Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0004225

Physical Location & Seq

Genomic Coordinates Reverse (-)

9211102 .. 9212595

Gene Structure 1494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG061400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAGATCAATGAAAGATTTTAAACATAAGATATTAACCAAAGTAGTTCTGTCATCACGGCCAATTCGCAACAGCAACAAAAGAAGCAGCATTGGGGTGTTTGTGATGTACAGATTCAGTATATTCTATCCGGGTTATTTTTATCTTGCATTCTGTGTGACTGCAGATGATGAGTGGAAAAAACTTGATGAACAAAGAGCGTACCAAGATATTACGAGCTATGATAATCAGCTTTATGCTTTGTGTCATGGTTACACTAGTGTTCAAGTATGGGATTTCGTGAGTTCCTTTCCTGTTAAAAAATTGGAAATCAAAGTGGATGCATCGTCCATAGTACTCCAATTAGCAGGCTTCTACAGTTGTGCTTTCATAATCAAAACAGGCGTAGATGATCTCTTCCTGGTCCTGAAGTTTTTATGTTATAGTCTCATGAAACCGGATGTATTCCATGTTTATAAACGGGATTCCAATGATAGATGGATGGCGGTTGAATCCATTGGCAATCATGCTTTGGTTTTGAGTGTGAAACAGTCTATATTAATTTCTTCAAAAGATTCTCCAGAATATGATCAGAATTCAATCTACTCTCCGTATTTACTCTCAGATAAGAGCCCTTCCTGCAGTCGTTTAGGTTTGTTTAGTTGGAGAAACAAACAAGTGAAAGAAGTCTGTGGTGGTAAACTGGCGCCTGAAACACCACAAATTTTCTTCGTTCCAAATCCCTTTTCACACATTCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

246

Amino Acids

28.38

Weight (kDa)

9.09

Isoelectric Point (pI)

54.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	9 - 197	4.6e-21	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004225)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15921 FvH4_4g04632 FvH4_4g05202 FvH4_4g05500 FvH4_7g24700
prunus_persica	Prupe.1G052900_v2.0.a1 Prupe.1G053000_v2.0.a1
rosa_laevigata	RLG00000032962
rosa_multiflora	Rmu_sc0002021.1_g000018 Rmu_sc0004598.1_g000005 Rmu_sc0010817.1_g000006 Rmu_sc0021895.1_g000002 Rmu_sc0021895.1_g000003
rosa_roxburghii	Rroxscaffold_1G00052700 Rroxscaffold_4G00286440
rosa_rugosa	Rorug03G0352300 Rorug03G0357300
rosa_samantha	Rh1AG366800 Rh1BG330300 Rh1CG343200 Rh1CG344600 Rh1DG361800 Rh4AG059700 Rh4BG058300 Rh4CG064000 Rh4DG054900 Rh4DG061400 Rh4DG061600 Rh5BG185200 Rh5CG205200
rosa_wichuraiana	Rw1G032280 Rw4G004780 Rw5G017140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	456
AccB1I	GGYRCC	1 cut(s)	685
AciI	CCGC	1 cut(s)	485
AcoI	YGGCCR	1 cut(s)	59
AcsI	RAATTY	2 cut(s)	574, 702
AcuI	CTGAAG	1 cut(s)	428
AcyI	GRCGYC	1 cut(s)	686
AfaI	GTAC	3 cut(s)	110, 203, 336
AgsI	TTSAA	4 cut(s)	266, 491, 549, 579
AhlI	ACTAGT	1 cut(s)	257
AjnI	CCWGG	1 cut(s)	399
AjuI	GAANNNNNNNTTGG	2 cut(s)	709, 741
AluBI	AGCT	2 cut(s)	219, 232
AluI	AGCT	2 cut(s)	219, 232
Alw26I	GTCTC	1 cut(s)	431
AoxI	GGCC	1 cut(s)	59
ApeKI	GCWGC	1 cut(s)	87
ApoI	RAATTY	2 cut(s)	574, 702
AseI	ATTAAT	1 cut(s)	539
AspLEI	GCGC	1 cut(s)	688
AspS9I	GGNCC	1 cut(s)	403
AsuC2I	CCSGG	1 cut(s)	132
AvaII	GGWCC	1 cut(s)	403
BanI	GGYRCC	1 cut(s)	685
BanII	GRGCYC	1 cut(s)	614
BbvI	GCAGC	1 cut(s)	99
BccI	CCATC	2 cut(s)	471, 475
BceAI	ACGGC	1 cut(s)	74
BciT130I	CCWGG	1 cut(s)	401
BclI	TGATCA	1 cut(s)	568
BcnI	CCSGG	1 cut(s)	132
BcoDI	GTCTC	1 cut(s)	431
BcuI	ACTAGT	1 cut(s)	257
BfaI	CTAG	1 cut(s)	258
BfmI	CTRYAG	3 cut(s)	162, 355, 619
BfoI	RGCGCY	1 cut(s)	689
BisI	GCNGC	1 cut(s)	88
BlsI	GCNGC	1 cut(s)	89
BmcAI	AGTACT	1 cut(s)	336
Bme1390I	CCNGG	2 cut(s)	132, 401
Bme18I	GGWCC	1 cut(s)	403
BmgT120I	GGNCC	1 cut(s)	403
BmiI	GGNNCC	1 cut(s)	687
BmrFI	CCNGG	2 cut(s)	132, 401
BmsI	GCATC	2 cut(s)	310, 332
BpmI	CTGGAG	1 cut(s)	543
BpuMI	CCSGG	1 cut(s)	132
BsaHI	GRCGYC	1 cut(s)	686
BsaWI	WCCGGW	1 cut(s)	436
Bse1I	ACTGG	1 cut(s)	687
BseBI	CCWGG	1 cut(s)	401
BseGI	GGATG	3 cut(s)	325, 445, 486
BseMII	CTCAG	1 cut(s)	615
BseNI	ACTGG	1 cut(s)	687
BseXI	GCAGC	1 cut(s)	99
BshFI	GGCC	1 cut(s)	61
BshNI	GGYRCC	1 cut(s)	685
BsiSI	CCGG	2 cut(s)	131, 437
BsmAI	GTCTC	1 cut(s)	431
BsmI	GAATGC	1 cut(s)	149
BsnI	GGCC	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	614
Bsp1407I	TGTACA	1 cut(s)	108
Bsp143I	GATC	3 cut(s)	5, 391, 568
BspACI	CCGC	1 cut(s)	485
BspANI	GGCC	1 cut(s)	61
BspCNI	CTCAG	1 cut(s)	614
BspHI	TCATGA	1 cut(s)	429
BspLI	GGNNCC	1 cut(s)	687
BspMAI	CTGCAG	2 cut(s)	166, 623
BspT107I	GGYRCC	1 cut(s)	685
BsrGI	TGTACA	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	687
BssMI	GATC	3 cut(s)	5, 391, 568
BssNI	GRCGYC	1 cut(s)	686
Bst2UI	CCWGG	1 cut(s)	401
Bst4CI	ACNGT	2 cut(s)	359, 531
Bst6I	CTCTTC	1 cut(s)	401
BstACI	GRCGYC	1 cut(s)	686
BstAUI	TGTACA	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	349
BstDEI	CTNAG	1 cut(s)	601
BstF5I	GGATG	3 cut(s)	325, 445, 486
BstH2I	RGCGCY	1 cut(s)	689
BstHHI	GCGC	1 cut(s)	688
BstKTI	GATC	3 cut(s)	8, 394, 571
BstMAI	GTCTC	1 cut(s)	431
BstMBI	GATC	3 cut(s)	5, 391, 568
BstMWI	GCNNNNNNNGC	1 cut(s)	618
BstNI	CCWGG	1 cut(s)	401
BstSCI	CCNGG	2 cut(s)	130, 399
BstSFI	CTRYAG	3 cut(s)	162, 355, 619
BstV1I	GCAGC	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	61
BtsCI	GGATG	3 cut(s)	325, 445, 486
Cac8I	GCNNGC	1 cut(s)	349
CciI	TCATGA	1 cut(s)	429
CfoI	GCGC	1 cut(s)	688
Cfr13I	GGNCC	1 cut(s)	403
Csp6I	GTAC	3 cut(s)	109, 202, 335
CviAII	CATG	4 cut(s)	248, 430, 449, 506
CviJI	RGCY	5 cut(s)	61, 219, 232, 351, 612
CviKI_1	RGCY	5 cut(s)	61, 219, 232, 351, 612
CviQI	GTAC	3 cut(s)	109, 202, 335
DdeI	CTNAG	1 cut(s)	601
DinI	GGCGCC	1 cut(s)	687
DpnI	GATC	3 cut(s)	7, 393, 570
DpnII	GATC	3 cut(s)	5, 391, 568
DraI	TTTAAA	1 cut(s)	22
EaeI	YGGCCR	1 cut(s)	59
Eam1104I	CTCTTC	1 cut(s)	401
EarI	CTCTTC	1 cut(s)	401
Eco24I	GRGCYC	1 cut(s)	614
Eco47I	GGWCC	1 cut(s)	403
Eco57I	CTGAAG	1 cut(s)	428
EcoRI	GAATTC	1 cut(s)	574
EcoRII	CCWGG	1 cut(s)	399
EcoT22I	ATGCAT	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	614
EgeI	GGCGCC	1 cut(s)	687
EheI	GGCGCC	1 cut(s)	687
FaeI	CATG	4 cut(s)	251, 433, 452, 509
FatI	CATG	4 cut(s)	247, 429, 448, 505
FbaI	TGATCA	1 cut(s)	568
Fnu4HI	GCNGC	1 cut(s)	88
FokI	GGATG	3 cut(s)	332, 452, 493
FriOI	GRGCYC	1 cut(s)	614
Fsp4HI	GCNGC	1 cut(s)	88
FspBI	CTAG	1 cut(s)	258
GlaI	GCGC	1 cut(s)	687
GluI	GCNGC	1 cut(s)	88
GsuI	CTGGAG	1 cut(s)	543
HaeII	RGCGCY	1 cut(s)	689
HaeIII	GGCC	1 cut(s)	61
HapII	CCGG	2 cut(s)	131, 437
HhaI	GCGC	1 cut(s)	688
Hin1I	GRCGYC	1 cut(s)	686
Hin1II	CATG	4 cut(s)	251, 433, 452, 509
Hin6I	GCGC	1 cut(s)	686
HinP1I	GCGC	1 cut(s)	686
HinfI	GANTC	4 cut(s)	114, 464, 491, 554
HpaII	CCGG	2 cut(s)	131, 437
Hpy166II	GTNNAC	1 cut(s)	680
Hpy188I	TCNGA	2 cut(s)	573, 604
Hpy188III	TCNNGA	4 cut(s)	280, 406, 430, 560
Hpy8I	GTNNAC	1 cut(s)	680
HpyAV	CCTTC	1 cut(s)	624
HpyCH4III	ACNGT	2 cut(s)	359, 531
HpyCH4V	TGCA	4 cut(s)	149, 164, 323, 621
HpyF10VI	GCNNNNNNNGC	1 cut(s)	618
HpyF3I	CTNAG	1 cut(s)	601
Hsp92I	GRCGYC	1 cut(s)	686
Hsp92II	CATG	4 cut(s)	251, 433, 452, 509
HspAI	GCGC	1 cut(s)	686
KasI	GGCGCC	1 cut(s)	685
Ksp22I	TGATCA	1 cut(s)	568
Kzo9I	GATC	3 cut(s)	5, 391, 568
Lsp1109I	GCAGC	1 cut(s)	99
LweI	GCATC	2 cut(s)	310, 332
MaeI	CTAG	1 cut(s)	258
MaeIII	GTNAC	2 cut(s)	157, 251
MalI	GATC	3 cut(s)	7, 393, 570
MboI	GATC	3 cut(s)	5, 391, 568
MboII	GAAGA	3 cut(s)	388, 537, 700
MhlI	GDGCHC	1 cut(s)	614
MluCI	AATT	6 cut(s)	63, 302, 341, 540, 574, 702
Mly113I	GGCGCC	1 cut(s)	686
MmeI	TCCRAC	1 cut(s)	623
Mph1103I	ATGCAT	1 cut(s)	325
MseI	TTAA	4 cut(s)	21, 35, 297, 539
MslI	CAYNNNNRTG	1 cut(s)	95
MspI	CCGG	2 cut(s)	131, 437
MspR9I	CCNGG	2 cut(s)	132, 401
Mva1269I	GAATGC	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	401
MwoI	GCNNNNNNNGC	1 cut(s)	618
NarI	GGCGCC	1 cut(s)	686
NciI	CCSGG	1 cut(s)	132
NdeII	GATC	3 cut(s)	5, 391, 568
NlaIII	CATG	4 cut(s)	251, 433, 452, 509
NlaIV	GGNNCC	1 cut(s)	687
NmuCI	GTSAC	1 cut(s)	157
NsiI	ATGCAT	1 cut(s)	325
PagI	TCATGA	1 cut(s)	429
PctI	GAATGC	1 cut(s)	149
PfeI	GAWTC	4 cut(s)	114, 464, 491, 554
PkrI	GCNGC	1 cut(s)	89
PluTI	GGCGCC	1 cut(s)	689
PshBI	ATTAAT	1 cut(s)	539
PsiI	TTATAA	1 cut(s)	456
Psp6I	CCWGG	1 cut(s)	399
PspGI	CCWGG	1 cut(s)	399
PspN4I	GGNNCC	1 cut(s)	687
PspPI	GGNCC	1 cut(s)	403
PstI	CTGCAG	2 cut(s)	166, 623
RsaI	GTAC	3 cut(s)	110, 203, 336
RsaNI	GTAC	3 cut(s)	109, 202, 335
RseI	CAYNNNNRTG	1 cut(s)	95
SaqAI	TTAA	4 cut(s)	21, 35, 297, 539
SatI	GCNGC	1 cut(s)	88
Sau3AI	GATC	3 cut(s)	5, 391, 568
Sau96I	GGNCC	1 cut(s)	403
ScaI	AGTACT	1 cut(s)	336
ScrFI	CCNGG	2 cut(s)	132, 401
SduI	GDGCHC	1 cut(s)	614
SetI	ASST	3 cut(s)	221, 234, 634
SfaNI	GCATC	2 cut(s)	310, 332
SfcI	CTRYAG	3 cut(s)	162, 355, 619
SfoI	GGCGCC	1 cut(s)	687
SinI	GGWCC	1 cut(s)	403
SmiMI	CAYNNNNRTG	1 cut(s)	95
SpeI	ACTAGT	1 cut(s)	257
Sse9I	AATT	6 cut(s)	63, 302, 341, 540, 574, 702
SsiI	CCGC	1 cut(s)	485
SspDI	GGCGCC	1 cut(s)	685
SspMI	CTAG	1 cut(s)	258
StyD4I	CCNGG	2 cut(s)	130, 399
TaaI	ACNGT	2 cut(s)	359, 531
TaqI	TCGA	1 cut(s)	736
TasI	AATT	6 cut(s)	63, 302, 341, 540, 574, 702
TatI	WGTACW	2 cut(s)	108, 334
TfiI	GAWTC	4 cut(s)	114, 464, 491, 554
Tru1I	TTAA	4 cut(s)	21, 35, 297, 539
Tru9I	TTAA	4 cut(s)	21, 35, 297, 539
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	1 cut(s)	87
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	4 cut(s)	26, 204, 358, 446
TspGWI	ACGGA	1 cut(s)	579
VpaK11BI	GGWCC	1 cut(s)	403
VspI	ATTAAT	1 cut(s)	539
XapI	RAATTY	2 cut(s)	574, 702
XspI	CTAG	1 cut(s)	258
ZrmI	AGTACT	1 cut(s)	336
Zsp2I	ATGCAT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.