Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021895.1

Orthogroup ID

OG0004225

Physical Location & Seq

Genomic Coordinates Forward (+)

5204 .. 5545

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021895.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

atgatggcggactgctgtagaaaaccaaattggccagaacttcccattgacctttttgaattgattttatcaaaattatccctgaggtacatactgcgtttgaaagcagtttctcgttccttctacaacgctgtcgaccatgtgttacagacgtcctcctcatcattcacttgcttagcagaaccgccatggctctaccttggcatcgatggtcatggctttcgttttcaaagtcttcatcaggaattcaagttttaccactcgaatcagaacaacatggcccatggagtttcgcgatcacttttgcctaggatcgtccagaggttgcgctgcttcttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

113

Amino Acids

13.25

Weight (kDa)

9.3

Isoelectric Point (pI)

50.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004225)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15921 FvH4_4g04632 FvH4_4g05202 FvH4_4g05500 FvH4_7g24700
prunus_persica	Prupe.1G052900_v2.0.a1 Prupe.1G053000_v2.0.a1
rosa_laevigata	RLG00000032962
rosa_multiflora	Rmu_sc0002021.1_g000018 Rmu_sc0004598.1_g000005 Rmu_sc0010817.1_g000006 Rmu_sc0021895.1_g000002 Rmu_sc0021895.1_g000003
rosa_roxburghii	Rroxscaffold_1G00052700 Rroxscaffold_4G00286440
rosa_rugosa	Rorug03G0352300 Rorug03G0357300
rosa_samantha	Rh1AG366800 Rh1BG330300 Rh1CG343200 Rh1CG344600 Rh1DG361800 Rh4AG059700 Rh4BG058300 Rh4CG064000 Rh4DG054900 Rh4DG061400 Rh4DG061600 Rh5BG185200 Rh5CG205200
rosa_wichuraiana	Rw1G032280 Rw4G004780 Rw5G017140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	155
AccI	GTMKAC	1 cut(s)	135
AccII	CGCG	1 cut(s)	295
AciI	CCGC	2 cut(s)	8, 185
AclWI	GGATC	1 cut(s)	320
AcoI	YGGCCR	1 cut(s)	32
AcsI	RAATTY	1 cut(s)	245
AcyI	GRCGYC	1 cut(s)	152
AfaI	GTAC	1 cut(s)	89
AgsI	TTSAA	4 cut(s)	59, 103, 230, 250
AjuI	GAANNNNNNNTTGG	2 cut(s)	13, 45
AlwI	GGATC	1 cut(s)	320
AoxI	GGCC	2 cut(s)	32, 279
ApeKI	GCWGC	1 cut(s)	330
ApoI	RAATTY	1 cut(s)	245
AspA2I	CCTAGG	1 cut(s)	308
AspLEI	GCGC	1 cut(s)	330
AspS9I	GGNCC	1 cut(s)	280
AvrII	CCTAGG	1 cut(s)	308
AxyI	CCTNAGG	1 cut(s)	83
BalI	TGGCCA	1 cut(s)	34
BbsI	GAAGAC	1 cut(s)	227
BbvI	GCAGC	1 cut(s)	317
BccI	CCATC	1 cut(s)	203
BfaI	CTAG	1 cut(s)	309
BfmI	CTRYAG	1 cut(s)	16
BisI	GCNGC	1 cut(s)	331
BlnI	CCTAGG	1 cut(s)	308
BlpI	GCTNAGC	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	280
BmsI	GCATC	1 cut(s)	213
BpiI	GAAGAC	1 cut(s)	227
Bpu1102I	GCTNAGC	1 cut(s)	175
Bsa29I	ATCGAT	1 cut(s)	207
BsaHI	GRCGYC	1 cut(s)	152
BsaJI	CCNNGG	4 cut(s)	188, 199, 283, 308
Bse21I	CCTNAGG	1 cut(s)	83
BseCI	ATCGAT	1 cut(s)	207
BseDI	CCNNGG	4 cut(s)	188, 199, 283, 308
BseMII	CTCAG	1 cut(s)	74
BseRI	GAGGAG	1 cut(s)	148
BseXI	GCAGC	1 cut(s)	317
Bsh1236I	CGCG	1 cut(s)	295
BshFI	GGCC	2 cut(s)	34, 281
BshVI	ATCGAT	1 cut(s)	207
BsnI	GGCC	2 cut(s)	34, 281
Bsp143I	GATC	2 cut(s)	296, 312
Bsp1720I	GCTNAGC	1 cut(s)	175
Bsp19I	CCATGG	2 cut(s)	188, 283
Bsp68I	TCGCGA	1 cut(s)	295
BspACI	CCGC	2 cut(s)	8, 185
BspANI	GGCC	2 cut(s)	34, 281
BspCNI	CTCAG	1 cut(s)	75
BspDI	ATCGAT	1 cut(s)	207
BspFNI	CGCG	1 cut(s)	295
BspPI	GGATC	1 cut(s)	320
BssECI	CCNNGG	4 cut(s)	188, 199, 283, 308
BssMI	GATC	2 cut(s)	296, 312
BssNI	GRCGYC	1 cut(s)	152
BssT1I	CCWWGG	4 cut(s)	188, 199, 283, 308
BstACI	GRCGYC	1 cut(s)	152
BstDEI	CTNAG	2 cut(s)	83, 175
BstDSI	CCRYGG	2 cut(s)	188, 283
BstFNI	CGCG	1 cut(s)	295
BstHHI	GCGC	1 cut(s)	330
BstKTI	GATC	2 cut(s)	299, 315
BstMBI	GATC	2 cut(s)	296, 312
BstSFI	CTRYAG	1 cut(s)	16
BstUI	CGCG	1 cut(s)	295
BstV1I	GCAGC	1 cut(s)	317
BstV2I	GAAGAC	1 cut(s)	227
Bsu15I	ATCGAT	1 cut(s)	207
Bsu36I	CCTNAGG	1 cut(s)	83
BsuRI	GGCC	2 cut(s)	34, 281
BsuTUI	ATCGAT	1 cut(s)	207
BtgI	CCRYGG	2 cut(s)	188, 283
BtuMI	TCGCGA	1 cut(s)	295
CfoI	GCGC	1 cut(s)	330
Cfr13I	GGNCC	1 cut(s)	280
ClaI	ATCGAT	1 cut(s)	207
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	5 cut(s)	140, 189, 215, 277, 284
CviJI	RGCY	4 cut(s)	34, 193, 219, 281
CviKI_1	RGCY	4 cut(s)	34, 193, 219, 281
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	2 cut(s)	83, 175
DpnI	GATC	2 cut(s)	298, 314
DpnII	GATC	2 cut(s)	296, 312
EaeI	YGGCCR	1 cut(s)	32
EciI	GGCGGA	1 cut(s)	23
Eco130I	CCWWGG	4 cut(s)	188, 199, 283, 308
Eco81I	CCTNAGG	1 cut(s)	83
EcoRI	GAATTC	1 cut(s)	245
EcoT14I	CCWWGG	4 cut(s)	188, 199, 283, 308
ErhI	CCWWGG	4 cut(s)	188, 199, 283, 308
FaeI	CATG	5 cut(s)	143, 192, 218, 280, 287
FaiI	YATR	6 cut(s)	92, 141, 190, 216, 278, 285
FatI	CATG	5 cut(s)	139, 188, 214, 276, 283
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	1 cut(s)	331
Fsp4HI	GCNGC	1 cut(s)	331
FspBI	CTAG	1 cut(s)	309
GlaI	GCGC	1 cut(s)	329
GluI	GCNGC	1 cut(s)	331
HaeIII	GGCC	2 cut(s)	34, 281
HhaI	GCGC	1 cut(s)	330
Hin1I	GRCGYC	1 cut(s)	152
Hin1II	CATG	5 cut(s)	143, 192, 218, 280, 287
Hin6I	GCGC	1 cut(s)	328
HinP1I	GCGC	1 cut(s)	328
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HinfI	GANTC	1 cut(s)	265
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	1 cut(s)	270
Hpy188III	TCNNGA	3 cut(s)	242, 294, 319
Hpy8I	GTNNAC	1 cut(s)	136
HpyAV	CCTTC	1 cut(s)	130
HpyCH4IV	ACGT	1 cut(s)	152
HpyF3I	CTNAG	2 cut(s)	83, 175
HpySE526I	ACGT	1 cut(s)	152
Hsp92I	GRCGYC	1 cut(s)	152
Hsp92II	CATG	5 cut(s)	143, 192, 218, 280, 287
HspAI	GCGC	1 cut(s)	328
Kzo9I	GATC	2 cut(s)	296, 312
LpnPI	CCDG	4 cut(s)	48, 95, 227, 332
Lsp1109I	GCAGC	1 cut(s)	317
LweI	GCATC	1 cut(s)	213
MaeI	CTAG	1 cut(s)	309
MaeII	ACGT	1 cut(s)	152
MaeIII	GTNAC	1 cut(s)	144
MalI	GATC	2 cut(s)	298, 314
MboI	GATC	2 cut(s)	296, 312
MboII	GAAGA	1 cut(s)	227
MlsI	TGGCCA	1 cut(s)	34
MluCI	AATT	4 cut(s)	28, 59, 74, 245
MluNI	TGGCCA	1 cut(s)	34
MnlI	CCTC	4 cut(s)	78, 166, 169, 315
Mox20I	TGGCCA	1 cut(s)	34
MscI	TGGCCA	1 cut(s)	34
Msp20I	TGGCCA	1 cut(s)	34
MvnI	CGCG	1 cut(s)	295
NcoI	CCATGG	2 cut(s)	188, 283
NdeII	GATC	2 cut(s)	296, 312
NlaIII	CATG	5 cut(s)	143, 192, 218, 280, 287
NruI	TCGCGA	1 cut(s)	295
PfeI	GAWTC	1 cut(s)	265
PkrI	GCNGC	1 cut(s)	332
PspPI	GGNCC	1 cut(s)	280
RruI	TCGCGA	1 cut(s)	295
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
SalI	GTCGAC	1 cut(s)	134
SatI	GCNGC	1 cut(s)	331
Sau3AI	GATC	2 cut(s)	296, 312
Sau96I	GGNCC	1 cut(s)	280
SetI	ASST	5 cut(s)	54, 89, 155, 201, 326
SfaNI	GCATC	1 cut(s)	213
SfcI	CTRYAG	1 cut(s)	16
Sse9I	AATT	4 cut(s)	28, 59, 74, 245
SsiI	CCGC	2 cut(s)	8, 185
SspMI	CTAG	1 cut(s)	309
StyI	CCWWGG	4 cut(s)	188, 199, 283, 308
TaiI	ACGT	1 cut(s)	155
TaqI	TCGA	3 cut(s)	135, 207, 263
TasI	AATT	4 cut(s)	28, 59, 74, 245
TfiI	GAWTC	1 cut(s)	265
TseI	GCWGC	1 cut(s)	330
TspDTI	ATGAA	1 cut(s)	227
XapI	RAATTY	1 cut(s)	245
XmaJI	CCTAGG	1 cut(s)	308
XmiI	GTMKAC	1 cut(s)	135
XspI	CTAG	1 cut(s)	309
ZraI	GACGTC	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.