASTG 2 cut(s) 937, 1251
TseFI GTSAC 2 cut(s) 5, 826
TseI GCWGC 2 cut(s) 615, 1179
Tsp45I GTSAC 2 cut(s) 5, 826
TspDTI ATGAA 5 cut(s) 81, 96, 132, 294, 884
TspRI CASTG 2 cut(s) 937, 1251
VpaK11BI GGWCC 2 cut(s) 241, 695
XagI CCTNNNNNAGG 1 cut(s) 1024
XapI RAATTY 3 cut(s) 314, 847, 1135
XcmI CCANNNNNNNNNTGG 1 cut(s) 189
XspI CTAG 4 cut(s) 42, 410, 987, 1226
Zsp2I ATGCAT 1 cut(s) 1069
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.