Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004225

Physical Location & Seq

Genomic Coordinates Reverse (-)

73431677 .. 73433008

Gene Structure 1332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00052700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGATTCCAATTGGGCTGAAATTTGGAGTGATTTTATCAAAATTACCCTTGAGAAGCATACTGCGCTGGAAAGCAGTTTGGCGTTCATGCTATAATGTGACCAAAGATATCTTAGAGACATCCACGTCATTCACTTGGTTAGCAGAAGCCCCCTGGCTTCTTCTTTACCAAGATATTGATCATGACGATTTGGAGGACGTTAACGATGATGCTGGTCATGATGAAGGGTCCCTTTTTGAGAAAATTATCGAGGAAGAAGAGGGCCTTTGCATTGATAGGGAAGATAACCTCTTAAGGAGGAAGAAGAAGCCCTTTGTTTTTTATAATCTTGAAGGCATAAAGTTTTCCAAGTCGAAGAACAGCATACCTGAGGAGTTACACCATGGTGCTTTCCTCGGATCTTCTCAAGGTTGGCTGCTTTTCATGAACAAGAAGCTAGAGTTTGTGCTCTTGAATCCCTTGTTATCTGGGACGTCTCAACTTTCACTCCCGCCGCTCTCTGATTTTCCGGATATAATTAACATAACATATGATCTTGATGGCCCCATAATCACAGGCAGCATACGAGAAAGACATTCATATCCTGCAATAAGGATTTTCACATCTTTGGAGGATTTTTGGAAAAGGTTCAGGACCAAAGTTGTAGTGTGTCCGCAGCCGACTTGCAGCAGCAGCAGGAGCAGGAACAACATTTTTGGGGTCATGATCATGTACTGTATCGTCAATAATCCACGGCTTGCAGGAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

249

Amino Acids

28.6

Weight (kDa)

5.81

Isoelectric Point (pI)

54.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	119 - 237	2.4e-07	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004225)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15921 FvH4_4g04632 FvH4_4g05202 FvH4_4g05500 FvH4_7g24700
prunus_persica	Prupe.1G052900_v2.0.a1 Prupe.1G053000_v2.0.a1
rosa_laevigata	RLG00000032962
rosa_multiflora	Rmu_sc0002021.1_g000018 Rmu_sc0004598.1_g000005 Rmu_sc0010817.1_g000006 Rmu_sc0021895.1_g000002 Rmu_sc0021895.1_g000003
rosa_roxburghii	Rroxscaffold_1G00052700 Rroxscaffold_4G00286440
rosa_rugosa	Rorug03G0352300 Rorug03G0357300
rosa_samantha	Rh1AG366800 Rh1BG330300 Rh1CG343200 Rh1CG344600 Rh1DG361800 Rh4AG059700 Rh4BG058300 Rh4CG064000 Rh4DG054900 Rh4DG061400 Rh4DG061600 Rh5BG185200 Rh5CG205200
rosa_wichuraiana	Rw1G032280 Rw4G004780 Rw5G017140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	324
AasI	GACNNNNNNGTC	1 cut(s)	124
AatII	GACGTC	1 cut(s)	476
AccBSI	CCGCTC	1 cut(s)	496
AccIII	TCCGGA	1 cut(s)	508
AciI	CCGC	3 cut(s)	491, 494, 653
AclWI	GGATC	1 cut(s)	406
AcsI	RAATTY	1 cut(s)	20
AcyI	GRCGYC	1 cut(s)	473
AfaI	GTAC	1 cut(s)	713
AflII	CTTAAG	1 cut(s)	292
AgsI	TTSAA	2 cut(s)	332, 454
AjiI	CACGTC	1 cut(s)	126
AjnI	CCWGG	1 cut(s)	152
AleI	CACNNNNGTG	1 cut(s)	384
AluBI	AGCT	1 cut(s)	436
AluI	AGCT	1 cut(s)	436
Alw21I	GWGCWC	1 cut(s)	450
Alw26I	GTCTC	2 cut(s)	110, 480
AlwI	GGATC	1 cut(s)	406
Aor13HI	TCCGGA	1 cut(s)	508
AoxI	GGCC	2 cut(s)	262, 541
ApeKI	GCWGC	6 cut(s)	415, 558, 655, 666, 669, 672
ApoI	RAATTY	1 cut(s)	20
Asp700I	GAANNNNTTC	1 cut(s)	626
AspLEI	GCGC	1 cut(s)	66
AspS9I	GGNCC	4 cut(s)	228, 262, 542, 633
AvaII	GGWCC	2 cut(s)	228, 633
AxyI	CCTNAGG	1 cut(s)	369
Bbv12I	GWGCWC	1 cut(s)	450
BbvI	GCAGC	6 cut(s)	402, 570, 667, 678, 681, 684
BccI	CCATC	1 cut(s)	533
BciT130I	CCWGG	1 cut(s)	154
BclI	TGATCA	2 cut(s)	178, 705
BcoDI	GTCTC	2 cut(s)	110, 480
BfaI	CTAG	1 cut(s)	437
BfrI	CTTAAG	1 cut(s)	292
BisI	GCNGC	7 cut(s)	416, 494, 559, 656, 667, 670, 673
BlsI	GCNGC	7 cut(s)	417, 495, 560, 657, 668, 671, 674
Bme1390I	CCNGG	1 cut(s)	154
Bme18I	GGWCC	2 cut(s)	228, 633
BmgBI	CACGTC	1 cut(s)	126
BmgT120I	GGNCC	4 cut(s)	228, 262, 542, 633
BmiI	GGNNCC	3 cut(s)	229, 230, 544
BmrFI	CCNGG	1 cut(s)	154
BmsI	GCATC	1 cut(s)	199
BpuEI	CTTGAG	2 cut(s)	70, 390
BsaBI	GATNNNNATC	1 cut(s)	177
BsaHI	GRCGYC	1 cut(s)	473
BsaJI	CCNNGG	4 cut(s)	152, 382, 394, 731
BsaWI	WCCGGW	1 cut(s)	508
BsaXI	ACNNNNNCTCC	2 cut(s)	471, 501
Bse21I	CCTNAGG	1 cut(s)	369
Bse8I	GATNNNNATC	1 cut(s)	177
BseAI	TCCGGA	1 cut(s)	508
BseBI	CCWGG	1 cut(s)	154
BseDI	CCNNGG	4 cut(s)	152, 382, 394, 731
BseGI	GGATG	1 cut(s)	119
BseJI	GATNNNNATC	1 cut(s)	177
BseMII	CTCAG	1 cut(s)	360
BseRI	GAGGAG	1 cut(s)	386
BseXI	GCAGC	6 cut(s)	402, 570, 667, 678, 681, 684
BshFI	GGCC	2 cut(s)	264, 543
BsiHKAI	GWGCWC	1 cut(s)	450
BsiSI	CCGG	1 cut(s)	509
BslFI	GGGAC	2 cut(s)	214, 484
BsmAI	GTCTC	2 cut(s)	110, 480
BsmBI	CGTCTC	1 cut(s)	480
BsmFI	GGGAC	2 cut(s)	214, 484
BsnI	GGCC	2 cut(s)	264, 543
Bsp1286I	GDGCHC	1 cut(s)	450
Bsp13I	TCCGGA	1 cut(s)	508
Bsp143I	GATC	4 cut(s)	178, 398, 532, 705
Bsp19I	CCATGG	1 cut(s)	382
BspACI	CCGC	3 cut(s)	491, 494, 653
BspANI	GGCC	2 cut(s)	264, 543
BspCNI	CTCAG	1 cut(s)	361
BspEI	TCCGGA	1 cut(s)	508
BspHI	TCATGA	4 cut(s)	181, 217, 423, 702
BspLI	GGNNCC	3 cut(s)	229, 230, 544
BspPI	GGATC	1 cut(s)	406
BspTI	CTTAAG	1 cut(s)	292
BsrBI	CCGCTC	1 cut(s)	496
BssECI	CCNNGG	4 cut(s)	152, 382, 394, 731
BssMI	GATC	4 cut(s)	178, 398, 532, 705
BssNI	GRCGYC	1 cut(s)	473
BssT1I	CCWWGG	1 cut(s)	382
Bst2UI	CCWGG	1 cut(s)	154
Bst4CI	ACNGT	1 cut(s)	716
Bst6I	CTCTTC	1 cut(s)	252
BstACI	GRCGYC	1 cut(s)	473
BstAFI	CTTAAG	1 cut(s)	292
BstC8I	GCNNGC	1 cut(s)	738
BstDEI	CTNAG	2 cut(s)	112, 369
BstDSI	CCRYGG	2 cut(s)	382, 731
BstF5I	GGATG	1 cut(s)	119
BstHHI	GCGC	1 cut(s)	66
BstKTI	GATC	4 cut(s)	181, 401, 535, 708
BstMAI	GTCTC	2 cut(s)	110, 480
BstMBI	GATC	4 cut(s)	178, 398, 532, 705
BstMWI	GCNNNNNNNGC	3 cut(s)	63, 672, 678
BstNI	CCWGG	1 cut(s)	154
BstSCI	CCNGG	1 cut(s)	152
BstV1I	GCAGC	6 cut(s)	402, 570, 667, 678, 681, 684
BstX2I	RGATCY	1 cut(s)	398
BstYI	RGATCY	1 cut(s)	398
Bsu36I	CCTNAGG	1 cut(s)	369
BsuRI	GGCC	2 cut(s)	264, 543
BtgI	CCRYGG	2 cut(s)	382, 731
BtrI	CACGTC	1 cut(s)	126
BtsCI	GGATG	1 cut(s)	119
Cac8I	GCNNGC	1 cut(s)	738
CciI	TCATGA	4 cut(s)	181, 217, 423, 702
CfoI	GCGC	1 cut(s)	66
Cfr13I	GGNCC	4 cut(s)	228, 262, 542, 633
Csp6I	GTAC	1 cut(s)	712
CviAII	CATG	7 cut(s)	87, 182, 218, 383, 424, 703, 709
CviQI	GTAC	1 cut(s)	712
DdeI	CTNAG	2 cut(s)	112, 369
DpnI	GATC	4 cut(s)	180, 400, 534, 707
DpnII	GATC	4 cut(s)	178, 398, 532, 705
DrdI	GACNNNNNNGTC	1 cut(s)	124
DseDI	GACNNNNNNGTC	1 cut(s)	124
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Eco130I	CCWWGG	1 cut(s)	382
Eco32I	GATATC	1 cut(s)	109
Eco47I	GGWCC	2 cut(s)	228, 633
Eco81I	CCTNAGG	1 cut(s)	369
EcoO109I	RGGNCCY	2 cut(s)	228, 262
EcoRII	CCWGG	1 cut(s)	152
EcoRV	GATATC	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	382
ErhI	CCWWGG	1 cut(s)	382
Esp3I	CGTCTC	1 cut(s)	480
FaeI	CATG	7 cut(s)	90, 185, 221, 386, 427, 706, 712
FalI	AAGNNNNNCTT	6 cut(s)	216, 248, 249, 281, 296, 328
FaqI	GGGAC	2 cut(s)	214, 484
FatI	CATG	7 cut(s)	86, 181, 217, 382, 423, 702, 708
FauI	CCCGC	1 cut(s)	498
FauNDI	CATATG	1 cut(s)	529
FbaI	TGATCA	2 cut(s)	178, 705
Fnu4HI	GCNGC	7 cut(s)	416, 494, 559, 656, 667, 670, 673
FokI	GGATG	1 cut(s)	106
Fsp4HI	GCNGC	7 cut(s)	416, 494, 559, 656, 667, 670, 673
FspBI	CTAG	1 cut(s)	437
GlaI	GCGC	1 cut(s)	65
GluI	GCNGC	7 cut(s)	416, 494, 559, 656, 667, 670, 673
HaeIII	GGCC	2 cut(s)	264, 543
HapII	CCGG	1 cut(s)	509
HhaI	GCGC	1 cut(s)	66
Hin1I	GRCGYC	1 cut(s)	473
Hin1II	CATG	7 cut(s)	90, 185, 221, 386, 427, 706, 712
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	2 cut(s)	4, 454
HpaI	GTTAAC	1 cut(s)	202
HpaII	CCGG	1 cut(s)	509
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	2 cut(s)	398, 502
Hpy188III	TCNNGA	9 cut(s)	182, 218, 329, 424, 451, 509, 536, 631, 703
Hpy8I	GTNNAC	1 cut(s)	202
HpyAV	CCTTC	2 cut(s)	218, 326
HpyCH4III	ACNGT	1 cut(s)	716
HpyCH4IV	ACGT	3 cut(s)	125, 198, 473
HpyCH4V	TGCA	4 cut(s)	270, 587, 666, 740
HpyF10VI	GCNNNNNNNGC	3 cut(s)	63, 672, 678
HpyF3I	CTNAG	2 cut(s)	112, 369
HpySE526I	ACGT	3 cut(s)	125, 198, 473
Hsp92I	GRCGYC	1 cut(s)	473
Hsp92II	CATG	7 cut(s)	90, 185, 221, 386, 427, 706, 712
HspAI	GCGC	1 cut(s)	64
KflI	GGGWCCC	1 cut(s)	228
Kpn2I	TCCGGA	1 cut(s)	508
Ksp22I	TGATCA	2 cut(s)	178, 705
KspAI	GTTAAC	1 cut(s)	202
Kzo9I	GATC	4 cut(s)	178, 398, 532, 705
LmnI	GCTCC	1 cut(s)	678
Lsp1109I	GCAGC	6 cut(s)	402, 570, 667, 678, 681, 684
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	437
MaeII	ACGT	3 cut(s)	125, 198, 473
MaeIII	GTNAC	2 cut(s)	97, 375
MalI	GATC	4 cut(s)	180, 400, 534, 707
MbiI	CCGCTC	1 cut(s)	496
MboI	GATC	4 cut(s)	178, 398, 532, 705
MboII	GAAGA	8 cut(s)	152, 266, 269, 293, 313, 316, 367, 393
MfeI	CAATTG	1 cut(s)	9
MflI	RGATCY	1 cut(s)	398
MhlI	GDGCHC	1 cut(s)	450
MluCI	AATT	5 cut(s)	9, 20, 41, 243, 516
MnlI	CCTC	8 cut(s)	187, 244, 253, 291, 299, 364, 404, 604
MroI	TCCGGA	1 cut(s)	508
MroXI	GAANNNNTTC	1 cut(s)	626
MseI	TTAA	3 cut(s)	201, 293, 519
MslI	CAYNNNNRTG	2 cut(s)	384, 707
MspCI	CTTAAG	1 cut(s)	292
MspI	CCGG	1 cut(s)	509
MspR9I	CCNGG	1 cut(s)	154
MunI	CAATTG	1 cut(s)	9
MvaI	CCWGG	1 cut(s)	154
MwoI	GCNNNNNNNGC	3 cut(s)	63, 672, 678
NcoI	CCATGG	1 cut(s)	382
NdeI	CATATG	1 cut(s)	529
NdeII	GATC	4 cut(s)	178, 398, 532, 705
NlaIII	CATG	7 cut(s)	90, 185, 221, 386, 427, 706, 712
NlaIV	GGNNCC	3 cut(s)	229, 230, 544
NmuCI	GTSAC	1 cut(s)	97
OliI	CACNNNNGTG	1 cut(s)	384
PagI	TCATGA	4 cut(s)	181, 217, 423, 702
PdmI	GAANNNNTTC	1 cut(s)	626
PfeI	GAWTC	2 cut(s)	4, 454
PkrI	GCNGC	7 cut(s)	417, 495, 560, 657, 668, 671, 674
PpuMI	RGGWCCY	1 cut(s)	228
PsiI	TTATAA	1 cut(s)	324
Psp5II	RGGWCCY	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	152
PspN4I	GGNNCC	3 cut(s)	229, 230, 544
PspPI	GGNCC	4 cut(s)	228, 262, 542, 633
PspPPI	RGGWCCY	1 cut(s)	228
PsuI	RGATCY	1 cut(s)	398
RsaI	GTAC	1 cut(s)	713
RsaNI	GTAC	1 cut(s)	712
RseI	CAYNNNNRTG	2 cut(s)	384, 707
SaqAI	TTAA	3 cut(s)	201, 293, 519
SatI	GCNGC	7 cut(s)	416, 494, 559, 656, 667, 670, 673
Sau3AI	GATC	4 cut(s)	178, 398, 532, 705
Sau96I	GGNCC	4 cut(s)	228, 262, 542, 633
ScrFI	CCNGG	1 cut(s)	154
SduI	GDGCHC	1 cut(s)	450
SetI	ASST	8 cut(s)	128, 201, 291, 370, 412, 438, 476, 629
SfaNI	GCATC	1 cut(s)	199
SinI	GGWCC	2 cut(s)	228, 633
SmiMI	CAYNNNNRTG	2 cut(s)	384, 707
SmlI	CTYRAG	3 cut(s)	49, 292, 405
SmoI	CTYRAG	3 cut(s)	49, 292, 405
Sse9I	AATT	5 cut(s)	9, 20, 41, 243, 516
SsiI	CCGC	3 cut(s)	491, 494, 653
SspMI	CTAG	1 cut(s)	437
StyD4I	CCNGG	1 cut(s)	152
StyI	CCWWGG	1 cut(s)	382
TaaI	ACNGT	1 cut(s)	716
TaiI	ACGT	3 cut(s)	128, 201, 476
TaqI	TCGA	2 cut(s)	249, 353
TasI	AATT	5 cut(s)	9, 20, 41, 243, 516
TatI	WGTACW	1 cut(s)	711
TauI	GCSGC	1 cut(s)	496
TfiI	GAWTC	2 cut(s)	4, 454
Tru1I	TTAA	3 cut(s)	201, 293, 519
Tru9I	TTAA	3 cut(s)	201, 293, 519
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	6 cut(s)	415, 558, 655, 666, 669, 672
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	5 cut(s)	75, 237, 412, 440, 567
Vha464I	CTTAAG	1 cut(s)	292
VpaK11BI	GGWCC	2 cut(s)	228, 633
XapI	RAATTY	1 cut(s)	20
XmnI	GAANNNNTTC	1 cut(s)	626
XspI	CTAG	1 cut(s)	437
ZraI	GACGTC	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.