Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0004225

Physical Location & Seq

Genomic Coordinates Forward (+)

8518978 .. 8520363

Gene Structure 1386 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG054900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGGCGGACGACGACAACAACTCCAGTAAAATCATAAGAGAAAACATGTCAGGACGGTCCGAATTACCAAAGGAACTCAGTCAACATATCCTATCAACATCCACCCTCAAAACCATCATGCGCTTTAAAGCAGTTTGTCCCTCTTGGTCTGCTGCAGTTGATGAAATCACCAAGTCACCATCCTTCACTTGGCTACCCGAAACAACGTGGCTAGTTCTTCCCCGAGATCTGAATAAAGGTGAGGCCATTGATGGGTCTAGGTTTTACAGTCTTAAAGGAAACTTTTACAACTCGAACATAAACATGCCCGAGGAGTCCAGAGATGCAGTTTGCCTTGGATCCTCTCACGGTTGGCTAGTTTTGTTGAACAACCAGCTCGAGTTTATGATCTCAACTCCATTCTTATCTGGAATTCAACTTCCCCTGCCACCACTCAAGACTTTTCCAGATATACTTGGCATTACATATCAGAAAGGTACTACTTATGCATACAATATTGTTGATCACTTCACATTAGTATGCAAAACTTCTGATGAGGCTAAAAGGCCTCCGAGTGATAAATTCTTGGATTTCACTTCTGTGAAGCATTTGGCGAGCAAGATGGGAGCCAAGGCTGGGCTGTCTTCACGTCCGACATGCAGCAACAAAGACAAGATTGGAGTCATGGTGATGTACATCTTTGAAGACAGAGATAATTGCAGGTACGACAGCCTTGCTTTCTGCACAACATCTGATTATAAGTGGACAAAACTTGAGGAGCGCAGATGGTTCAAAGAAATCATGGGGTGTGGTAATGAGTTCTATGTCTTAAAGGAAGACTATAGTGTTGATGTCTGGGATTTCGGCACATCTTCCATTCCCATGAAGAAGATGGAAATCAAACCTGATGCATGTGCAATACTTGACGAAGTAAGAGGAAGGTCTCCCAAGGTTTACATGATCAAAAGAGTGGGGACTGGTCTAATGCTGGTAGTGGAATATGTTCAGATCTCACAAATTCAATTCCGTGTTTATAAGCTGGAGGAGACAACTCCTGTGTGGCAGGAGGTGCAATCGATTGGGAGTAATGCCTTGGTTTTAGGTTCGAACAATTCCATAGTAATGTCATTCCATGATTCCCTACGCTGTGATGATGATTCGATTTACTATGCGCAGAAGTCAAGACCTGAACCCTATAGTTTACATGTGTTTAGTTTGAAAGACAATTCAAGGAAAAAAGTTTGTGAACTGCCAGTGGACTTTGAACCACTAGCTTTGTCGGGATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

422

Amino Acids

47.9

Weight (kDa)

6.15

Isoelectric Point (pI)

50.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	88 - 397	4.9e-34	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004225)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15921 FvH4_4g04632 FvH4_4g05202 FvH4_4g05500 FvH4_7g24700
prunus_persica	Prupe.1G052900_v2.0.a1 Prupe.1G053000_v2.0.a1
rosa_laevigata	RLG00000032962
rosa_multiflora	Rmu_sc0002021.1_g000018 Rmu_sc0004598.1_g000005 Rmu_sc0010817.1_g000006 Rmu_sc0021895.1_g000002 Rmu_sc0021895.1_g000003
rosa_roxburghii	Rroxscaffold_1G00052700 Rroxscaffold_4G00286440
rosa_rugosa	Rorug03G0352300 Rorug03G0357300
rosa_samantha	Rh1AG366800 Rh1BG330300 Rh1CG343200 Rh1CG344600 Rh1DG361800 Rh4AG059700 Rh4BG058300 Rh4CG064000 Rh4DG054900 Rh4DG061400 Rh4DG061600 Rh5BG185200 Rh5CG205200
rosa_wichuraiana	Rw1G032280 Rw4G004780 Rw5G017140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	738, 1014
Acc16I	TGCGCA	1 cut(s)	1152
Acc36I	ACCTGC	1 cut(s)	690
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	3 cut(s)	333, 346, 1257
AcsI	RAATTY	3 cut(s)	411, 560, 996
AfaI	GTAC	3 cut(s)	478, 674, 704
AfiI	CCNNNNNNNGG	3 cut(s)	189, 252, 615
AflIII	ACRYGT	2 cut(s)	45, 1183
AgsI	TTSAA	8 cut(s)	367, 416, 683, 772, 1001, 1198, 1209, 1244
AjiI	CACGTC	1 cut(s)	629
AleI	CACNNNNGTG	1 cut(s)	578
AluBI	AGCT	3 cut(s)	376, 1018, 1253
AluI	AGCT	3 cut(s)	376, 1018, 1253
Alw26I	GTCTC	2 cut(s)	927, 1019
AlwI	GGATC	3 cut(s)	333, 346, 1257
Ama87I	CYCGRG	3 cut(s)	222, 308, 377
AoxI	GGCC	2 cut(s)	243, 545
ApeKI	GCWGC	2 cut(s)	152, 639
ApoI	RAATTY	3 cut(s)	411, 560, 996
Asp700I	GAANNNNTTC	1 cut(s)	981
AspLEI	GCGC	3 cut(s)	123, 762, 1153
AspS9I	GGNCC	1 cut(s)	57
AsuHPI	GGTGA	4 cut(s)	160, 168, 251, 679
AsuII	TTCGAA	1 cut(s)	1085
AvaI	CYCGRG	3 cut(s)	222, 308, 377
AvaII	GGWCC	1 cut(s)	57
BamHI	GGATCC	2 cut(s)	338, 1262
BbsI	GAAGAC	3 cut(s)	615, 690, 822
BbvI	GCAGC	2 cut(s)	139, 651
BccI	CCATC	6 cut(s)	122, 187, 245, 595, 759, 865
BcgI	CGANNNNNNTGC	2 cut(s)	695, 729
BclI	TGATCA	2 cut(s)	502, 939
BcoDI	GTCTC	2 cut(s)	927, 1019
BfaI	CTAG	4 cut(s)	212, 258, 356, 1250
BfmI	CTRYAG	3 cut(s)	153, 820, 1174
BfuAI	ACCTGC	1 cut(s)	690
BglII	AGATCT	2 cut(s)	226, 987
BisI	GCNGC	2 cut(s)	153, 640
BlsI	GCNGC	2 cut(s)	154, 641
Bme18I	GGWCC	1 cut(s)	57
BmeT110I	CYCGRG	3 cut(s)	222, 308, 377
BmgBI	CACGTC	1 cut(s)	629
BmgT120I	GGNCC	1 cut(s)	57
BmiI	GGNNCC	3 cut(s)	340, 607, 1264
BmsI	GCATC	2 cut(s)	313, 877
BpiI	GAAGAC	3 cut(s)	615, 690, 822
BpmI	CTGGAG	2 cut(s)	7, 1040
Bpu14I	TTCGAA	1 cut(s)	1085
BpuEI	CTTGAG	2 cut(s)	419, 773
Bsa29I	ATCGAT	1 cut(s)	1055
BsaBI	GATNNNNATC	2 cut(s)	674, 875
BsaI	GGTCTC	1 cut(s)	927
BsaJI	CCNNGG	5 cut(s)	309, 334, 609, 927, 1071
BsaXI	ACNNNNNCTCC	4 cut(s)	5, 35, 651, 681
Bsc4I	CCNNNNNNNGG	3 cut(s)	189, 252, 615
Bse1I	ACTGG	3 cut(s)	24, 961, 1232
Bse8I	GATNNNNATC	2 cut(s)	674, 875
BseCI	ATCGAT	1 cut(s)	1055
BseDI	CCNNGG	5 cut(s)	309, 334, 609, 927, 1071
BseGI	GGATG	2 cut(s)	98, 179
BseJI	GATNNNNATC	2 cut(s)	674, 875
BseLI	CCNNNNNNNGG	3 cut(s)	189, 252, 615
BseMII	CTCAG	1 cut(s)	91
BseNI	ACTGG	3 cut(s)	24, 961, 1232
BseRI	GAGGAG	3 cut(s)	326, 770, 1037
BseXI	GCAGC	2 cut(s)	139, 651
BseYI	CCCAGC	1 cut(s)	614
BsgI	GTGCAG	1 cut(s)	706
BshFI	GGCC	2 cut(s)	245, 547
BshVI	ATCGAT	1 cut(s)	1055
BsiHKCI	CYCGRG	3 cut(s)	222, 308, 377
BslFI	GGGAC	2 cut(s)	123, 967
BslI	CCNNNNNNNGG	3 cut(s)	189, 252, 615
BsmAI	GTCTC	2 cut(s)	927, 1019
BsmFI	GGGAC	2 cut(s)	123, 967
BsnI	GGCC	2 cut(s)	245, 547
Bso31I	GGTCTC	1 cut(s)	927
BsoBI	CYCGRG	3 cut(s)	222, 308, 377
Bsp119I	TTCGAA	1 cut(s)	1085
Bsp1407I	TGTACA	1 cut(s)	672
Bsp143I	GATC	7 cut(s)	226, 338, 387, 502, 939, 987, 1262
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	2 cut(s)	245, 547
BspCNI	CTCAG	1 cut(s)	90
BspDI	ATCGAT	1 cut(s)	1055
BspLI	GGNNCC	3 cut(s)	340, 607, 1264
BspMAI	CTGCAG	1 cut(s)	157
BspMI	ACCTGC	1 cut(s)	690
BspPI	GGATC	3 cut(s)	333, 346, 1257
BspT104I	TTCGAA	1 cut(s)	1085
BspTNI	GGTCTC	1 cut(s)	927
BsrGI	TGTACA	1 cut(s)	672
BsrI	ACTGG	3 cut(s)	24, 961, 1232
BssECI	CCNNGG	5 cut(s)	309, 334, 609, 927, 1071
BssMI	GATC	7 cut(s)	226, 338, 387, 502, 939, 987, 1262
BssT1I	CCWWGG	4 cut(s)	334, 609, 927, 1071
Bst4CI	ACNGT	3 cut(s)	57, 269, 350
BstAPI	GCANNNNNTGC	1 cut(s)	1048
BstAUI	TGTACA	1 cut(s)	672
BstBI	TTCGAA	1 cut(s)	1085
BstC8I	GCNNGC	1 cut(s)	595
BstDEI	CTNAG	1 cut(s)	77
BstF5I	GGATG	2 cut(s)	98, 179
BstHHI	GCGC	3 cut(s)	123, 762, 1153
BstKTI	GATC	7 cut(s)	229, 341, 390, 505, 942, 990, 1265
BstMAI	GTCTC	2 cut(s)	927, 1019
BstMBI	GATC	7 cut(s)	226, 338, 387, 502, 939, 987, 1262
BstMWI	GCNNNNNNNGC	1 cut(s)	1048
BstNSI	RCATGY	5 cut(s)	49, 307, 639, 894, 1187
BstSFI	CTRYAG	3 cut(s)	153, 820, 1174
BstV1I	GCAGC	2 cut(s)	139, 651
BstV2I	GAAGAC	3 cut(s)	615, 690, 822
BstX2I	RGATCY	4 cut(s)	226, 338, 987, 1262
BstYI	RGATCY	4 cut(s)	226, 338, 987, 1262
Bsu15I	ATCGAT	1 cut(s)	1055
BsuRI	GGCC	2 cut(s)	245, 547
BsuTUI	ATCGAT	1 cut(s)	1055
BtrI	CACGTC	1 cut(s)	629
BtsCI	GGATG	2 cut(s)	98, 179
BtsIMutI	CAGTG	1 cut(s)	1239
BveI	ACCTGC	1 cut(s)	690
Cac8I	GCNNGC	1 cut(s)	595
CfoI	GCGC	3 cut(s)	123, 762, 1153
Cfr13I	GGNCC	1 cut(s)	57
ClaI	ATCGAT	1 cut(s)	1055
CpoI	CGGWCCG	1 cut(s)	57
Csp6I	GTAC	3 cut(s)	477, 673, 703
CspCI	CAANNNNNGTGG	1 cut(s)	1236
CspI	CGGWCCG	1 cut(s)	57
CviQI	GTAC	3 cut(s)	477, 673, 703
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	7 cut(s)	228, 340, 389, 504, 941, 989, 1264
DpnII	GATC	7 cut(s)	226, 338, 387, 502, 939, 987, 1262
DraI	TTTAAA	1 cut(s)	127
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	4 cut(s)	334, 609, 927, 1071
Eco147I	AGGCCT	1 cut(s)	547
Eco31I	GGTCTC	1 cut(s)	927
Eco47I	GGWCC	1 cut(s)	57
Eco88I	CYCGRG	3 cut(s)	222, 308, 377
EcoRI	GAATTC	1 cut(s)	411
EcoT14I	CCWWGG	4 cut(s)	334, 609, 927, 1071
EcoT22I	ATGCAT	2 cut(s)	490, 892
ErhI	CCWWGG	4 cut(s)	334, 609, 927, 1071
FaqI	GGGAC	2 cut(s)	123, 967
FbaI	TGATCA	2 cut(s)	502, 939
Fnu4HI	GCNGC	2 cut(s)	153, 640
FokI	GGATG	2 cut(s)	85, 166
Fsp4HI	GCNGC	2 cut(s)	153, 640
FspBI	CTAG	4 cut(s)	212, 258, 356, 1250
FspI	TGCGCA	1 cut(s)	1152
GlaI	GCGC	3 cut(s)	122, 761, 1152
GluI	GCNGC	2 cut(s)	153, 640
GsaI	CCCAGC	1 cut(s)	618
GsuI	CTGGAG	2 cut(s)	7, 1040
HaeIII	GGCC	2 cut(s)	245, 547
HhaI	GCGC	3 cut(s)	123, 762, 1153
Hin6I	GCGC	3 cut(s)	121, 760, 1151
HinP1I	GCGC	3 cut(s)	121, 760, 1151
HincII	GTYRAC	1 cut(s)	83
HindII	GTYRAC	1 cut(s)	83
HinfI	GANTC	4 cut(s)	314, 660, 1115, 1136
HphI	GGTGA	4 cut(s)	160, 168, 251, 679
Hpy166II	GTNNAC	6 cut(s)	83, 744, 934, 1181, 1226, 1237
Hpy188I	TCNGA	8 cut(s)	61, 231, 471, 532, 552, 633, 733, 987
Hpy188III	TCNNGA	7 cut(s)	51, 318, 408, 436, 446, 1161, 1260
Hpy8I	GTNNAC	6 cut(s)	83, 744, 934, 1181, 1226, 1237
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	2 cut(s)	193, 912
HpyCH4III	ACNGT	3 cut(s)	57, 269, 350
HpyCH4IV	ACGT	2 cut(s)	206, 628
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1048
HpyF3I	CTNAG	1 cut(s)	77
HpySE526I	ACGT	2 cut(s)	206, 628
HspAI	GCGC	3 cut(s)	121, 760, 1151
Ksp22I	TGATCA	2 cut(s)	502, 939
Kzo9I	GATC	7 cut(s)	226, 338, 387, 502, 939, 987, 1262
LmnI	GCTCC	2 cut(s)	605, 757
Lsp1109I	GCAGC	2 cut(s)	139, 651
LweI	GCATC	2 cut(s)	313, 877
MaeI	CTAG	4 cut(s)	212, 258, 356, 1250
MaeII	ACGT	2 cut(s)	206, 628
MaeIII	GTNAC	1 cut(s)	174
MalI	GATC	7 cut(s)	228, 340, 389, 504, 941, 989, 1264
MboI	GATC	7 cut(s)	226, 338, 387, 502, 939, 987, 1262
MboII	GAAGA	7 cut(s)	209, 615, 695, 827, 843, 877, 880
MflI	RGATCY	4 cut(s)	226, 338, 987, 1262
MluCI	AATT	8 cut(s)	62, 411, 560, 694, 996, 1001, 1090, 1204
MlyI	GAGTC	2 cut(s)	323, 669
MmeI	TCCRAC	1 cut(s)	656
Mph1103I	ATGCAT	2 cut(s)	490, 892
MroXI	GAANNNNTTC	1 cut(s)	981
MseI	TTAA	3 cut(s)	126, 273, 809
MslI	CAYNNNNRTG	6 cut(s)	302, 517, 578, 668, 860, 1100
MwoI	GCNNNNNNNGC	1 cut(s)	1048
NdeII	GATC	7 cut(s)	226, 338, 387, 502, 939, 987, 1262
NlaIV	GGNNCC	3 cut(s)	340, 607, 1264
NmuCI	GTSAC	1 cut(s)	174
NsbI	TGCGCA	1 cut(s)	1152
NsiI	ATGCAT	2 cut(s)	490, 892
NspI	RCATGY	5 cut(s)	49, 307, 639, 894, 1187
NspV	TTCGAA	1 cut(s)	1085
OliI	CACNNNNGTG	1 cut(s)	578
PaeR7I	CTCGAG	1 cut(s)	377
PceI	AGGCCT	1 cut(s)	547
PciI	ACATGT	2 cut(s)	45, 1183
PdmI	GAANNNNTTC	1 cut(s)	981
PfeI	GAWTC	2 cut(s)	1115, 1136
PkrI	GCNGC	2 cut(s)	154, 641
PleI	GAGTC	2 cut(s)	322, 668
PpsI	GAGTC	2 cut(s)	322, 668
PscI	ACATGT	2 cut(s)	45, 1183
PsiI	TTATAA	2 cut(s)	738, 1014
PspFI	CCCAGC	1 cut(s)	614
PspN4I	GGNNCC	3 cut(s)	340, 607, 1264
PspPI	GGNCC	1 cut(s)	57
PspXI	VCTCGAGB	1 cut(s)	377
PstI	CTGCAG	1 cut(s)	157
PsuI	RGATCY	4 cut(s)	226, 338, 987, 1262
RsaI	GTAC	3 cut(s)	478, 674, 704
RsaNI	GTAC	3 cut(s)	477, 673, 703
RseI	CAYNNNNRTG	6 cut(s)	302, 517, 578, 668, 860, 1100
Rsr2I	CGGWCCG	1 cut(s)	57
RsrII	CGGWCCG	1 cut(s)	57
SaqAI	TTAA	3 cut(s)	126, 273, 809
SatI	GCNGC	2 cut(s)	153, 640
Sau3AI	GATC	7 cut(s)	226, 338, 387, 502, 939, 987, 1262
Sau96I	GGNCC	1 cut(s)	57
SchI	GAGTC	2 cut(s)	323, 669
SfaNI	GCATC	2 cut(s)	313, 877
SfcI	CTRYAG	3 cut(s)	153, 820, 1174
Sfr274I	CTCGAG	1 cut(s)	377
SfuI	TTCGAA	1 cut(s)	1085
SinI	GGWCC	1 cut(s)	57
SlaI	CTCGAG	1 cut(s)	377
SmiMI	CAYNNNNRTG	6 cut(s)	302, 517, 578, 668, 860, 1100
SmlI	CTYRAG	3 cut(s)	377, 434, 752
SmoI	CTYRAG	3 cut(s)	377, 434, 752
Sse9I	AATT	8 cut(s)	62, 411, 560, 694, 996, 1001, 1090, 1204
SseBI	AGGCCT	1 cut(s)	547
SsiI	CCGC	1 cut(s)	5
SspI	AATATT	1 cut(s)	496
SspMI	CTAG	4 cut(s)	212, 258, 356, 1250
StuI	AGGCCT	1 cut(s)	547
StyI	CCWWGG	4 cut(s)	334, 609, 927, 1071
TaaI	ACNGT	3 cut(s)	57, 269, 350
TaiI	ACGT	2 cut(s)	209, 631
TaqI	TCGA	5 cut(s)	293, 378, 1055, 1085, 1139
TasI	AATT	8 cut(s)	62, 411, 560, 694, 996, 1001, 1090, 1204
TatI	WGTACW	1 cut(s)	672
TfiI	GAWTC	2 cut(s)	1115, 1136
Tru1I	TTAA	3 cut(s)	126, 273, 809
Tru9I	TTAA	3 cut(s)	126, 273, 809
TscAI	CASTG	1 cut(s)	1239
TseFI	GTSAC	1 cut(s)	174
TseI	GCWGC	2 cut(s)	152, 639
Tsp45I	GTSAC	1 cut(s)	174
TspDTI	ATGAA	2 cut(s)	177, 878
TspGWI	ACGGA	1 cut(s)	995
TspRI	CASTG	1 cut(s)	1239
VpaK11BI	GGWCC	1 cut(s)	57
XapI	RAATTY	3 cut(s)	411, 560, 996
XceI	RCATGY	5 cut(s)	49, 307, 639, 894, 1187
XcmI	CCANNNNNNNNNTGG	2 cut(s)	186, 868
XhoI	CTCGAG	1 cut(s)	377
XmnI	GAANNNNTTC	1 cut(s)	981
XspI	CTAG	4 cut(s)	212, 258, 356, 1250
Zsp2I	ATGCAT	2 cut(s)	490, 892

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.