Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004225

Physical Location & Seq

Genomic Coordinates Forward (+)

21490226 .. 21490861

Gene Structure 636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032962

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGTACTGTATCGTCAATAATCCACGGCTTGCAGGAGAATACAATCTTGCATTCTGCAAGACTAATGGAGATCTTACATGGACAAAACTTGATGAGCACAGAGGAGGTGCAATACAAAGAACTGTCCATCATGAATCATACCGAACTTACATAATCAAGACAGTGGAAGGTCTGCTCCTGGTTTGGAGGACTTGGAGGACTAACAGCCCCGATAGATTCCATGCGTTTAAGCTGGACTATTCTGATGGGAGCTGCAGATGGAGAGAGGTCGAATCGATTGGGAATATTGCATTGATTTTGGATTCGAACGAATCTATATTAATCTCACCCCATAATGCTCCAGGATGGGATAAGAATTCCATCTACTTCGTGCGTAAGTTACCCAACAATGCCCGCGGTTATGGCTTATATGTTTTTAGTTTGCACAAGAAAGGATCCAAAAAGGTTAAGAAAAAACTCCACACTAATTTGCCATATGGTGTTACAACCCCAGTTTTTTTGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

169

Amino Acids

19.33

Weight (kDa)

9.63

Isoelectric Point (pI)

20.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	44 - 137	2.4e-14	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004225)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15921 FvH4_4g04632 FvH4_4g05202 FvH4_4g05500 FvH4_7g24700
prunus_persica	Prupe.1G052900_v2.0.a1 Prupe.1G053000_v2.0.a1
rosa_laevigata	RLG00000032962
rosa_multiflora	Rmu_sc0002021.1_g000018 Rmu_sc0004598.1_g000005 Rmu_sc0010817.1_g000006 Rmu_sc0021895.1_g000002 Rmu_sc0021895.1_g000003
rosa_roxburghii	Rroxscaffold_1G00052700 Rroxscaffold_4G00286440
rosa_rugosa	Rorug03G0352300 Rorug03G0357300
rosa_samantha	Rh1AG366800 Rh1BG330300 Rh1CG343200 Rh1CG344600 Rh1DG361800 Rh4AG059700 Rh4BG058300 Rh4CG064000 Rh4DG054900 Rh4DG061400 Rh4DG061600 Rh5BG185200 Rh5CG205200
rosa_wichuraiana	Rw1G032280 Rw4G004780 Rw5G017140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	396
AciI	CCGC	2 cut(s)	394, 396
AclWI	GGATC	2 cut(s)	429, 442
AcsI	RAATTY	1 cut(s)	355
AfaI	GTAC	1 cut(s)	5
AjnI	CCWGG	2 cut(s)	177, 340
AluBI	AGCT	2 cut(s)	232, 252
AluI	AGCT	2 cut(s)	232, 252
Alw21I	GWGCWC	1 cut(s)	99
AlwI	GGATC	2 cut(s)	429, 442
ApeKI	GCWGC	1 cut(s)	252
ApoI	RAATTY	1 cut(s)	355
AseI	ATTAAT	1 cut(s)	320
AsuHPI	GGTGA	1 cut(s)	318
AsuII	TTCGAA	1 cut(s)	305
BamHI	GGATCC	1 cut(s)	434
Bbv12I	GWGCWC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	239
BccI	CCATC	5 cut(s)	135, 239, 252, 339, 368
BceAI	ACGGC	1 cut(s)	41
BciT130I	CCWGG	2 cut(s)	179, 342
BfmI	CTRYAG	1 cut(s)	253
BglII	AGATCT	1 cut(s)	70
BisI	GCNGC	1 cut(s)	253
BlsI	GCNGC	1 cut(s)	254
Bme1390I	CCNGG	2 cut(s)	179, 342
BmiI	GGNNCC	1 cut(s)	436
BmrFI	CCNGG	2 cut(s)	179, 342
BmrI	ACTGGG	1 cut(s)	485
BmuI	ACTGGG	1 cut(s)	485
BpmI	CTGGAG	1 cut(s)	324
Bpu14I	TTCGAA	1 cut(s)	305
Bsa29I	ATCGAT	1 cut(s)	275
BsaJI	CCNNGG	2 cut(s)	23, 394
Bse1I	ACTGG	1 cut(s)	491
BseBI	CCWGG	2 cut(s)	179, 342
BseCI	ATCGAT	1 cut(s)	275
BseDI	CCNNGG	2 cut(s)	23, 394
BseGI	GGATG	1 cut(s)	350
BseNI	ACTGG	1 cut(s)	491
BseRI	GAGGAG	1 cut(s)	117
BseXI	GCAGC	1 cut(s)	239
Bsh1236I	CGCG	1 cut(s)	396
BshVI	ATCGAT	1 cut(s)	275
BsiHKAI	GWGCWC	1 cut(s)	99
BsmI	GAATGC	1 cut(s)	50
Bsp119I	TTCGAA	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	2 cut(s)	70, 434
BspACI	CCGC	2 cut(s)	394, 396
BspDI	ATCGAT	1 cut(s)	275
BspFNI	CGCG	1 cut(s)	396
BspHI	TCATGA	1 cut(s)	130
BspLI	GGNNCC	1 cut(s)	436
BspMAI	CTGCAG	1 cut(s)	257
BspPI	GGATC	2 cut(s)	429, 442
BspT104I	TTCGAA	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	491
BssECI	CCNNGG	2 cut(s)	23, 394
BssMI	GATC	2 cut(s)	70, 434
Bst2UI	CCWGG	2 cut(s)	179, 342
Bst4CI	ACNGT	3 cut(s)	8, 124, 163
BstBI	TTCGAA	1 cut(s)	305
BstC8I	GCNNGC	2 cut(s)	30, 394
BstDSI	CCRYGG	2 cut(s)	23, 394
BstF5I	GGATG	1 cut(s)	350
BstFNI	CGCG	1 cut(s)	396
BstKTI	GATC	2 cut(s)	73, 437
BstMBI	GATC	2 cut(s)	70, 434
BstMWI	GCNNNNNNNGC	1 cut(s)	402
BstNI	CCWGG	2 cut(s)	179, 342
BstSCI	CCNGG	2 cut(s)	177, 340
BstSFI	CTRYAG	1 cut(s)	253
BstUI	CGCG	1 cut(s)	396
BstV1I	GCAGC	1 cut(s)	239
BstX2I	RGATCY	2 cut(s)	70, 434
BstYI	RGATCY	2 cut(s)	70, 434
Bsu15I	ATCGAT	1 cut(s)	275
BsuTUI	ATCGAT	1 cut(s)	275
BtgI	CCRYGG	2 cut(s)	23, 394
BtsCI	GGATG	1 cut(s)	350
BtsIMutI	CAGTG	1 cut(s)	168
Cac8I	GCNNGC	2 cut(s)	30, 394
CciI	TCATGA	1 cut(s)	130
Cfr42I	CCGCGG	1 cut(s)	397
ClaI	ATCGAT	1 cut(s)	275
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	3 cut(s)	78, 131, 221
CviJI	RGCY	5 cut(s)	28, 207, 232, 252, 405
CviKI_1	RGCY	5 cut(s)	28, 207, 232, 252, 405
CviQI	GTAC	1 cut(s)	4
DpnI	GATC	2 cut(s)	72, 436
DpnII	GATC	2 cut(s)	70, 434
EcoRI	GAATTC	1 cut(s)	355
EcoRII	CCWGG	2 cut(s)	177, 340
FaeI	CATG	3 cut(s)	81, 134, 224
FatI	CATG	3 cut(s)	77, 130, 220
FauI	CCCGC	1 cut(s)	401
FauNDI	CATATG	1 cut(s)	475
Fnu4HI	GCNGC	1 cut(s)	253
FokI	GGATG	1 cut(s)	357
Fsp4HI	GCNGC	1 cut(s)	253
GluI	GCNGC	1 cut(s)	253
GsuI	CTGGAG	1 cut(s)	324
Hin1II	CATG	3 cut(s)	81, 134, 224
HinfI	GANTC	5 cut(s)	134, 216, 272, 302, 311
HphI	GGTGA	1 cut(s)	318
Hpy188I	TCNGA	1 cut(s)	244
Hpy188III	TCNNGA	2 cut(s)	131, 157
HpyAV	CCTTC	1 cut(s)	161
HpyCH4III	ACNGT	3 cut(s)	8, 124, 163
HpyCH4V	TGCA	7 cut(s)	32, 50, 57, 110, 255, 290, 424
HpyF10VI	GCNNNNNNNGC	1 cut(s)	402
Hsp92II	CATG	3 cut(s)	81, 134, 224
KspI	CCGCGG	1 cut(s)	397
Kzo9I	GATC	2 cut(s)	70, 434
LmnI	GCTCC	3 cut(s)	180, 249, 343
LpnPI	CCDG	6 cut(s)	18, 164, 191, 218, 327, 354
Lsp1109I	GCAGC	1 cut(s)	239
MaeIII	GTNAC	2 cut(s)	378, 481
MalI	GATC	2 cut(s)	72, 436
MboI	GATC	2 cut(s)	70, 434
MflI	RGATCY	2 cut(s)	70, 434
MhlI	GDGCHC	1 cut(s)	99
MluCI	AATT	2 cut(s)	355, 466
MnlI	CCTC	5 cut(s)	95, 98, 180, 189, 259
MseI	TTAA	3 cut(s)	228, 320, 447
MspA1I	CMGCKG	1 cut(s)	396
MspR9I	CCNGG	2 cut(s)	179, 342
Mva1269I	GAATGC	1 cut(s)	50
MvaI	CCWGG	2 cut(s)	179, 342
MvnI	CGCG	1 cut(s)	396
MwoI	GCNNNNNNNGC	1 cut(s)	402
NdeI	CATATG	1 cut(s)	475
NdeII	GATC	2 cut(s)	70, 434
NlaIII	CATG	3 cut(s)	81, 134, 224
NlaIV	GGNNCC	1 cut(s)	436
NspV	TTCGAA	1 cut(s)	305
PagI	TCATGA	1 cut(s)	130
PctI	GAATGC	1 cut(s)	50
PfeI	GAWTC	5 cut(s)	134, 216, 272, 302, 311
PfoI	TCCNGGA	1 cut(s)	340
PkrI	GCNGC	1 cut(s)	254
PshBI	ATTAAT	1 cut(s)	320
Psp6I	CCWGG	2 cut(s)	177, 340
PspGI	CCWGG	2 cut(s)	177, 340
PspN4I	GGNNCC	1 cut(s)	436
PstI	CTGCAG	1 cut(s)	257
PsuI	RGATCY	2 cut(s)	70, 434
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SacII	CCGCGG	1 cut(s)	397
SaqAI	TTAA	3 cut(s)	228, 320, 447
SatI	GCNGC	1 cut(s)	253
Sau3AI	GATC	2 cut(s)	70, 434
ScrFI	CCNGG	2 cut(s)	179, 342
SduI	GDGCHC	1 cut(s)	99
SetI	ASST	6 cut(s)	109, 172, 234, 254, 270, 447
SfcI	CTRYAG	1 cut(s)	253
Sfr303I	CCGCGG	1 cut(s)	397
SfuI	TTCGAA	1 cut(s)	305
SgrBI	CCGCGG	1 cut(s)	397
Sse9I	AATT	2 cut(s)	355, 466
SsiI	CCGC	2 cut(s)	394, 396
SspI	AATATT	1 cut(s)	286
StyD4I	CCNGG	2 cut(s)	177, 340
TaaI	ACNGT	3 cut(s)	8, 124, 163
TaqI	TCGA	3 cut(s)	270, 275, 305
TasI	AATT	2 cut(s)	355, 466
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	5 cut(s)	134, 216, 272, 302, 311
Tru1I	TTAA	3 cut(s)	228, 320, 447
Tru9I	TTAA	3 cut(s)	228, 320, 447
TscAI	CASTG	1 cut(s)	168
TseI	GCWGC	1 cut(s)	252
TspDTI	ATGAA	1 cut(s)	147
TspRI	CASTG	1 cut(s)	168
VspI	ATTAAT	1 cut(s)	320
XapI	RAATTY	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.