FvH4_7g24700

f-box protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
19042360 .. 19045276
2917 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g24700.t1

Sequence Viewer

Length: 1968 bp
ATGGCGGACGAAACAACCTTTCAGCCGTTGCAGAATTGGTCCGAACTTCCGATCGACGTTTTAGAACTGATTTTATCAAAATTGTCAGTGAGGTACATACTACGTTTACAAGCAGTTTCTCGTTCCTTCTATAATGCTGTCAAATATGTGTTACAGTCGTCATCGTCGTCATTCACTTGCTTAGCTGAACCTCCCTGGATCTACCCTGGTGTCGATCGTCATCGTGGGTTTCGTTTTCAAAGTCTTGATCAGGACCGCAAGATCGACCACTTGAATCAGAATAAGATGGCCCGGAAGTTTCGTGATCACATTTGCGTTGGATCGTCCCAATCTTGGCTGCTTCTTTTGGGCAAAACCCTAGATCTCACACTCTTGAATCCTATATTCGCAGTTCAATTTCCTCTGCCTCCCTGCTCTACTATTCCATGTTTCAGGCGGTTTGATCAGAGGTCAATTTTCTATAATGCTAATGAATTTAGCACAGTTAGTGTATGGCTTTCGCAACTTTATCCGGTTAGGGTTTCGATCATGTATGGTGAAGGACCATACCACATTGCGTATTGTACAACAGATGCAGATGGTGAGTGGACAAATTTGTTGGATAAATATACCTGGAAAGGACTATACATGAACAGTTGTCGCTATCTTGACCAACTCTATGCATTACGGGAAGACATGACGGTTGAAGTATGGGATTTCTCGACTTCCCTTCCGGTAAAGAGGATGGAAATCCGAGCTGATCATGCGCCTGTGGTTCCAAAAAGAAGAAACCGTGCTGTGGAAACAGTCTACATAGCGAAAACAGTAGAAGATCTGCTGATCGTTACCAAATGGGGAAACGTTTGTGTTTATAAGCTGGATTACAATTCTGATGGTAGCTACAGATGGGTAGAGACCGAGTCCATTGGCAATAGTGAATTGGTTTTGAAAGGATACGAGTCACTTTTAACCTCAAAAGCTGATGATGCTACAGAAGGCAGTAGTAACTCAGTTTACTTCACCTCTGGAGGAAGCCGTAGATTATTTGCGTATAGTCTTAGAGAGAAAAGAGCAGAACCGCTGAACCTCCCTGGATCTACCTTGGTGTCGATCGTCATCGTGGGTTTCGTTTTCAAAGTCTTGATCAGTGAGCGGCTCTACCTTGGTGTCGATCTTCGTGGGTTTCGTTTTCAAAGTCTTCATCAGGACCGCAAGATCTACCACTTGAATCAGAATAGGATGGCCTGGAAGTTTCGCGATCACTTCAATTTCCTCTGCCTCCCTGCTCTACTATTCCATGTTTCATTCCGTTTGATCAGAGGTCAATTTTATATAATGCTAATAAATTTAGCAGTTAATGAATGGCTTTCGCAACTTTATCCGGTTAGGGTTTCGATCATGTATGGTGAAGGACCATACCACATTGCGTATTGTACAACAGAAGCAGATGGTGAGTGGACAAATTTGTTGGATAAATATACCTGGAAAGGACTATACATGAACAGTTGTCGTTATCTTGACCAACTCTATGCATTACGGGAAGACATGACGGTAGTATGGGATTTCTCGACTTCCCTTCCAATAAAGAGGATGGAAATCCGAGCTGATCATGCGCCTGTGGTTCACCGTGCTGTGGAAACAGTCTACATAGCCAGAATAGAAGAAGATCTGCTGATCGTTAACAGAGGGAGAAAGATTTGTGTTTATAAGCTGAATTACAATTCTGATGCAGGTAGCTACAGATGGGTAGAGATCGAGTCCATTGGCAATAGTGAATTGATTTTGAATGAAAACGAGTCACTTTTAACCTCAAAAGCCGATGATGCTTCAGAAGGCATTAGTAACTCAATTTACTTCACCAACTATGGAAGCAGCAGTTTATTTGCTTATAGTTTAAGAGAGAAAAGAGCTGAACAGCTAAAAGATTTGGCAGTTCCCCTATCTCCATTTGCTAGACTCTTTGATCCTAATCCTTCATTCTTTTATTAG

Protein Analysis

656

Amino Acids

75.93

Weight (kDa)

7.16

Isoelectric Point (pI)

44.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 13 - 49 2.1e-08 F-box domain
Beta-prop_KIB1-4 PF03478 90 - 344 5.9e-26 KIB1-4 beta-propeller
Beta-prop_KIB1-4 PF03478 459 - 623 2e-15 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 852, 1686
Acc36I ACCTGC 1 cut(s) 1700
AccBSI CCGCTC 1 cut(s) 1132
AccI GTMKAC 2 cut(s) 789, 1623
AccII CGCG 1 cut(s) 1236
AciI CCGC 6 cut(s) 5, 256, 436, 1058, 1132, 1189
AclI AACGTT 1 cut(s) 840
AclWI GGATC 4 cut(s) 206, 328, 1081, 1937
AcsI RAATTY 4 cut(s) 473, 592, 1324, 1441
AcuI CTGAAG 1 cut(s) 1791
AfaI GTAC 3 cut(s) 95, 565, 1414
AfiI CCNNNNNNNGG 3 cut(s) 333, 778, 1612
AjnI CCWGG 6 cut(s) 194, 205, 611, 1069, 1223, 1460
Alw26I GTCTC 1 cut(s) 887
AlwI GGATC 4 cut(s) 206, 328, 1081, 1937
AoxI GGCC 2 cut(s) 288, 1221
ApeKI GCWGC 2 cut(s) 337, 1851
ApoI RAATTY 4 cut(s) 473, 592, 1324, 1441
AspLEI GCGC 2 cut(s) 748, 1594
AspS9I GGNCC 6 cut(s) 39, 253, 289, 542, 1186, 1391
AsuC2I CCSGG 1 cut(s) 292
AsuHPI GGTGA 7 cut(s) 548, 593, 991, 1397, 1442, 1595, 1828
AvaII GGWCC 5 cut(s) 39, 253, 542, 1186, 1391
BbsI GAAGAC 3 cut(s) 678, 1169, 1527
BbvI GCAGC 2 cut(s) 324, 1863
BccI CCATC 9 cut(s) 280, 572, 718, 866, 879, 1213, 1421, 1564, 1716
BceAI ACGGC 2 cut(s) 10, 999
BciT130I CCWGG 6 cut(s) 196, 207, 613, 1071, 1225, 1462
BciVI GTATCC 1 cut(s) 926
BclI TGATCA 7 cut(s) 247, 304, 442, 739, 1122, 1293, 1585
BcnI CCSGG 1 cut(s) 292
BcoDI GTCTC 1 cut(s) 887
BfaI CTAG 2 cut(s) 359, 1932
BfmI CTRYAG 3 cut(s) 880, 969, 1717
BfuAI ACCTGC 1 cut(s) 1700
BfuI GTATCC 1 cut(s) 926
BglII AGATCT 4 cut(s) 361, 811, 1194, 1645
BisI GCNGC 3 cut(s) 338, 1133, 1852
BlpI GCTNAGC 1 cut(s) 181
BlsI GCNGC 3 cut(s) 339, 1134, 1853
Bme1390I CCNGG 7 cut(s) 196, 207, 292, 613, 1071, 1225, 1462
Bme18I GGWCC 5 cut(s) 39, 253, 542, 1186, 1391
BmgT120I GGNCC 6 cut(s) 39, 253, 289, 542, 1186, 1391
BmiI GGNNCC 1 cut(s) 756
BmrFI CCNGG 7 cut(s) 196, 207, 292, 613, 1071, 1225, 1462
BmsI GCATC 4 cut(s) 562, 955, 1696, 1792
BpiI GAAGAC 3 cut(s) 678, 1169, 1527
BpmI CTGGAG 1 cut(s) 1026
Bpu1102I GCTNAGC 1 cut(s) 181
BpuMI CCSGG 1 cut(s) 292
BsaBI GATNNNNATC 5 cut(s) 219, 728, 1094, 1574, 1947
BsaI GGTCTC 1 cut(s) 887
BsaJI CCNNGG 5 cut(s) 194, 205, 1069, 1080, 1141
BsaWI WCCGGW 3 cut(s) 511, 712, 1360
Bsc4I CCNNNNNNNGG 3 cut(s) 333, 778, 1612
Bse3DI GCAATG 2 cut(s) 552, 1401
Bse8I GATNNNNATC 5 cut(s) 219, 728, 1094, 1574, 1947
BseBI CCWGG 6 cut(s) 196, 207, 613, 1071, 1225, 1462
BseDI CCNNGG 5 cut(s) 194, 205, 1069, 1080, 1141
BseGI GGATG 3 cut(s) 729, 1224, 1575
BseJI GATNNNNATC 5 cut(s) 219, 728, 1094, 1574, 1947
BseLI CCNNNNNNNGG 3 cut(s) 333, 778, 1612
BseMI GCAATG 2 cut(s) 552, 1401
BseMII CTCAG 1 cut(s) 1002
BseXI GCAGC 2 cut(s) 324, 1863
Bsh1236I CGCG 1 cut(s) 1236
Bsh1285I CGRYCG 3 cut(s) 54, 217, 1092
BshFI GGCC 2 cut(s) 290, 1223
BsiEI CGRYCG 3 cut(s) 54, 217, 1092
BsiSI CCGG 4 cut(s) 292, 512, 713, 1361
BslFI GGGAC 1 cut(s) 310
BslI CCNNNNNNNGG 3 cut(s) 333, 778, 1612
BsmAI GTCTC 1 cut(s) 887
BsmFI GGGAC 1 cut(s) 310
BsnI GGCC 2 cut(s) 290, 1223
Bso31I GGTCTC 1 cut(s) 887
Bsp1407I TGTACA 2 cut(s) 563, 1412
Bsp1720I GCTNAGC 1 cut(s) 181
Bsp68I TCGCGA 1 cut(s) 1236
BspACI CCGC 6 cut(s) 5, 256, 436, 1058, 1132, 1189
BspANI GGCC 2 cut(s) 290, 1223
BspCNI CTCAG 1 cut(s) 1001
BspFNI CGCG 1 cut(s) 1236
BspLI GGNNCC 1 cut(s) 756
BspMI ACCTGC 1 cut(s) 1700
BspPI GGATC 4 cut(s) 206, 328, 1081, 1937
BspTNI GGTCTC 1 cut(s) 887
BsrBI CCGCTC 1 cut(s) 1132
BsrDI GCAATG 2 cut(s) 552, 1401
BsrGI TGTACA 2 cut(s) 563, 1412
BssECI CCNNGG 5 cut(s) 194, 205, 1069, 1080, 1141
BssT1I CCWWGG 2 cut(s) 1080, 1141
Bst2UI CCWGG 6 cut(s) 196, 207, 613, 1071, 1225, 1462
BstAUI TGTACA 2 cut(s) 563, 1412
BstDEI CTNAG 3 cut(s) 181, 988, 1037
BstF5I GGATG 3 cut(s) 729, 1224, 1575
BstFNI CGCG 1 cut(s) 1236
BstHHI GCGC 2 cut(s) 748, 1594
BstMAI GTCTC 1 cut(s) 887
BstMCI CGRYCG 3 cut(s) 54, 217, 1092
BstMWI GCNNNNNNNGC 4 cut(s) 743, 965, 1589, 1802
BstNI CCWGG 6 cut(s) 196, 207, 613, 1071, 1225, 1462
BstSCI CCNGG 7 cut(s) 194, 205, 290, 611, 1069, 1223, 1460
BstSFI CTRYAG 3 cut(s) 880, 969, 1717
BstUI CGCG 1 cut(s) 1236
BstV1I GCAGC 2 cut(s) 324, 1863
BstV2I GAAGAC 3 cut(s) 678, 1169, 1527
BstX2I RGATCY 6 cut(s) 198, 361, 811, 1073, 1194, 1645
BstYI RGATCY 6 cut(s) 198, 361, 811, 1073, 1194, 1645
BsuI GTATCC 1 cut(s) 926
BsuRI GGCC 2 cut(s) 290, 1223
BtsCI GGATG 3 cut(s) 729, 1224, 1575
BtsIMutI CAGTG 2 cut(s) 93, 1132
BtuMI TCGCGA 1 cut(s) 1236
BveI ACCTGC 1 cut(s) 1700
CfoI GCGC 2 cut(s) 748, 1594
Cfr13I GGNCC 6 cut(s) 39, 253, 289, 542, 1186, 1391
Csp6I GTAC 3 cut(s) 94, 564, 1413
CviQI GTAC 3 cut(s) 94, 564, 1413
DdeI CTNAG 3 cut(s) 181, 988, 1037
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 1080, 1141
Eco31I GGTCTC 1 cut(s) 887
Eco47I GGWCC 5 cut(s) 39, 253, 542, 1186, 1391
Eco57I CTGAAG 1 cut(s) 1791
EcoRII CCWGG 6 cut(s) 194, 205, 611, 1069, 1223, 1460
EcoT14I CCWWGG 2 cut(s) 1080, 1141
EcoT22I ATGCAT 2 cut(s) 664, 1513
ErhI CCWWGG 2 cut(s) 1080, 1141
FaqI GGGAC 1 cut(s) 310
FbaI TGATCA 7 cut(s) 247, 304, 442, 739, 1122, 1293, 1585
FblI GTMKAC 2 cut(s) 789, 1623
Fnu4HI GCNGC 3 cut(s) 338, 1133, 1852
FokI GGATG 3 cut(s) 736, 1231, 1582
Fsp4HI GCNGC 3 cut(s) 338, 1133, 1852
FspBI CTAG 2 cut(s) 359, 1932
GlaI GCGC 2 cut(s) 747, 1593
GluI GCNGC 3 cut(s) 338, 1133, 1852
GsuI CTGGAG 1 cut(s) 1026
HaeIII GGCC 2 cut(s) 290, 1223
HapII CCGG 4 cut(s) 292, 512, 713, 1361
HhaI GCGC 2 cut(s) 748, 1594
Hin6I GCGC 2 cut(s) 746, 1592
HinP1I GCGC 2 cut(s) 746, 1592
HincII GTYRAC 1 cut(s) 1660
HindII GTYRAC 1 cut(s) 1660
HinfI GANTC 8 cut(s) 274, 376, 899, 938, 1207, 1736, 1775, 1935
HpaI GTTAAC 1 cut(s) 1660
HpaII CCGG 4 cut(s) 292, 512, 713, 1361
HphI GGTGA 7 cut(s) 548, 593, 991, 1397, 1442, 1595, 1828
Hpy166II GTNNAC 8 cut(s) 107, 588, 790, 994, 1437, 1603, 1624, 1660
Hpy8I GTNNAC 8 cut(s) 107, 588, 790, 994, 1437, 1603, 1624, 1660
Hpy99I CGWCG 2 cut(s) 59, 169
HpyAV CCTTC 8 cut(s) 136, 533, 719, 968, 1382, 1565, 1805, 1962
HpyCH4IV ACGT 3 cut(s) 57, 103, 840
HpyCH4V TGCA 5 cut(s) 31, 575, 662, 1511, 1709
HpyF10VI GCNNNNNNNGC 4 cut(s) 743, 965, 1589, 1802
HpyF3I CTNAG 3 cut(s) 181, 988, 1037
HpySE526I ACGT 3 cut(s) 57, 103, 840
HspAI GCGC 2 cut(s) 746, 1592
Ksp22I TGATCA 7 cut(s) 247, 304, 442, 739, 1122, 1293, 1585
KspAI GTTAAC 1 cut(s) 1660
Lsp1109I GCAGC 2 cut(s) 324, 1863
LweI GCATC 4 cut(s) 562, 955, 1696, 1792
MaeI CTAG 2 cut(s) 359, 1932
MaeII ACGT 3 cut(s) 57, 103, 840
MaeIII GTNAC 6 cut(s) 150, 823, 939, 983, 1776, 1820
MbiI CCGCTC 1 cut(s) 1132
MboII GAAGA 8 cut(s) 683, 777, 821, 1145, 1169, 1532, 1652, 1655
MflI RGATCY 6 cut(s) 198, 361, 811, 1073, 1194, 1645
MlyI GAGTC 5 cut(s) 908, 947, 1745, 1784, 1929
MmeI TCCRAC 3 cut(s) 298, 579, 1428
Mph1103I ATGCAT 2 cut(s) 664, 1513
MseI TTAA 5 cut(s) 947, 1335, 1659, 1784, 1874
MspA1I CMGCKG 1 cut(s) 1060
MspI CCGG 4 cut(s) 292, 512, 713, 1361
MspR9I CCNGG 7 cut(s) 196, 207, 292, 613, 1071, 1225, 1462
MvaI CCWGG 6 cut(s) 196, 207, 613, 1071, 1225, 1462
MvnI CGCG 1 cut(s) 1236
MwoI GCNNNNNNNGC 4 cut(s) 743, 965, 1589, 1802
NciI CCSGG 1 cut(s) 292
NlaIV GGNNCC 1 cut(s) 756
NmuCI GTSAC 2 cut(s) 939, 1776
NruI TCGCGA 1 cut(s) 1236
NsiI ATGCAT 2 cut(s) 664, 1513
PcsI WCGNNNNNNNCGW 4 cut(s) 164, 229, 1104, 1162
PfeI GAWTC 3 cut(s) 274, 376, 1207
PflFI GACNNNGTC 1 cut(s) 898
PkrI GCNGC 3 cut(s) 339, 1134, 1853
Ple19I CGATCG 3 cut(s) 54, 217, 1092
PleI GAGTC 5 cut(s) 907, 946, 1744, 1783, 1929
PpsI GAGTC 5 cut(s) 907, 946, 1744, 1783, 1929
PsiI TTATAA 2 cut(s) 852, 1686
Psp1406I AACGTT 1 cut(s) 840
Psp6I CCWGG 6 cut(s) 194, 205, 611, 1069, 1223, 1460
PspGI CCWGG 6 cut(s) 194, 205, 611, 1069, 1223, 1460
PspN4I GGNNCC 1 cut(s) 756
PspPI GGNCC 6 cut(s) 39, 253, 289, 542, 1186, 1391
PsuI RGATCY 6 cut(s) 198, 361, 811, 1073, 1194, 1645
PsyI GACNNNGTC 1 cut(s) 898
PvuI CGATCG 3 cut(s) 54, 217, 1092
RruI TCGCGA 1 cut(s) 1236
RsaI GTAC 3 cut(s) 95, 565, 1414
RsaNI GTAC 3 cut(s) 94, 564, 1413
SaqAI TTAA 5 cut(s) 947, 1335, 1659, 1784, 1874
SatI GCNGC 3 cut(s) 338, 1133, 1852
Sau96I GGNCC 6 cut(s) 39, 253, 289, 542, 1186, 1391
SchI GAGTC 5 cut(s) 908, 947, 1745, 1784, 1929
ScrFI CCNGG 7 cut(s) 196, 207, 292, 613, 1071, 1225, 1462
SfaNI GCATC 4 cut(s) 562, 955, 1696, 1792
SfcI CTRYAG 3 cut(s) 880, 969, 1717
SinI GGWCC 5 cut(s) 39, 253, 542, 1186, 1391
SsiI CCGC 6 cut(s) 5, 256, 436, 1058, 1132, 1189
SspMI CTAG 2 cut(s) 359, 1932
StyD4I CCNGG 7 cut(s) 194, 205, 290, 611, 1069, 1223, 1460
StyI CCWWGG 2 cut(s) 1080, 1141
TaiI ACGT 3 cut(s) 60, 106, 843
TaqII GACCGA 1 cut(s) 911
TatI WGTACW 2 cut(s) 563, 1412
TauI GCSGC 1 cut(s) 1135
TfiI GAWTC 3 cut(s) 274, 376, 1207
Tru1I TTAA 5 cut(s) 947, 1335, 1659, 1784, 1874
Tru9I TTAA 5 cut(s) 947, 1335, 1659, 1784, 1874
TscAI CASTG 2 cut(s) 93, 1132
TseFI GTSAC 2 cut(s) 939, 1776
TseI GCWGC 2 cut(s) 337, 1851
Tsp45I GTSAC 2 cut(s) 939, 1776
TspDTI ATGAA 8 cut(s) 486, 644, 1169, 1272, 1353, 1493, 1782, 1944
TspGWI ACGGA 1 cut(s) 1277
TspRI CASTG 2 cut(s) 93, 1132
Tth111I GACNNNGTC 1 cut(s) 898
VpaK11BI GGWCC 5 cut(s) 39, 253, 542, 1186, 1391
XapI RAATTY 4 cut(s) 473, 592, 1324, 1441
XmiI GTMKAC 2 cut(s) 789, 1623
XspI CTAG 2 cut(s) 359, 1932
Zsp2I ATGCAT 2 cut(s) 664, 1513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.