Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0004225

Physical Location & Seq

Genomic Coordinates Forward (+)

20788424 .. 20790319

Gene Structure 1896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG205200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGATCATGTACTGTATCGTCAATAATCCACGGCTTGCAGGAGAATACAATCTTGCATTCTGCAAGACTAATGGAGATCTTACATGGACAAAACTTGATGAGCACAGAGGAGGTTATACAGATATTATGTGGAATCATAATCAGTTGTATGCCTTACGCAGCAATCGTAGTACTGTTACAGTGTGGGATTTTACGAATTCCATATTTCCCATTTATAAGACTGATATTGAAGCTGATGCAGGTGCAATACAAAGAACTGTCCATCATGAATCATACCGAACTTACATAATCAAGACAGTGGAAGGTCTGCTCCTGGTTTGGAGGACTTGGAGGACTAACAGCCCTGATAGATTCCATGCGTTTAAGCTGGACTATTCTGATGGGAGCTGCAGATGGATAGAGGTCGAATCGATTGGGAATATTGCATTGATTTTGGATTCGAACGAATCTATATTAATCTCACCCCATAATGCTCCAGGATGGGATAAGAATTCCATCTACTTCGTGCGTAAGTTACCCAACAATGCACGCGGTTATGGCTTATATGTTTTTAGTTTGCACAAGAAAGGATCCAAAAAGGTTAAGAAAAAACTCCACACTAATTTGCCATATGGTGTTACAACCCCAGTTTTTTTGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

213

Amino Acids

24.58

Weight (kDa)

9.27

Isoelectric Point (pI)

28.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	9 - 182	1.3e-26	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004225)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15921 FvH4_4g04632 FvH4_4g05202 FvH4_4g05500 FvH4_7g24700
prunus_persica	Prupe.1G052900_v2.0.a1 Prupe.1G053000_v2.0.a1
rosa_laevigata	RLG00000032962
rosa_multiflora	Rmu_sc0002021.1_g000018 Rmu_sc0004598.1_g000005 Rmu_sc0010817.1_g000006 Rmu_sc0021895.1_g000002 Rmu_sc0021895.1_g000003
rosa_roxburghii	Rroxscaffold_1G00052700 Rroxscaffold_4G00286440
rosa_rugosa	Rorug03G0352300 Rorug03G0357300
rosa_samantha	Rh1AG366800 Rh1BG330300 Rh1CG343200 Rh1CG344600 Rh1DG361800 Rh4AG059700 Rh4BG058300 Rh4CG064000 Rh4DG054900 Rh4DG061400 Rh4DG061600 Rh5BG185200 Rh5CG205200
rosa_wichuraiana	Rw1G032280 Rw4G004780 Rw5G017140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	216
AarI	CACCTGC	1 cut(s)	230
Acc36I	ACCTGC	1 cut(s)	230
AccII	CGCG	1 cut(s)	531
AciI	CCGC	1 cut(s)	531
AclWI	GGATC	2 cut(s)	564, 577
AcsI	RAATTY	2 cut(s)	196, 490
AfaI	GTAC	2 cut(s)	11, 172
AgsI	TTSAA	1 cut(s)	230
AjnI	CCWGG	2 cut(s)	312, 475
AluBI	AGCT	3 cut(s)	233, 367, 387
AluI	AGCT	3 cut(s)	233, 367, 387
Alw21I	GWGCWC	1 cut(s)	105
AlwI	GGATC	2 cut(s)	564, 577
ApeKI	GCWGC	2 cut(s)	159, 387
ApoI	RAATTY	2 cut(s)	196, 490
AseI	ATTAAT	1 cut(s)	455
AsuHPI	GGTGA	1 cut(s)	453
AsuII	TTCGAA	1 cut(s)	440
BamHI	GGATCC	1 cut(s)	569
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	2 cut(s)	171, 374
BccI	CCATC	5 cut(s)	270, 374, 387, 474, 503
BceAI	ACGGC	1 cut(s)	47
BciT130I	CCWGG	2 cut(s)	314, 477
BclI	TGATCA	1 cut(s)	3
BfmI	CTRYAG	1 cut(s)	388
BfuAI	ACCTGC	1 cut(s)	230
BglII	AGATCT	1 cut(s)	76
BisI	GCNGC	2 cut(s)	160, 388
BlsI	GCNGC	2 cut(s)	161, 389
BmcAI	AGTACT	1 cut(s)	172
Bme1390I	CCNGG	2 cut(s)	314, 477
BmiI	GGNNCC	1 cut(s)	571
BmrFI	CCNGG	2 cut(s)	314, 477
BmrI	ACTGGG	1 cut(s)	620
BmsI	GCATC	1 cut(s)	226
BmuI	ACTGGG	1 cut(s)	620
BpmI	CTGGAG	1 cut(s)	459
Bpu14I	TTCGAA	1 cut(s)	440
Bsa29I	ATCGAT	1 cut(s)	410
BsaJI	CCNNGG	1 cut(s)	29
Bse1I	ACTGG	1 cut(s)	626
BseBI	CCWGG	2 cut(s)	314, 477
BseCI	ATCGAT	1 cut(s)	410
BseDI	CCNNGG	1 cut(s)	29
BseGI	GGATG	1 cut(s)	485
BseNI	ACTGG	1 cut(s)	626
BseRI	GAGGAG	1 cut(s)	123
BseXI	GCAGC	2 cut(s)	171, 374
Bsh1236I	CGCG	1 cut(s)	531
BshVI	ATCGAT	1 cut(s)	410
BsiHKAI	GWGCWC	1 cut(s)	105
BsmI	GAATGC	1 cut(s)	56
Bsp119I	TTCGAA	1 cut(s)	440
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	3 cut(s)	3, 76, 569
BspACI	CCGC	1 cut(s)	531
BspDI	ATCGAT	1 cut(s)	410
BspFNI	CGCG	1 cut(s)	531
BspHI	TCATGA	1 cut(s)	265
BspLI	GGNNCC	1 cut(s)	571
BspMAI	CTGCAG	1 cut(s)	392
BspMI	ACCTGC	1 cut(s)	230
BspPI	GGATC	2 cut(s)	564, 577
BspT104I	TTCGAA	1 cut(s)	440
BsrI	ACTGG	1 cut(s)	626
BssECI	CCNNGG	1 cut(s)	29
BssMI	GATC	3 cut(s)	3, 76, 569
Bst2UI	CCWGG	2 cut(s)	314, 477
Bst4CI	ACNGT	5 cut(s)	14, 175, 181, 259, 298
BstBI	TTCGAA	1 cut(s)	440
BstC8I	GCNNGC	2 cut(s)	36, 529
BstDSI	CCRYGG	1 cut(s)	29
BstF5I	GGATG	1 cut(s)	485
BstFNI	CGCG	1 cut(s)	531
BstKTI	GATC	3 cut(s)	6, 79, 572
BstMBI	GATC	3 cut(s)	3, 76, 569
BstMWI	GCNNNNNNNGC	1 cut(s)	537
BstNI	CCWGG	2 cut(s)	314, 477
BstSCI	CCNGG	2 cut(s)	312, 475
BstSFI	CTRYAG	1 cut(s)	388
BstUI	CGCG	1 cut(s)	531
BstV1I	GCAGC	2 cut(s)	171, 374
BstX2I	RGATCY	2 cut(s)	76, 569
BstYI	RGATCY	2 cut(s)	76, 569
Bsu15I	ATCGAT	1 cut(s)	410
BsuTUI	ATCGAT	1 cut(s)	410
BtgI	CCRYGG	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	485
BtsIMutI	CAGTG	2 cut(s)	186, 303
BveI	ACCTGC	1 cut(s)	230
Cac8I	GCNNGC	2 cut(s)	36, 529
CciI	TCATGA	1 cut(s)	265
ClaI	ATCGAT	1 cut(s)	410
Csp6I	GTAC	2 cut(s)	10, 171
CviAII	CATG	4 cut(s)	7, 84, 266, 356
CviJI	RGCY	6 cut(s)	34, 233, 342, 367, 387, 540
CviKI_1	RGCY	6 cut(s)	34, 233, 342, 367, 387, 540
CviQI	GTAC	2 cut(s)	10, 171
DpnI	GATC	3 cut(s)	5, 78, 571
DpnII	GATC	3 cut(s)	3, 76, 569
EcoRI	GAATTC	2 cut(s)	196, 490
EcoRII	CCWGG	2 cut(s)	312, 475
FaeI	CATG	4 cut(s)	10, 87, 269, 359
FatI	CATG	4 cut(s)	6, 83, 265, 355
FauNDI	CATATG	1 cut(s)	610
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	2 cut(s)	160, 388
FokI	GGATG	1 cut(s)	492
Fsp4HI	GCNGC	2 cut(s)	160, 388
GluI	GCNGC	2 cut(s)	160, 388
GsuI	CTGGAG	1 cut(s)	459
Hin1II	CATG	4 cut(s)	10, 87, 269, 359
HinfI	GANTC	6 cut(s)	133, 269, 351, 407, 437, 446
HphI	GGTGA	1 cut(s)	453
Hpy188I	TCNGA	1 cut(s)	379
Hpy188III	TCNNGA	2 cut(s)	266, 292
HpyAV	CCTTC	1 cut(s)	296
HpyCH4III	ACNGT	5 cut(s)	14, 175, 181, 259, 298
HpyCH4V	TGCA	9 cut(s)	38, 56, 63, 239, 245, 390, 425, 527, 559
HpyF10VI	GCNNNNNNNGC	1 cut(s)	537
Hsp92II	CATG	4 cut(s)	10, 87, 269, 359
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 76, 569
LmnI	GCTCC	3 cut(s)	315, 384, 478
LpnPI	CCDG	8 cut(s)	24, 225, 299, 326, 353, 357, 462, 489
Lsp1109I	GCAGC	2 cut(s)	171, 374
LweI	GCATC	1 cut(s)	226
MaeIII	GTNAC	3 cut(s)	175, 513, 616
MalI	GATC	3 cut(s)	5, 78, 571
MboI	GATC	3 cut(s)	3, 76, 569
MflI	RGATCY	2 cut(s)	76, 569
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	3 cut(s)	196, 490, 601
MnlI	CCTC	5 cut(s)	101, 104, 315, 324, 394
MseI	TTAA	3 cut(s)	363, 455, 582
MspR9I	CCNGG	2 cut(s)	314, 477
Mva1269I	GAATGC	1 cut(s)	56
MvaI	CCWGG	2 cut(s)	314, 477
MvnI	CGCG	1 cut(s)	531
MwoI	GCNNNNNNNGC	1 cut(s)	537
NdeI	CATATG	1 cut(s)	610
NdeII	GATC	3 cut(s)	3, 76, 569
NlaIII	CATG	4 cut(s)	10, 87, 269, 359
NlaIV	GGNNCC	1 cut(s)	571
NspV	TTCGAA	1 cut(s)	440
PagI	TCATGA	1 cut(s)	265
PaqCI	CACCTGC	1 cut(s)	230
PcsI	WCGNNNNNNNCGW	1 cut(s)	163
PctI	GAATGC	1 cut(s)	56
PfeI	GAWTC	6 cut(s)	133, 269, 351, 407, 437, 446
PfoI	TCCNGGA	1 cut(s)	475
PkrI	GCNGC	2 cut(s)	161, 389
PshBI	ATTAAT	1 cut(s)	455
PsiI	TTATAA	1 cut(s)	216
Psp6I	CCWGG	2 cut(s)	312, 475
PspGI	CCWGG	2 cut(s)	312, 475
PspN4I	GGNNCC	1 cut(s)	571
PstI	CTGCAG	1 cut(s)	392
PsuI	RGATCY	2 cut(s)	76, 569
RsaI	GTAC	2 cut(s)	11, 172
RsaNI	GTAC	2 cut(s)	10, 171
SaqAI	TTAA	3 cut(s)	363, 455, 582
SatI	GCNGC	2 cut(s)	160, 388
Sau3AI	GATC	3 cut(s)	3, 76, 569
ScaI	AGTACT	1 cut(s)	172
ScrFI	CCNGG	2 cut(s)	314, 477
SduI	GDGCHC	1 cut(s)	105
SetI	ASST	8 cut(s)	115, 235, 244, 307, 369, 389, 405, 582
SfaNI	GCATC	1 cut(s)	226
SfcI	CTRYAG	1 cut(s)	388
SfuI	TTCGAA	1 cut(s)	440
Sse9I	AATT	3 cut(s)	196, 490, 601
SsiI	CCGC	1 cut(s)	531
SspI	AATATT	1 cut(s)	421
StyD4I	CCNGG	2 cut(s)	312, 475
TaaI	ACNGT	5 cut(s)	14, 175, 181, 259, 298
TaqI	TCGA	3 cut(s)	405, 410, 440
TasI	AATT	3 cut(s)	196, 490, 601
TatI	WGTACW	2 cut(s)	9, 170
TfiI	GAWTC	6 cut(s)	133, 269, 351, 407, 437, 446
Tru1I	TTAA	3 cut(s)	363, 455, 582
Tru9I	TTAA	3 cut(s)	363, 455, 582
TscAI	CASTG	2 cut(s)	186, 303
TseI	GCWGC	2 cut(s)	159, 387
TspDTI	ATGAA	1 cut(s)	282
TspRI	CASTG	2 cut(s)	186, 303
VspI	ATTAAT	1 cut(s)	455
XapI	RAATTY	2 cut(s)	196, 490
ZrmI	AGTACT	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.