Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004225

Physical Location & Seq

Genomic Coordinates Forward (+)

4769779 .. 4771407

Gene Structure 1629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g05500.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGCTAACGAAACAACCCTGCAGTCCACCAAACTAAGAAGTAGAAAACCAAATTGGTCCGAACTTCCTATTGACCCTTGTGAAACAATCTTATCAAAACTGACCCCAAAATCCATACTACGATTCAAGGCAGTTGGTCCTTCATGGAAAAGGGCAGTCGAATTCATCCTGAGGTCATCATCATTCACTTGTGCACAAGAACCACCATGGCACCTCCTTCACCAGCAAGATGGTCACTGTGGGTTTTGTTTTTACAGTTTTGAAGGAAAGACTTACAACTTGAAAAAGAACATGCCTGAGGAGTTAGGTCATAGTGTTTGCCTCACTTCTTATCAAGGCTGGCGGCTCCTTGTCTTGCAGAAGATGAACTTTTCAAAGCTTCTCCTCTTTAATCCCTTATCGGGTACACAACTTCTACTCCCACCTCTCAGAAGTTTCCCAGATATACTTTACATTGCTCATATCCATGATGATGGCTCGTCTAAAATCCATATCAAAATCGCCAATCCTGATCCCACTACACCACCACAATCGTTCTGTTTAGATATCAAATCAGCCGGAGATATTAGGAGAAAGTTTATAACCAAAGCAGTAATTCTGTCCTCACGGCCAATTCTCAACAGCAACAACAAAAGAAGCAGCAGCATTGGGGTGTTTGTAATGTACAGATATGTGACGCAGAAGATGATGCGTGGTTTTTCTATGGCGTTCTGTACGACTGAAGATGATGAATGGACAAAACTTGATGAACAAAGAGCATACCGAGATATTACGAGCTATGAGAATCAGCTTTATGCTTTGTGTTGGGATCACACTACTGTTCAAGTATGGGATCTCGTGATGAGTTCGTTTCCAGTCAAAAAATTGGAAATCAAAGTGGACGCGCCGTCTATAGTATTAGACACCCCAACGAACTGGTTCCGTATTCCTTACATAATCAAAACAGGCGTCGATGATCTTTTCCTGGTCGTTCTGCTCTTGGATCGTAGTTTCATGGAACCAACTGTGTTCCATCTTTTTAAACGGGATTCCAATGATAGATGGATGGCGGTCGACTCCATTGGCGATCATGCTTTGGTTTTGGGTTTGATCAGACAGTGGAGAAACAAAGTCAAAGAAGTCTGTGTTGATGTGCCGCTTGGTATGGTTTTGTTTGTTCCAAACCCCTTTTCACGTATTCGAGCTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

397

Amino Acids

45.63

Weight (kDa)

9.1

Isoelectric Point (pI)

51.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	84 - 364	1.1e-26	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004225)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15921 FvH4_4g04632 FvH4_4g05202 FvH4_4g05500 FvH4_7g24700
prunus_persica	Prupe.1G052900_v2.0.a1 Prupe.1G053000_v2.0.a1
rosa_laevigata	RLG00000032962
rosa_multiflora	Rmu_sc0002021.1_g000018 Rmu_sc0004598.1_g000005 Rmu_sc0010817.1_g000006 Rmu_sc0021895.1_g000002 Rmu_sc0021895.1_g000003
rosa_roxburghii	Rroxscaffold_1G00052700 Rroxscaffold_4G00286440
rosa_rugosa	Rorug03G0352300 Rorug03G0357300
rosa_samantha	Rh1AG366800 Rh1BG330300 Rh1CG343200 Rh1CG344600 Rh1DG361800 Rh4AG059700 Rh4BG058300 Rh4CG064000 Rh4DG054900 Rh4DG061400 Rh4DG061600 Rh5BG185200 Rh5CG205200
rosa_wichuraiana	Rw1G032280 Rw4G004780 Rw5G017140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	581
AccB1I	GGYRCC	1 cut(s)	210
AccI	GTMKAC	1 cut(s)	1053
AccII	CGCG	1 cut(s)	884
AciI	CCGC	3 cut(s)	343, 1049, 1136
AclWI	GGATC	4 cut(s)	506, 816, 840, 990
AcoI	YGGCCR	1 cut(s)	608
AcsI	RAATTY	1 cut(s)	161
AcuI	CTGAAG	1 cut(s)	741
AcyI	GRCGYC	1 cut(s)	948
AfaI	GTAC	3 cut(s)	406, 665, 715
AfiI	CCNNNNNNNGG	1 cut(s)	401
AgsI	TTSAA	5 cut(s)	127, 263, 283, 375, 824
AhdI	GACNNNNNGTC	1 cut(s)	886
AjnI	CCWGG	1 cut(s)	963
AjuI	GAANNNNNNNTTGG	4 cut(s)	37, 69, 1153, 1185
AluBI	AGCT	4 cut(s)	379, 777, 790, 1184
AluI	AGCT	4 cut(s)	379, 777, 790, 1184
Alw21I	GWGCWC	1 cut(s)	196
Alw44I	GTGCAC	1 cut(s)	192
AlwI	GGATC	4 cut(s)	506, 816, 840, 990
AoxI	GGCC	1 cut(s)	608
ApaLI	GTGCAC	1 cut(s)	192
ApeKI	GCWGC	2 cut(s)	639, 642
ApoI	RAATTY	1 cut(s)	161
ArsI	GACNNNNNNTTYG	2 cut(s)	933, 965
Asp700I	GAANNNNTTC	1 cut(s)	917
AspLEI	GCGC	1 cut(s)	886
AspS9I	GGNCC	2 cut(s)	57, 137
AsuHPI	GGTGA	1 cut(s)	212
AvaII	GGWCC	2 cut(s)	57, 137
AxyI	CCTNAGG	2 cut(s)	170, 297
BaeGI	GKGCMC	1 cut(s)	196
BanI	GGYRCC	1 cut(s)	210
BauI	CACGAG	1 cut(s)	836
Bbv12I	GWGCWC	1 cut(s)	196
BbvI	GCAGC	2 cut(s)	651, 654
BccI	CCATC	5 cut(s)	224, 467, 1020, 1035, 1039
BceAI	ACGGC	2 cut(s)	623, 871
BciT130I	CCWGG	1 cut(s)	965
BclI	TGATCA	1 cut(s)	1089
BfmI	CTRYAG	2 cut(s)	20, 891
BisI	GCNGC	4 cut(s)	344, 640, 643, 1136
BlsI	GCNGC	4 cut(s)	345, 641, 644, 1137
Bme1390I	CCNGG	1 cut(s)	965
Bme18I	GGWCC	2 cut(s)	57, 137
BmeRI	GACNNNNNGTC	1 cut(s)	886
BmgT120I	GGNCC	2 cut(s)	57, 137
BmiI	GGNNCC	4 cut(s)	212, 347, 920, 999
BmrFI	CCNGG	1 cut(s)	965
BmsI	GCATC	1 cut(s)	678
BsaAI	YACGTR	1 cut(s)	1175
BsaHI	GRCGYC	1 cut(s)	948
BsaJI	CCNNGG	1 cut(s)	206
BsaXI	ACNNNNNCTCC	2 cut(s)	402, 432
Bsc4I	CCNNNNNNNGG	1 cut(s)	401
Bse1I	ACTGG	2 cut(s)	854, 920
Bse21I	CCTNAGG	2 cut(s)	170, 297
Bse3DI	GCAATG	1 cut(s)	453
BseBI	CCWGG	1 cut(s)	965
BseDI	CCNNGG	1 cut(s)	206
BseGI	GGATG	2 cut(s)	165, 1050
BseLI	CCNNNNNNNGG	1 cut(s)	401
BseMI	GCAATG	1 cut(s)	453
BseMII	CTCAG	3 cut(s)	161, 288, 442
BseNI	ACTGG	2 cut(s)	854, 920
BseRI	GAGGAG	2 cut(s)	314, 374
BseSI	GKGCMC	1 cut(s)	196
BseXI	GCAGC	2 cut(s)	651, 654
Bsh1236I	CGCG	1 cut(s)	884
Bsh1285I	CGRYCG	1 cut(s)	1053
BshFI	GGCC	1 cut(s)	610
BshNI	GGYRCC	1 cut(s)	210
BsiEI	CGRYCG	1 cut(s)	1053
BsiHKAI	GWGCWC	1 cut(s)	196
BsiSI	CCGG	1 cut(s)	558
BslI	CCNNNNNNNGG	1 cut(s)	401
BsnI	GGCC	1 cut(s)	610
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp1407I	TGTACA	1 cut(s)	663
Bsp143I	GATC	7 cut(s)	511, 808, 832, 955, 982, 1066, 1089
Bsp19I	CCATGG	1 cut(s)	206
BspACI	CCGC	3 cut(s)	343, 1049, 1136
BspANI	GGCC	1 cut(s)	610
BspCNI	CTCAG	3 cut(s)	162, 289, 441
BspFNI	CGCG	1 cut(s)	884
BspLI	GGNNCC	4 cut(s)	212, 347, 920, 999
BspMAI	CTGCAG	1 cut(s)	24
BspPI	GGATC	4 cut(s)	506, 816, 840, 990
BspT107I	GGYRCC	1 cut(s)	210
BsrDI	GCAATG	1 cut(s)	453
BsrGI	TGTACA	1 cut(s)	663
BsrI	ACTGG	2 cut(s)	854, 920
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	7 cut(s)	511, 808, 832, 955, 982, 1066, 1089
BssNI	GRCGYC	1 cut(s)	948
BssSI	CACGAG	1 cut(s)	836
BssT1I	CCWWGG	1 cut(s)	206
Bst2BI	CACGAG	1 cut(s)	836
Bst2UI	CCWGG	1 cut(s)	965
Bst4CI	ACNGT	5 cut(s)	239, 257, 820, 1006, 1098
BstACI	GRCGYC	1 cut(s)	948
BstAUI	TGTACA	1 cut(s)	663
BstBAI	YACGTR	1 cut(s)	1175
BstC8I	GCNNGC	1 cut(s)	341
BstDEI	CTNAG	4 cut(s)	35, 170, 297, 428
BstDSI	CCRYGG	1 cut(s)	206
BstF5I	GGATG	2 cut(s)	165, 1050
BstFNI	CGCG	1 cut(s)	884
BstHHI	GCGC	1 cut(s)	886
BstKTI	GATC	7 cut(s)	514, 811, 835, 958, 985, 1069, 1092
BstMBI	GATC	7 cut(s)	511, 808, 832, 955, 982, 1066, 1089
BstMCI	CGRYCG	1 cut(s)	1053
BstNI	CCWGG	1 cut(s)	965
BstNSI	RCATGY	1 cut(s)	295
BstSCI	CCNGG	1 cut(s)	963
BstSFI	CTRYAG	2 cut(s)	20, 891
BstSLI	GKGCMC	1 cut(s)	196
BstUI	CGCG	1 cut(s)	884
BstV1I	GCAGC	2 cut(s)	651, 654
BstX2I	RGATCY	1 cut(s)	832
BstXI	CCANNNNNNTGG	3 cut(s)	230, 473, 915
BstYI	RGATCY	1 cut(s)	832
Bsu36I	CCTNAGG	2 cut(s)	170, 297
BsuRI	GGCC	1 cut(s)	610
BtgI	CCRYGG	1 cut(s)	206
BtsCI	GGATG	2 cut(s)	165, 1050
BtsIMutI	CAGTG	2 cut(s)	235, 1103
Cac8I	GCNNGC	1 cut(s)	341
CfoI	GCGC	1 cut(s)	886
Cfr13I	GGNCC	2 cut(s)	57, 137
CseI	GACGC	3 cut(s)	685, 890, 937
Csp6I	GTAC	3 cut(s)	405, 664, 714
CviAII	CATG	6 cut(s)	144, 207, 292, 467, 994, 1070
CviQI	GTAC	3 cut(s)	405, 664, 714
DdeI	CTNAG	4 cut(s)	35, 170, 297, 428
DpnI	GATC	7 cut(s)	513, 810, 834, 957, 984, 1068, 1091
DpnII	GATC	7 cut(s)	511, 808, 832, 955, 982, 1066, 1089
DraI	TTTAAA	1 cut(s)	1021
DriI	GACNNNNNGTC	1 cut(s)	886
EaeI	YGGCCR	1 cut(s)	608
Eam1105I	GACNNNNNGTC	1 cut(s)	886
Eco130I	CCWWGG	1 cut(s)	206
Eco32I	GATATC	1 cut(s)	547
Eco47I	GGWCC	2 cut(s)	57, 137
Eco57I	CTGAAG	1 cut(s)	741
Eco81I	CCTNAGG	2 cut(s)	170, 297
EcoRI	GAATTC	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	963
EcoRV	GATATC	1 cut(s)	547
EcoT14I	CCWWGG	1 cut(s)	206
ErhI	CCWWGG	1 cut(s)	206
FaeI	CATG	6 cut(s)	147, 210, 295, 470, 997, 1073
FalI	AAGNNNNNCTT	2 cut(s)	353, 385
FatI	CATG	6 cut(s)	143, 206, 291, 466, 993, 1069
FbaI	TGATCA	1 cut(s)	1089
FblI	GTMKAC	1 cut(s)	1053
Fnu4HI	GCNGC	4 cut(s)	344, 640, 643, 1136
FokI	GGATG	2 cut(s)	152, 1057
Fsp4HI	GCNGC	4 cut(s)	344, 640, 643, 1136
GlaI	GCGC	1 cut(s)	885
GluI	GCNGC	4 cut(s)	344, 640, 643, 1136
HaeIII	GGCC	1 cut(s)	610
HapII	CCGG	1 cut(s)	558
HgaI	GACGC	3 cut(s)	685, 890, 937
HhaI	GCGC	1 cut(s)	886
Hin1I	GRCGYC	1 cut(s)	948
Hin1II	CATG	6 cut(s)	147, 210, 295, 470, 997, 1073
Hin6I	GCGC	1 cut(s)	884
HinP1I	GCGC	1 cut(s)	884
HincII	GTYRAC	1 cut(s)	1054
HindII	GTYRAC	1 cut(s)	1054
HindIII	AAGCTT	1 cut(s)	377
HinfI	GANTC	4 cut(s)	123, 784, 1028, 1055
HpaII	CCGG	1 cut(s)	558
HphI	GGTGA	1 cut(s)	212
Hpy166II	GTNNAC	5 cut(s)	27, 194, 407, 880, 1054
Hpy188I	TCNGA	3 cut(s)	61, 431, 1094
Hpy188III	TCNNGA	3 cut(s)	169, 509, 838
Hpy8I	GTNNAC	5 cut(s)	27, 194, 407, 880, 1054
Hpy99I	CGWCG	1 cut(s)	953
HpyAV	CCTTC	3 cut(s)	150, 227, 257
HpyCH4III	ACNGT	5 cut(s)	239, 257, 820, 1006, 1098
HpyCH4IV	ACGT	1 cut(s)	1174
HpyCH4V	TGCA	3 cut(s)	22, 194, 358
HpyF3I	CTNAG	4 cut(s)	35, 170, 297, 428
HpySE526I	ACGT	1 cut(s)	1174
Hsp92I	GRCGYC	1 cut(s)	948
Hsp92II	CATG	6 cut(s)	147, 210, 295, 470, 997, 1073
HspAI	GCGC	1 cut(s)	884
Ksp22I	TGATCA	1 cut(s)	1089
Kzo9I	GATC	7 cut(s)	511, 808, 832, 955, 982, 1066, 1089
LmnI	GCTCC	1 cut(s)	351
Lsp1109I	GCAGC	2 cut(s)	651, 654
LweI	GCATC	1 cut(s)	678
MaeII	ACGT	1 cut(s)	1174
MaeIII	GTNAC	2 cut(s)	233, 673
MalI	GATC	7 cut(s)	513, 810, 834, 957, 984, 1068, 1091
MboI	GATC	7 cut(s)	511, 808, 832, 955, 982, 1066, 1089
MboII	GAAGA	3 cut(s)	373, 694, 734
MflI	RGATCY	1 cut(s)	832
MhlI	GDGCHC	1 cut(s)	196
MluCI	AATT	6 cut(s)	52, 161, 594, 612, 863, 1186
MlyI	GAGTC	1 cut(s)	1049
MnlI	CCTC	7 cut(s)	165, 224, 292, 332, 395, 435, 613
MroXI	GAANNNNTTC	1 cut(s)	917
MseI	TTAA	2 cut(s)	390, 1020
MslI	CAYNNNNRTG	3 cut(s)	465, 471, 650
MspI	CCGG	1 cut(s)	558
MspR9I	CCNGG	1 cut(s)	965
MvaI	CCWGG	1 cut(s)	965
MvnI	CGCG	1 cut(s)	884
NcoI	CCATGG	1 cut(s)	206
NdeII	GATC	7 cut(s)	511, 808, 832, 955, 982, 1066, 1089
NlaIII	CATG	6 cut(s)	147, 210, 295, 470, 997, 1073
NlaIV	GGNNCC	4 cut(s)	212, 347, 920, 999
NmuCI	GTSAC	2 cut(s)	233, 673
NspI	RCATGY	1 cut(s)	295
PdmI	GAANNNNTTC	1 cut(s)	917
PfeI	GAWTC	3 cut(s)	123, 784, 1028
PkrI	GCNGC	4 cut(s)	345, 641, 644, 1137
PleI	GAGTC	1 cut(s)	1049
PpsI	GAGTC	1 cut(s)	1049
Ppu21I	YACGTR	1 cut(s)	1175
PsiI	TTATAA	1 cut(s)	581
Psp6I	CCWGG	1 cut(s)	963
PspGI	CCWGG	1 cut(s)	963
PspN4I	GGNNCC	4 cut(s)	212, 347, 920, 999
PspPI	GGNCC	2 cut(s)	57, 137
PstI	CTGCAG	1 cut(s)	24
PsuI	RGATCY	1 cut(s)	832
RsaI	GTAC	3 cut(s)	406, 665, 715
RsaNI	GTAC	3 cut(s)	405, 664, 714
RseI	CAYNNNNRTG	3 cut(s)	465, 471, 650
SalI	GTCGAC	1 cut(s)	1052
SaqAI	TTAA	2 cut(s)	390, 1020
SatI	GCNGC	4 cut(s)	344, 640, 643, 1136
Sau3AI	GATC	7 cut(s)	511, 808, 832, 955, 982, 1066, 1089
Sau96I	GGNCC	2 cut(s)	57, 137
SchI	GAGTC	1 cut(s)	1049
ScrFI	CCNGG	1 cut(s)	965
SduI	GDGCHC	1 cut(s)	196
SetI	ASST	9 cut(s)	176, 216, 310, 381, 427, 779, 792, 1177, 1186
SfaNI	GCATC	1 cut(s)	678
SfcI	CTRYAG	2 cut(s)	20, 891
SinI	GGWCC	2 cut(s)	57, 137
SmiMI	CAYNNNNRTG	3 cut(s)	465, 471, 650
Sse9I	AATT	6 cut(s)	52, 161, 594, 612, 863, 1186
SsiI	CCGC	3 cut(s)	343, 1049, 1136
StyD4I	CCNGG	1 cut(s)	963
StyI	CCWWGG	1 cut(s)	206
TaaI	ACNGT	5 cut(s)	239, 257, 820, 1006, 1098
TaiI	ACGT	1 cut(s)	1177
TaqI	TCGA	4 cut(s)	159, 951, 1053, 1180
TasI	AATT	6 cut(s)	52, 161, 594, 612, 863, 1186
TatI	WGTACW	1 cut(s)	663
TauI	GCSGC	2 cut(s)	346, 1138
TfiI	GAWTC	3 cut(s)	123, 784, 1028
Tru1I	TTAA	2 cut(s)	390, 1020
Tru9I	TTAA	2 cut(s)	390, 1020
TscAI	CASTG	2 cut(s)	242, 1103
TseFI	GTSAC	2 cut(s)	233, 673
TseI	GCWGC	2 cut(s)	639, 642
Tsp45I	GTSAC	2 cut(s)	233, 673
TspDTI	ATGAA	6 cut(s)	132, 154, 380, 744, 762, 982
TspGWI	ACGGA	1 cut(s)	911
TspRI	CASTG	2 cut(s)	242, 1103
VneI	GTGCAC	1 cut(s)	192
VpaK11BI	GGWCC	2 cut(s)	57, 137
XapI	RAATTY	1 cut(s)	161
XceI	RCATGY	1 cut(s)	295
XmiI	GTMKAC	1 cut(s)	1053
XmnI	GAANNNNTTC	1 cut(s)	917

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.