Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0004225

Physical Location & Seq

Genomic Coordinates Forward (+)

12478862 .. 12480248

Gene Structure 1387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG059700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGCCCGAGGAGTCCAGAGATGCAGTTTGCCTTGGATCCTCTCACGGTTGGCTAGTTTTGTTGAACAACCAGCTCGAGTTTATGATCTCAACTCCATTCTTATCTGGAATTCAACTTCCCCTGCCACCACTGAAGACTTTTCCAGATATACTTGGCATTACATATCAGAAAGGTACTACTTATGCATACAATATTGTTGATCACTTCACATTAGCATGCAAAACTTCTGATGAGGCTAAAAGGCCTCCCAGTGATAAATTCTTGGATTTCACTTCTGTGAAGCATTTGGCAAGCAAGATGAGAGCCAAGGCTGGGTTGTCTTCACGTCCGACATGCAGCAACAAAGACAAGATTGGAGTCATGGTGATGTACATCTTTGAAGACAGAGATAATTGCAGGTACAACAGCCTTGCTTTCTGCACAACATCTGATTATAAGTGGACAAAACTTGAGGAGCGCAGATGGTACAAAGAAATCATGGGGTGTGGTAATGAGTTCTATGTCTTAAAGGAAGACTATAGTGTTGATGTCTGGGATTTCGGCACATCTTCCATTCCCATGAAGAAGATGGAAATCAAACCTGTTGCATGTGCAATACTTGCCGAAGTAAGAGGAAGGTCTCCCAAGGTTTACATGATCAAAACAGTGGGGACTGGTCTAATGCTGGTAGTGGAATATGTTCATATCTCACAAATTCAATTCCGTGTTTATAAGCTGGAGGGGACAACTCCTGTGTGGCAGGAGGTGCAATCGATTGGGAGTAATGCCTTGGTTTTAGGTTCGAACAATTCCATAGTAATGTCATTCCATGATTCCCTACGCTGTGATGATGATTCGATTTACTATGCGCAGAAGTCAAGACCTGAACCCTATATATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

293

Amino Acids

33.41

Weight (kDa)

7.53

Isoelectric Point (pI)

52.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	2 - 283	2.4e-33	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004225)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15921 FvH4_4g04632 FvH4_4g05202 FvH4_4g05500 FvH4_7g24700
prunus_persica	Prupe.1G052900_v2.0.a1 Prupe.1G053000_v2.0.a1
rosa_laevigata	RLG00000032962
rosa_multiflora	Rmu_sc0002021.1_g000018 Rmu_sc0004598.1_g000005 Rmu_sc0010817.1_g000006 Rmu_sc0021895.1_g000002 Rmu_sc0021895.1_g000003
rosa_roxburghii	Rroxscaffold_1G00052700 Rroxscaffold_4G00286440
rosa_rugosa	Rorug03G0352300 Rorug03G0357300
rosa_samantha	Rh1AG366800 Rh1BG330300 Rh1CG343200 Rh1CG344600 Rh1DG361800 Rh4AG059700 Rh4BG058300 Rh4CG064000 Rh4DG054900 Rh4DG061400 Rh4DG061600 Rh5BG185200 Rh5CG205200
rosa_wichuraiana	Rw1G032280 Rw4G004780 Rw5G017140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	435, 711
Acc16I	TGCGCA	1 cut(s)	849
Acc36I	ACCTGC	1 cut(s)	387
AclWI	GGATC	2 cut(s)	30, 43
AcsI	RAATTY	3 cut(s)	108, 257, 693
AcuI	CTGAAG	1 cut(s)	152
AfaI	GTAC	4 cut(s)	175, 371, 401, 467
AfiI	CCNNNNNNNGG	2 cut(s)	312, 876
AgsI	TTSAA	4 cut(s)	64, 113, 380, 698
AjiI	CACGTC	1 cut(s)	326
AleI	CACNNNNGTG	1 cut(s)	275
AluBI	AGCT	2 cut(s)	73, 715
AluI	AGCT	2 cut(s)	73, 715
Alw26I	GTCTC	1 cut(s)	624
AlwI	GGATC	2 cut(s)	30, 43
Ama87I	CYCGRG	2 cut(s)	5, 74
AoxI	GGCC	1 cut(s)	242
ApeKI	GCWGC	1 cut(s)	336
ApoI	RAATTY	3 cut(s)	108, 257, 693
Asp700I	GAANNNNTTC	1 cut(s)	678
AspLEI	GCGC	2 cut(s)	459, 850
AsuHPI	GGTGA	1 cut(s)	376
AsuII	TTCGAA	1 cut(s)	782
AvaI	CYCGRG	2 cut(s)	5, 74
BamHI	GGATCC	1 cut(s)	35
BbsI	GAAGAC	4 cut(s)	140, 312, 387, 519
BbvI	GCAGC	1 cut(s)	348
BccI	CCATC	2 cut(s)	456, 562
BclI	TGATCA	2 cut(s)	199, 636
BcoDI	GTCTC	1 cut(s)	624
BfaI	CTAG	1 cut(s)	53
BfmI	CTRYAG	1 cut(s)	517
BfuAI	ACCTGC	1 cut(s)	387
BisI	GCNGC	1 cut(s)	337
BlsI	GCNGC	1 cut(s)	338
BmeT110I	CYCGRG	2 cut(s)	5, 74
BmgBI	CACGTC	1 cut(s)	326
BmiI	GGNNCC	1 cut(s)	37
BmrI	ACTGGG	1 cut(s)	243
BmsI	GCATC	1 cut(s)	10
BmuI	ACTGGG	1 cut(s)	243
BpiI	GAAGAC	4 cut(s)	140, 312, 387, 519
BpmI	CTGGAG	1 cut(s)	737
Bpu14I	TTCGAA	1 cut(s)	782
BpuEI	CTTGAG	1 cut(s)	470
Bsa29I	ATCGAT	1 cut(s)	752
BsaBI	GATNNNNATC	2 cut(s)	371, 572
BsaI	GGTCTC	1 cut(s)	624
BsaJI	CCNNGG	5 cut(s)	6, 31, 306, 624, 768
BsaXI	ACNNNNNCTCC	2 cut(s)	348, 378
Bsc4I	CCNNNNNNNGG	2 cut(s)	312, 876
Bse1I	ACTGG	2 cut(s)	249, 658
Bse8I	GATNNNNATC	2 cut(s)	371, 572
BseCI	ATCGAT	1 cut(s)	752
BseDI	CCNNGG	5 cut(s)	6, 31, 306, 624, 768
BseJI	GATNNNNATC	2 cut(s)	371, 572
BseLI	CCNNNNNNNGG	2 cut(s)	312, 876
BseNI	ACTGG	2 cut(s)	249, 658
BseRI	GAGGAG	2 cut(s)	23, 467
BseXI	GCAGC	1 cut(s)	348
BseYI	CCCAGC	1 cut(s)	311
BsgI	GTGCAG	1 cut(s)	403
BshFI	GGCC	1 cut(s)	244
BshVI	ATCGAT	1 cut(s)	752
BsiHKCI	CYCGRG	2 cut(s)	5, 74
BslFI	GGGAC	2 cut(s)	664, 736
BslI	CCNNNNNNNGG	2 cut(s)	312, 876
BsmAI	GTCTC	1 cut(s)	624
BsmFI	GGGAC	2 cut(s)	664, 736
BsnI	GGCC	1 cut(s)	244
Bso31I	GGTCTC	1 cut(s)	624
BsoBI	CYCGRG	2 cut(s)	5, 74
Bsp119I	TTCGAA	1 cut(s)	782
Bsp1407I	TGTACA	1 cut(s)	369
Bsp143I	GATC	4 cut(s)	35, 84, 199, 636
BspANI	GGCC	1 cut(s)	244
BspDI	ATCGAT	1 cut(s)	752
BspLI	GGNNCC	1 cut(s)	37
BspMI	ACCTGC	1 cut(s)	387
BspPI	GGATC	2 cut(s)	30, 43
BspT104I	TTCGAA	1 cut(s)	782
BspTNI	GGTCTC	1 cut(s)	624
BsrGI	TGTACA	1 cut(s)	369
BsrI	ACTGG	2 cut(s)	249, 658
BssECI	CCNNGG	5 cut(s)	6, 31, 306, 624, 768
BssMI	GATC	4 cut(s)	35, 84, 199, 636
BssT1I	CCWWGG	4 cut(s)	31, 306, 624, 768
Bst4CI	ACNGT	2 cut(s)	47, 646
BstAPI	GCANNNNNTGC	2 cut(s)	599, 745
BstAUI	TGTACA	1 cut(s)	369
BstBI	TTCGAA	1 cut(s)	782
BstC8I	GCNNGC	2 cut(s)	217, 292
BstHHI	GCGC	2 cut(s)	459, 850
BstKTI	GATC	4 cut(s)	38, 87, 202, 639
BstMAI	GTCTC	1 cut(s)	624
BstMBI	GATC	4 cut(s)	35, 84, 199, 636
BstMWI	GCNNNNNNNGC	2 cut(s)	599, 745
BstNSI	RCATGY	3 cut(s)	219, 336, 591
BstSFI	CTRYAG	1 cut(s)	517
BstV1I	GCAGC	1 cut(s)	348
BstV2I	GAAGAC	4 cut(s)	140, 312, 387, 519
BstX2I	RGATCY	1 cut(s)	35
BstYI	RGATCY	1 cut(s)	35
Bsu15I	ATCGAT	1 cut(s)	752
BsuRI	GGCC	1 cut(s)	244
BsuTUI	ATCGAT	1 cut(s)	752
BtrI	CACGTC	1 cut(s)	326
BtsIMutI	CAGTG	3 cut(s)	128, 256, 651
BveI	ACCTGC	1 cut(s)	387
Cac8I	GCNNGC	2 cut(s)	217, 292
CfoI	GCGC	2 cut(s)	459, 850
ClaI	ATCGAT	1 cut(s)	752
Csp6I	GTAC	4 cut(s)	174, 370, 400, 466
CviAII	CATG	8 cut(s)	216, 333, 361, 478, 559, 588, 634, 809
CviJI	RGCY	8 cut(s)	52, 73, 236, 244, 305, 311, 408, 715
CviKI_1	RGCY	8 cut(s)	52, 73, 236, 244, 305, 311, 408, 715
CviQI	GTAC	4 cut(s)	174, 370, 400, 466
DpnI	GATC	4 cut(s)	37, 86, 201, 638
DpnII	GATC	4 cut(s)	35, 84, 199, 636
Eco130I	CCWWGG	4 cut(s)	31, 306, 624, 768
Eco147I	AGGCCT	1 cut(s)	244
Eco31I	GGTCTC	1 cut(s)	624
Eco57I	CTGAAG	1 cut(s)	152
Eco88I	CYCGRG	2 cut(s)	5, 74
EcoRI	GAATTC	1 cut(s)	108
EcoT14I	CCWWGG	4 cut(s)	31, 306, 624, 768
EcoT22I	ATGCAT	1 cut(s)	187
ErhI	CCWWGG	4 cut(s)	31, 306, 624, 768
FaeI	CATG	8 cut(s)	219, 336, 364, 481, 562, 591, 637, 812
FaqI	GGGAC	2 cut(s)	664, 736
FatI	CATG	8 cut(s)	215, 332, 360, 477, 558, 587, 633, 808
FbaI	TGATCA	2 cut(s)	199, 636
Fnu4HI	GCNGC	1 cut(s)	337
Fsp4HI	GCNGC	1 cut(s)	337
FspBI	CTAG	1 cut(s)	53
FspI	TGCGCA	1 cut(s)	849
GlaI	GCGC	2 cut(s)	458, 849
GluI	GCNGC	1 cut(s)	337
GsaI	CCCAGC	1 cut(s)	315
GsuI	CTGGAG	1 cut(s)	737
HaeIII	GGCC	1 cut(s)	244
HhaI	GCGC	2 cut(s)	459, 850
Hin1II	CATG	8 cut(s)	219, 336, 364, 481, 562, 591, 637, 812
Hin6I	GCGC	2 cut(s)	457, 848
HinP1I	GCGC	2 cut(s)	457, 848
HinfI	GANTC	4 cut(s)	11, 357, 812, 833
HphI	GGTGA	1 cut(s)	376
Hpy166II	GTNNAC	2 cut(s)	441, 631
Hpy188I	TCNGA	4 cut(s)	168, 229, 330, 430
Hpy188III	TCNNGA	4 cut(s)	15, 105, 143, 858
Hpy8I	GTNNAC	2 cut(s)	441, 631
HpyAV	CCTTC	1 cut(s)	609
HpyCH4III	ACNGT	2 cut(s)	47, 646
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	9 cut(s)	23, 185, 219, 336, 396, 420, 587, 593, 748
HpyF10VI	GCNNNNNNNGC	2 cut(s)	599, 745
HpySE526I	ACGT	1 cut(s)	325
Hsp92II	CATG	8 cut(s)	219, 336, 364, 481, 562, 591, 637, 812
HspAI	GCGC	2 cut(s)	457, 848
Ksp22I	TGATCA	2 cut(s)	199, 636
Kzo9I	GATC	4 cut(s)	35, 84, 199, 636
LmnI	GCTCC	1 cut(s)	454
Lsp1109I	GCAGC	1 cut(s)	348
LweI	GCATC	1 cut(s)	10
MaeI	CTAG	1 cut(s)	53
MaeII	ACGT	1 cut(s)	325
MalI	GATC	4 cut(s)	37, 86, 201, 638
MboI	GATC	4 cut(s)	35, 84, 199, 636
MboII	GAAGA	7 cut(s)	145, 312, 392, 524, 540, 574, 577
MflI	RGATCY	1 cut(s)	35
MluCI	AATT	6 cut(s)	108, 257, 391, 693, 698, 787
MlyI	GAGTC	2 cut(s)	20, 366
MmeI	TCCRAC	1 cut(s)	353
MnlI	CCTC	7 cut(s)	49, 226, 255, 445, 605, 712, 736
Mph1103I	ATGCAT	1 cut(s)	187
MroXI	GAANNNNTTC	1 cut(s)	678
MseI	TTAA	1 cut(s)	506
MslI	CAYNNNNRTG	5 cut(s)	214, 275, 365, 557, 797
MwoI	GCNNNNNNNGC	2 cut(s)	599, 745
NdeII	GATC	4 cut(s)	35, 84, 199, 636
NlaIII	CATG	8 cut(s)	219, 336, 364, 481, 562, 591, 637, 812
NlaIV	GGNNCC	1 cut(s)	37
NsbI	TGCGCA	1 cut(s)	849
NsiI	ATGCAT	1 cut(s)	187
NspI	RCATGY	3 cut(s)	219, 336, 591
NspV	TTCGAA	1 cut(s)	782
OliI	CACNNNNGTG	1 cut(s)	275
PaeI	GCATGC	1 cut(s)	219
PaeR7I	CTCGAG	1 cut(s)	74
PceI	AGGCCT	1 cut(s)	244
PdmI	GAANNNNTTC	1 cut(s)	678
PfeI	GAWTC	2 cut(s)	812, 833
PkrI	GCNGC	1 cut(s)	338
PleI	GAGTC	2 cut(s)	19, 365
PpsI	GAGTC	2 cut(s)	19, 365
PsiI	TTATAA	2 cut(s)	435, 711
PspFI	CCCAGC	1 cut(s)	311
PspN4I	GGNNCC	1 cut(s)	37
PspXI	VCTCGAGB	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	35
RsaI	GTAC	4 cut(s)	175, 371, 401, 467
RsaNI	GTAC	4 cut(s)	174, 370, 400, 466
RseI	CAYNNNNRTG	5 cut(s)	214, 275, 365, 557, 797
SaqAI	TTAA	1 cut(s)	506
SatI	GCNGC	1 cut(s)	337
Sau3AI	GATC	4 cut(s)	35, 84, 199, 636
SchI	GAGTC	2 cut(s)	20, 366
SfaNI	GCATC	1 cut(s)	10
SfcI	CTRYAG	1 cut(s)	517
Sfr274I	CTCGAG	1 cut(s)	74
SfuI	TTCGAA	1 cut(s)	782
SlaI	CTCGAG	1 cut(s)	74
SmiMI	CAYNNNNRTG	5 cut(s)	214, 275, 365, 557, 797
SmlI	CTYRAG	2 cut(s)	74, 449
SmoI	CTYRAG	2 cut(s)	74, 449
SphI	GCATGC	1 cut(s)	219
Sse9I	AATT	6 cut(s)	108, 257, 391, 693, 698, 787
SseBI	AGGCCT	1 cut(s)	244
SspI	AATATT	1 cut(s)	193
SspMI	CTAG	1 cut(s)	53
StuI	AGGCCT	1 cut(s)	244
StyI	CCWWGG	4 cut(s)	31, 306, 624, 768
TaaI	ACNGT	2 cut(s)	47, 646
TaiI	ACGT	1 cut(s)	328
TaqI	TCGA	4 cut(s)	75, 752, 782, 836
TasI	AATT	6 cut(s)	108, 257, 391, 693, 698, 787
TatI	WGTACW	1 cut(s)	369
TfiI	GAWTC	2 cut(s)	812, 833
Tru1I	TTAA	1 cut(s)	506
Tru9I	TTAA	1 cut(s)	506
TscAI	CASTG	3 cut(s)	135, 256, 651
TseI	GCWGC	1 cut(s)	336
TspDTI	ATGAA	2 cut(s)	575, 671
TspGWI	ACGGA	1 cut(s)	692
TspRI	CASTG	3 cut(s)	135, 256, 651
XapI	RAATTY	3 cut(s)	108, 257, 693
XceI	RCATGY	3 cut(s)	219, 336, 591
XcmI	CCANNNNNNNNNTGG	1 cut(s)	565
XhoI	CTCGAG	1 cut(s)	74
XmnI	GAANNNNTTC	1 cut(s)	678
XspI	CTAG	1 cut(s)	53
Zsp2I	ATGCAT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.