Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0004225

Physical Location & Seq

Genomic Coordinates Forward (+)

46742154 .. 46743294

Gene Structure 1141 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG330300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGCGGACTGTAGAAAACCAAATTGGCCAGAACTTCCCATTGACCTTTTTGAATTGATTTTATCAAAATTATCCCTGAGGTACATACTGCGTTTGAAAGCAGTTTCTCGTTCCTTCTACAACGCTGTCGACTATGTGTTACAGACGTCGTCCTCATCATTCACTTGCTTAGCAGAACCGCCATGGCTCTACCTTGGCATCGATGGTCATGGCTTTCGTTTTCAAAGTCTTCATCAGGAATTCAAGTTTTATCACTTGAATCAGAACAACATGGCCCAGGAGTTTCGCGATCACGTTTGCCTAGGATCGTCTAGAGGTTGGCTGCTTCTTTTGAGCAAAACCCTAGATTTTACGCTCTTGAATCCTTTATCCGCAATTCAACTTCCACTCCCTCCCAGTACCACTTTTCCAGACTTCATACTGGATACTGATTGCTTATATTATCGTGCAAGTGTCAAACGCTTTAATGCAGGGCCATACAGCATTGCATTTTGTACAACAGATGCAGATGGTAAGTGGACAAAGCTGGATGAGCGTGAATGGTACTTAAATAATTGTTGCCATCATGATCAACTCTATGCATTACGGCAAGACATCAGTACGGTTGAAGTATGGGATTTCTCGACTTCCTTTCCCATTAAAAAGATGGAAACCCAAGCGGATCATGCGCTTGGGGAACGAATAAACTATCATCAAACATGGCGGCAACCATGCTACATAGCCAAAACAGCAGAAGATCTACTCCTCATATCGAGTTTATTCAGAAAAATCTGTGTTTTTAAGCTGGATTACAATTCCGATGGTAGCTACAGATGGATAGAGACAGAATCCATTGGCAAGGGTGAATTGTATTTGAATAGGGACCAGTCACTACTAACCTCAACAGCCGATGATGCTTCAGAATGCAATAGGAACTCAATTTACTTCACAGACTTGTTGAATTCCGGCAAAGGTGCCTTTGGTTTATTTGCGTATGGTTTAAGAAAGAAAAAAGAAGAAAAGGTCCAAGACTTGGTATTTTGGATGCCATATGGATCTATTTTGTTTGATCCTAATCTTTCATTCTTTCTTAGGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

359

Amino Acids

41.7

Weight (kDa)

6.09

Isoelectric Point (pI)

40.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	9 - 45	1.1e-07	F-box domain
Beta-prop_KIB1-4	PF03478	81 - 318	6e-29	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004225)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15921 FvH4_4g04632 FvH4_4g05202 FvH4_4g05500 FvH4_7g24700
prunus_persica	Prupe.1G052900_v2.0.a1 Prupe.1G053000_v2.0.a1
rosa_laevigata	RLG00000032962
rosa_multiflora	Rmu_sc0002021.1_g000018 Rmu_sc0004598.1_g000005 Rmu_sc0010817.1_g000006 Rmu_sc0021895.1_g000002 Rmu_sc0021895.1_g000003
rosa_roxburghii	Rroxscaffold_1G00052700 Rroxscaffold_4G00286440
rosa_rugosa	Rorug03G0352300 Rorug03G0357300
rosa_samantha	Rh1AG366800 Rh1BG330300 Rh1CG343200 Rh1CG344600 Rh1DG361800 Rh4AG059700 Rh4BG058300 Rh4CG064000 Rh4DG054900 Rh4DG061400 Rh4DG061600 Rh5BG185200 Rh5CG205200
rosa_wichuraiana	Rw1G032280 Rw4G004780 Rw5G017140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	149
AccB1I	GGYRCC	1 cut(s)	953
AccB7I	CCANNNNNTGG	1 cut(s)	1012
AccI	GTMKAC	1 cut(s)	129
AccII	CGCG	1 cut(s)	288
AciI	CCGC	5 cut(s)	5, 179, 372, 659, 703
AclWI	GGATC	4 cut(s)	313, 669, 1042, 1043
AcoI	YGGCCR	1 cut(s)	26
AcsI	RAATTY	2 cut(s)	239, 940
AcuI	CTGAAG	1 cut(s)	882
AcyI	GRCGYC	1 cut(s)	146
AfaI	GTAC	5 cut(s)	83, 400, 496, 545, 601
AfiI	CCNNNNNNNGG	1 cut(s)	1012
AjnI	CCWGG	1 cut(s)	276
AjuI	GAANNNNNNNTTGG	2 cut(s)	7, 39
AluBI	AGCT	3 cut(s)	526, 784, 807
AluI	AGCT	3 cut(s)	526, 784, 807
Alw26I	GTCTC	1 cut(s)	815
AlwI	GGATC	4 cut(s)	313, 669, 1042, 1043
AoxI	GGCC	3 cut(s)	26, 273, 473
ApeKI	GCWGC	1 cut(s)	322
ApoI	RAATTY	2 cut(s)	239, 940
AspA2I	CCTAGG	1 cut(s)	301
AspLEI	GCGC	1 cut(s)	670
AspS9I	GGNCC	4 cut(s)	274, 473, 862, 1003
AsuHPI	GGTGA	1 cut(s)	854
AvaII	GGWCC	2 cut(s)	862, 1003
AvrII	CCTAGG	1 cut(s)	301
AxyI	CCTNAGG	1 cut(s)	77
BalI	TGGCCA	1 cut(s)	28
BanI	GGYRCC	1 cut(s)	953
BbsI	GAAGAC	1 cut(s)	221
BbvI	GCAGC	1 cut(s)	309
BccI	CCATC	6 cut(s)	197, 503, 570, 640, 794, 807
BceAI	ACGGC	1 cut(s)	602
BciT130I	CCWGG	1 cut(s)	278
BciVI	GTATCC	1 cut(s)	418
BclI	TGATCA	1 cut(s)	568
BcoDI	GTCTC	1 cut(s)	815
BfaI	CTAG	3 cut(s)	302, 312, 344
BfmI	CTRYAG	2 cut(s)	10, 808
BfuI	GTATCC	1 cut(s)	418
BglII	AGATCT	1 cut(s)	736
BisI	GCNGC	2 cut(s)	323, 704
BlnI	CCTAGG	1 cut(s)	301
BlpI	GCTNAGC	1 cut(s)	169
BlsI	GCNGC	2 cut(s)	324, 705
Bme1390I	CCNGG	1 cut(s)	278
Bme18I	GGWCC	2 cut(s)	862, 1003
BmgT120I	GGNCC	4 cut(s)	274, 473, 862, 1003
BmiI	GGNNCC	2 cut(s)	863, 955
BmrFI	CCNGG	1 cut(s)	278
BmrI	ACTGGG	1 cut(s)	390
BmsI	GCATC	4 cut(s)	207, 493, 883, 1014
BmuI	ACTGGG	1 cut(s)	390
BpiI	GAAGAC	1 cut(s)	221
Bpu1102I	GCTNAGC	1 cut(s)	169
Bsa29I	ATCGAT	1 cut(s)	201
BsaBI	GATNNNNATC	1 cut(s)	1053
BsaHI	GRCGYC	1 cut(s)	146
BsaJI	CCNNGG	4 cut(s)	182, 193, 276, 301
BsaXI	ACNNNNNCTCC	2 cut(s)	372, 402
Bsc4I	CCNNNNNNNGG	1 cut(s)	1012
Bse1I	ACTGG	3 cut(s)	396, 426, 865
Bse21I	CCTNAGG	1 cut(s)	77
Bse3DI	GCAATG	1 cut(s)	483
Bse8I	GATNNNNATC	1 cut(s)	1053
BseBI	CCWGG	1 cut(s)	278
BseCI	ATCGAT	1 cut(s)	201
BseDI	CCNNGG	4 cut(s)	182, 193, 276, 301
BseGI	GGATG	2 cut(s)	535, 1029
BseJI	GATNNNNATC	1 cut(s)	1053
BseLI	CCNNNNNNNGG	1 cut(s)	1012
BseMI	GCAATG	1 cut(s)	483
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	3 cut(s)	396, 426, 865
BseRI	GAGGAG	1 cut(s)	734
BseXI	GCAGC	1 cut(s)	309
Bsh1236I	CGCG	1 cut(s)	288
BshFI	GGCC	3 cut(s)	28, 275, 475
BshNI	GGYRCC	1 cut(s)	953
BshVI	ATCGAT	1 cut(s)	201
BsiSI	CCGG	1 cut(s)	945
BslFI	GGGAC	1 cut(s)	875
BslI	CCNNNNNNNGG	1 cut(s)	1012
BsmAI	GTCTC	1 cut(s)	815
BsmFI	GGGAC	1 cut(s)	875
BsmI	GAATGC	1 cut(s)	908
BsnI	GGCC	3 cut(s)	28, 275, 475
Bsp1407I	TGTACA	1 cut(s)	494
Bsp143I	GATC	7 cut(s)	289, 305, 568, 661, 736, 1034, 1048
Bsp1720I	GCTNAGC	1 cut(s)	169
Bsp19I	CCATGG	1 cut(s)	182
Bsp68I	TCGCGA	1 cut(s)	288
BspACI	CCGC	5 cut(s)	5, 179, 372, 659, 703
BspANI	GGCC	3 cut(s)	28, 275, 475
BspCNI	CTCAG	1 cut(s)	69
BspDI	ATCGAT	1 cut(s)	201
BspFNI	CGCG	1 cut(s)	288
BspHI	TCATGA	1 cut(s)	565
BspLI	GGNNCC	2 cut(s)	863, 955
BspPI	GGATC	4 cut(s)	313, 669, 1042, 1043
BspT107I	GGYRCC	1 cut(s)	953
BsrDI	GCAATG	1 cut(s)	483
BsrGI	TGTACA	1 cut(s)	494
BsrI	ACTGG	3 cut(s)	396, 426, 865
BssECI	CCNNGG	4 cut(s)	182, 193, 276, 301
BssMI	GATC	7 cut(s)	289, 305, 568, 661, 736, 1034, 1048
BssNI	GRCGYC	1 cut(s)	146
BssT1I	CCWWGG	3 cut(s)	182, 193, 301
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	2 cut(s)	11, 604
BstACI	GRCGYC	1 cut(s)	146
BstAUI	TGTACA	1 cut(s)	494
BstDEI	CTNAG	3 cut(s)	77, 169, 1070
BstDSI	CCRYGG	1 cut(s)	182
BstF5I	GGATG	2 cut(s)	535, 1029
BstFNI	CGCG	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	670
BstKTI	GATC	7 cut(s)	292, 308, 571, 664, 739, 1037, 1051
BstMAI	GTCTC	1 cut(s)	815
BstMBI	GATC	7 cut(s)	289, 305, 568, 661, 736, 1034, 1048
BstMWI	GCNNNNNNNGC	4 cut(s)	532, 665, 728, 893
BstNI	CCWGG	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	276
BstSFI	CTRYAG	2 cut(s)	10, 808
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	1 cut(s)	309
BstV2I	GAAGAC	1 cut(s)	221
BstX2I	RGATCY	2 cut(s)	736, 1034
BstYI	RGATCY	2 cut(s)	736, 1034
Bsu15I	ATCGAT	1 cut(s)	201
Bsu36I	CCTNAGG	1 cut(s)	77
BsuI	GTATCC	1 cut(s)	418
BsuRI	GGCC	3 cut(s)	28, 275, 475
BsuTUI	ATCGAT	1 cut(s)	201
BtgI	CCRYGG	1 cut(s)	182
BtsCI	GGATG	2 cut(s)	535, 1029
BtuMI	TCGCGA	1 cut(s)	288
CciI	TCATGA	1 cut(s)	565
CfoI	GCGC	1 cut(s)	670
Cfr13I	GGNCC	4 cut(s)	274, 473, 862, 1003
ClaI	ATCGAT	1 cut(s)	201
Csp6I	GTAC	5 cut(s)	82, 399, 495, 544, 600
CviAII	CATG	7 cut(s)	183, 209, 271, 566, 665, 699, 711
CviQI	GTAC	5 cut(s)	82, 399, 495, 544, 600
DdeI	CTNAG	3 cut(s)	77, 169, 1070
DpnI	GATC	7 cut(s)	291, 307, 570, 663, 738, 1036, 1050
DpnII	GATC	7 cut(s)	289, 305, 568, 661, 736, 1034, 1048
EaeI	YGGCCR	1 cut(s)	26
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	3 cut(s)	182, 193, 301
Eco47I	GGWCC	2 cut(s)	862, 1003
Eco57I	CTGAAG	1 cut(s)	882
Eco81I	CCTNAGG	1 cut(s)	77
EcoRI	GAATTC	2 cut(s)	239, 940
EcoRII	CCWGG	1 cut(s)	276
EcoT14I	CCWWGG	3 cut(s)	182, 193, 301
EcoT22I	ATGCAT	1 cut(s)	583
ErhI	CCWWGG	3 cut(s)	182, 193, 301
FaeI	CATG	7 cut(s)	186, 212, 274, 569, 668, 702, 714
FaqI	GGGAC	1 cut(s)	875
FatI	CATG	7 cut(s)	182, 208, 270, 565, 664, 698, 710
FauNDI	CATATG	1 cut(s)	1030
FbaI	TGATCA	1 cut(s)	568
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	2 cut(s)	323, 704
FokI	GGATG	2 cut(s)	542, 1036
Fsp4HI	GCNGC	2 cut(s)	323, 704
FspBI	CTAG	3 cut(s)	302, 312, 344
GlaI	GCGC	1 cut(s)	669
GluI	GCNGC	2 cut(s)	323, 704
HaeIII	GGCC	3 cut(s)	28, 275, 475
HapII	CCGG	1 cut(s)	945
HhaI	GCGC	1 cut(s)	670
Hin1I	GRCGYC	1 cut(s)	146
Hin1II	CATG	7 cut(s)	186, 212, 274, 569, 668, 702, 714
Hin6I	GCGC	1 cut(s)	668
HinP1I	GCGC	1 cut(s)	668
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	3 cut(s)	259, 361, 827
HpaII	CCGG	1 cut(s)	945
HphI	GGTGA	1 cut(s)	854
Hpy166II	GTNNAC	2 cut(s)	130, 519
Hpy188I	TCNGA	4 cut(s)	264, 764, 799, 901
Hpy188III	TCNNGA	7 cut(s)	236, 287, 312, 358, 410, 566, 622
Hpy8I	GTNNAC	2 cut(s)	130, 519
Hpy99I	CGWCG	1 cut(s)	151
HpyAV	CCTTC	1 cut(s)	124
HpyCH4III	ACNGT	2 cut(s)	11, 604
HpyCH4IV	ACGT	2 cut(s)	146, 294
HpyCH4V	TGCA	6 cut(s)	449, 470, 488, 506, 581, 906
HpyF10VI	GCNNNNNNNGC	4 cut(s)	532, 665, 728, 893
HpyF3I	CTNAG	3 cut(s)	77, 169, 1070
HpySE526I	ACGT	2 cut(s)	146, 294
Hsp92I	GRCGYC	1 cut(s)	146
Hsp92II	CATG	7 cut(s)	186, 212, 274, 569, 668, 702, 714
HspAI	GCGC	1 cut(s)	668
Ksp22I	TGATCA	1 cut(s)	568
Kzo9I	GATC	7 cut(s)	289, 305, 568, 661, 736, 1034, 1048
Lsp1109I	GCAGC	1 cut(s)	309
LweI	GCATC	4 cut(s)	207, 493, 883, 1014
MaeI	CTAG	3 cut(s)	302, 312, 344
MaeII	ACGT	2 cut(s)	146, 294
MaeIII	GTNAC	2 cut(s)	138, 867
MalI	GATC	7 cut(s)	291, 307, 570, 663, 738, 1036, 1050
MboI	GATC	7 cut(s)	289, 305, 568, 661, 736, 1034, 1048
MboII	GAAGA	3 cut(s)	221, 746, 1007
MflI	RGATCY	2 cut(s)	736, 1034
MlsI	TGGCCA	1 cut(s)	28
MluNI	TGGCCA	1 cut(s)	28
MnlI	CCTC	6 cut(s)	72, 163, 308, 402, 755, 889
Mox20I	TGGCCA	1 cut(s)	28
Mph1103I	ATGCAT	1 cut(s)	583
MscI	TGGCCA	1 cut(s)	28
MseI	TTAA	5 cut(s)	465, 548, 639, 780, 980
Msp20I	TGGCCA	1 cut(s)	28
MspI	CCGG	1 cut(s)	945
MspR9I	CCNGG	1 cut(s)	278
Mva1269I	GAATGC	1 cut(s)	908
MvaI	CCWGG	1 cut(s)	278
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	4 cut(s)	532, 665, 728, 893
NcoI	CCATGG	1 cut(s)	182
NdeI	CATATG	1 cut(s)	1030
NdeII	GATC	7 cut(s)	289, 305, 568, 661, 736, 1034, 1048
NlaIII	CATG	7 cut(s)	186, 212, 274, 569, 668, 702, 714
NlaIV	GGNNCC	2 cut(s)	863, 955
NmuCI	GTSAC	1 cut(s)	867
NruI	TCGCGA	1 cut(s)	288
NsiI	ATGCAT	1 cut(s)	583
PagI	TCATGA	1 cut(s)	565
PctI	GAATGC	1 cut(s)	908
PfeI	GAWTC	3 cut(s)	259, 361, 827
PflFI	GACNNNGTC	1 cut(s)	148
PflMI	CCANNNNNTGG	1 cut(s)	1012
PkrI	GCNGC	2 cut(s)	324, 705
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PspN4I	GGNNCC	2 cut(s)	863, 955
PspPI	GGNCC	4 cut(s)	274, 473, 862, 1003
PsrI	GAACNNNNNNTAC	2 cut(s)	905, 937
PsuI	RGATCY	2 cut(s)	736, 1034
PsyI	GACNNNGTC	1 cut(s)	148
RruI	TCGCGA	1 cut(s)	288
RsaI	GTAC	5 cut(s)	83, 400, 496, 545, 601
RsaNI	GTAC	5 cut(s)	82, 399, 495, 544, 600
SalI	GTCGAC	1 cut(s)	128
SaqAI	TTAA	5 cut(s)	465, 548, 639, 780, 980
SatI	GCNGC	2 cut(s)	323, 704
Sau3AI	GATC	7 cut(s)	289, 305, 568, 661, 736, 1034, 1048
Sau96I	GGNCC	4 cut(s)	274, 473, 862, 1003
ScrFI	CCNGG	1 cut(s)	278
SfaNI	GCATC	4 cut(s)	207, 493, 883, 1014
SfcI	CTRYAG	2 cut(s)	10, 808
SinI	GGWCC	2 cut(s)	862, 1003
SsiI	CCGC	5 cut(s)	5, 179, 372, 659, 703
SspMI	CTAG	3 cut(s)	302, 312, 344
StyD4I	CCNGG	1 cut(s)	276
StyI	CCWWGG	3 cut(s)	182, 193, 301
TaaI	ACNGT	2 cut(s)	11, 604
TaiI	ACGT	2 cut(s)	149, 297
TaqI	TCGA	4 cut(s)	129, 201, 623, 752
TatI	WGTACW	1 cut(s)	494
TauI	GCSGC	1 cut(s)	706
TfiI	GAWTC	3 cut(s)	259, 361, 827
Tru1I	TTAA	5 cut(s)	465, 548, 639, 780, 980
Tru9I	TTAA	5 cut(s)	465, 548, 639, 780, 980
TseFI	GTSAC	1 cut(s)	867
TseI	GCWGC	1 cut(s)	322
Tsp45I	GTSAC	1 cut(s)	867
TspDTI	ATGAA	3 cut(s)	221, 406, 1050
Tth111I	GACNNNGTC	1 cut(s)	148
Van91I	CCANNNNNTGG	1 cut(s)	1012
VpaK11BI	GGWCC	2 cut(s)	862, 1003
XapI	RAATTY	2 cut(s)	239, 940
XbaI	TCTAGA	1 cut(s)	311
XcmI	CCANNNNNNNNNTGG	1 cut(s)	643
XmaJI	CCTAGG	1 cut(s)	301
XmiI	GTMKAC	1 cut(s)	129
XspI	CTAG	3 cut(s)	302, 312, 344
ZraI	GACGTC	1 cut(s)	147
Zsp2I	ATGCAT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.