Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021895.1

Orthogroup ID

OG0004225

Physical Location & Seq

Genomic Coordinates Forward (+)

5713 .. 6204

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021895.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atgtacagtgtcaaacgctttagtgcagggccatacagcattgcattttgtacaacagatgcaaatggtaagtggacaaagctggatgagcgtgaatggtacttaaataattgttgccatcatgatcaactctatgcattactgcaagacatcagtacggttgaagtatgggatttctcgacttcctttcccattaaaaagatggaaatccgagcggatcatgcacttggggaacgaataaactatcatcaaacatggccgcaaccatgctacatagccaaaacagcagaagatctactcctcgtatcgagtttattcagaaaaaattgtgtttttaagctggattacaattccgatggtagctacagatggatagagacagagtccattggcaagggtgaattgtatttgaatatggaccagtcactactaacctcaacagccgatgatgcttcagaacgcaacaggaactcaatttacttcacaaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

163

Amino Acids

19.0

Weight (kDa)

5.33

Isoelectric Point (pI)

32.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004225)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15921 FvH4_4g04632 FvH4_4g05202 FvH4_4g05500 FvH4_7g24700
prunus_persica	Prupe.1G052900_v2.0.a1 Prupe.1G053000_v2.0.a1
rosa_laevigata	RLG00000032962
rosa_multiflora	Rmu_sc0002021.1_g000018 Rmu_sc0004598.1_g000005 Rmu_sc0010817.1_g000006 Rmu_sc0021895.1_g000002 Rmu_sc0021895.1_g000003
rosa_roxburghii	Rroxscaffold_1G00052700 Rroxscaffold_4G00286440
rosa_rugosa	Rorug03G0352300 Rorug03G0357300
rosa_samantha	Rh1AG366800 Rh1BG330300 Rh1CG343200 Rh1CG344600 Rh1DG361800 Rh4AG059700 Rh4BG058300 Rh4CG064000 Rh4DG054900 Rh4DG061400 Rh4DG061600 Rh5BG185200 Rh5CG205200
rosa_wichuraiana	Rw1G032280 Rw4G004780 Rw5G017140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	215
AciI	CCGC	2 cut(s)	215, 260
AclWI	GGATC	1 cut(s)	225
AcoI	YGGCCR	1 cut(s)	257
AcuI	CTGAAG	1 cut(s)	438
AfaI	GTAC	4 cut(s)	5, 52, 101, 157
AgsI	TTSAA	2 cut(s)	164, 412
AluBI	AGCT	3 cut(s)	82, 340, 363
AluI	AGCT	3 cut(s)	82, 340, 363
Alw26I	GTCTC	1 cut(s)	371
AlwI	GGATC	1 cut(s)	225
AoxI	GGCC	2 cut(s)	29, 257
AspS9I	GGNCC	2 cut(s)	29, 418
AsuHPI	GGTGA	1 cut(s)	410
AvaII	GGWCC	1 cut(s)	418
BccI	CCATC	4 cut(s)	126, 196, 350, 363
BclI	TGATCA	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	371
BfaI	CTAG	1 cut(s)	490
BfmI	CTRYAG	1 cut(s)	364
BglII	AGATCT	1 cut(s)	292
BisI	GCNGC	1 cut(s)	260
BlsI	GCNGC	1 cut(s)	261
Bme18I	GGWCC	1 cut(s)	418
BmgT120I	GGNCC	2 cut(s)	29, 418
BmsI	GCATC	2 cut(s)	49, 439
BsaBI	GATNNNNATC	1 cut(s)	206
Bse1I	ACTGG	1 cut(s)	421
Bse3DI	GCAATG	1 cut(s)	39
Bse8I	GATNNNNATC	1 cut(s)	206
BseGI	GGATG	1 cut(s)	91
BseJI	GATNNNNATC	1 cut(s)	206
BseMI	GCAATG	1 cut(s)	39
BseNI	ACTGG	1 cut(s)	421
BseRI	GAGGAG	1 cut(s)	290
BsgI	GTGCAG	1 cut(s)	45
BshFI	GGCC	2 cut(s)	31, 259
BsmAI	GTCTC	1 cut(s)	371
BsnI	GGCC	2 cut(s)	31, 259
Bsp1407I	TGTACA	2 cut(s)	3, 50
Bsp143I	GATC	3 cut(s)	124, 217, 292
BspACI	CCGC	2 cut(s)	215, 260
BspANI	GGCC	2 cut(s)	31, 259
BspHI	TCATGA	1 cut(s)	121
BspPI	GGATC	1 cut(s)	225
BsrBI	CCGCTC	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	39
BsrGI	TGTACA	2 cut(s)	3, 50
BsrI	ACTGG	1 cut(s)	421
BssMI	GATC	3 cut(s)	124, 217, 292
Bst4CI	ACNGT	2 cut(s)	8, 160
BstAUI	TGTACA	2 cut(s)	3, 50
BstF5I	GGATG	1 cut(s)	91
BstKTI	GATC	3 cut(s)	127, 220, 295
BstMAI	GTCTC	1 cut(s)	371
BstMBI	GATC	3 cut(s)	124, 217, 292
BstMWI	GCNNNNNNNGC	4 cut(s)	88, 221, 284, 449
BstSFI	CTRYAG	1 cut(s)	364
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BsuRI	GGCC	2 cut(s)	31, 259
BtsCI	GGATG	1 cut(s)	91
BtsIMutI	CAGTG	1 cut(s)	13
CciI	TCATGA	1 cut(s)	121
Cfr13I	GGNCC	2 cut(s)	29, 418
Csp6I	GTAC	4 cut(s)	4, 51, 100, 156
CviAII	CATG	4 cut(s)	122, 221, 255, 267
CviJI	RGCY	7 cut(s)	31, 82, 259, 278, 340, 363, 443
CviKI_1	RGCY	7 cut(s)	31, 82, 259, 278, 340, 363, 443
CviQI	GTAC	4 cut(s)	4, 51, 100, 156
DpnI	GATC	3 cut(s)	126, 219, 294
DpnII	GATC	3 cut(s)	124, 217, 292
EaeI	YGGCCR	1 cut(s)	257
Eco47I	GGWCC	1 cut(s)	418
Eco57I	CTGAAG	1 cut(s)	438
EcoT22I	ATGCAT	1 cut(s)	139
FaeI	CATG	4 cut(s)	125, 224, 258, 270
FaiI	YATR	9 cut(s)	34, 123, 135, 169, 222, 256, 268, 275, 416
FatI	CATG	4 cut(s)	121, 220, 254, 266
FbaI	TGATCA	1 cut(s)	124
Fnu4HI	GCNGC	1 cut(s)	260
FokI	GGATG	1 cut(s)	98
Fsp4HI	GCNGC	1 cut(s)	260
FspBI	CTAG	1 cut(s)	490
GluI	GCNGC	1 cut(s)	260
HaeIII	GGCC	2 cut(s)	31, 259
Hin1II	CATG	4 cut(s)	125, 224, 258, 270
HinfI	GANTC	1 cut(s)	383
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	1 cut(s)	75
Hpy188I	TCNGA	4 cut(s)	212, 320, 355, 457
Hpy188III	TCNNGA	2 cut(s)	122, 178
Hpy8I	GTNNAC	1 cut(s)	75
HpyCH4III	ACNGT	2 cut(s)	8, 160
HpyCH4V	TGCA	6 cut(s)	26, 44, 62, 137, 145, 224
HpyF10VI	GCNNNNNNNGC	4 cut(s)	88, 221, 284, 449
Hsp92II	CATG	4 cut(s)	125, 224, 258, 270
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	3 cut(s)	124, 217, 292
LpnPI	CCDG	5 cut(s)	12, 68, 326, 434, 451
LweI	GCATC	2 cut(s)	49, 439
MaeI	CTAG	1 cut(s)	490
MaeIII	GTNAC	1 cut(s)	423
MalI	GATC	3 cut(s)	126, 219, 294
MbiI	CCGCTC	1 cut(s)	215
MboI	GATC	3 cut(s)	124, 217, 292
MboII	GAAGA	1 cut(s)	302
MflI	RGATCY	1 cut(s)	292
MluCI	AATT	5 cut(s)	109, 325, 349, 401, 474
MlyI	GAGTC	1 cut(s)	392
MnlI	CCTC	2 cut(s)	311, 445
Mph1103I	ATGCAT	1 cut(s)	139
MseI	TTAA	3 cut(s)	104, 195, 336
MwoI	GCNNNNNNNGC	4 cut(s)	88, 221, 284, 449
NdeII	GATC	3 cut(s)	124, 217, 292
NlaIII	CATG	4 cut(s)	125, 224, 258, 270
NmuCI	GTSAC	1 cut(s)	423
NsiI	ATGCAT	1 cut(s)	139
PagI	TCATGA	1 cut(s)	121
PflFI	GACNNNGTC	1 cut(s)	382
PkrI	GCNGC	1 cut(s)	261
PleI	GAGTC	1 cut(s)	391
PpsI	GAGTC	1 cut(s)	391
PspPI	GGNCC	2 cut(s)	29, 418
PsrI	GAACNNNNNNTAC	1 cut(s)	461
PsuI	RGATCY	1 cut(s)	292
PsyI	GACNNNGTC	1 cut(s)	382
RsaI	GTAC	4 cut(s)	5, 52, 101, 157
RsaNI	GTAC	4 cut(s)	4, 51, 100, 156
SaqAI	TTAA	3 cut(s)	104, 195, 336
SatI	GCNGC	1 cut(s)	260
Sau3AI	GATC	3 cut(s)	124, 217, 292
Sau96I	GGNCC	2 cut(s)	29, 418
SchI	GAGTC	1 cut(s)	392
SetI	ASST	4 cut(s)	84, 342, 365, 437
SfaNI	GCATC	2 cut(s)	49, 439
SfcI	CTRYAG	1 cut(s)	364
SinI	GGWCC	1 cut(s)	418
Sse9I	AATT	5 cut(s)	109, 325, 349, 401, 474
SsiI	CCGC	2 cut(s)	215, 260
SspMI	CTAG	1 cut(s)	490
TaaI	ACNGT	2 cut(s)	8, 160
TaqI	TCGA	2 cut(s)	179, 308
TasI	AATT	5 cut(s)	109, 325, 349, 401, 474
TatI	WGTACW	2 cut(s)	3, 50
TauI	GCSGC	1 cut(s)	262
Tru1I	TTAA	3 cut(s)	104, 195, 336
Tru9I	TTAA	3 cut(s)	104, 195, 336
TscAI	CASTG	1 cut(s)	13
TseFI	GTSAC	1 cut(s)	423
Tsp45I	GTSAC	1 cut(s)	423
TspRI	CASTG	1 cut(s)	13
Tth111I	GACNNNGTC	1 cut(s)	382
VpaK11BI	GGWCC	1 cut(s)	418
XcmI	CCANNNNNNNNNTGG	1 cut(s)	199
XspI	CTAG	1 cut(s)	490
Zsp2I	ATGCAT	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.