Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0004225

Physical Location & Seq

Genomic Coordinates Forward (+)

11980776 .. 11981857

Gene Structure 1082 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG064000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGCGCTTTAAAGCAGTTTGTCCCTCTTGGTCTGCTTCAGTTGATGAAATCACCAAGTCACGATCCTTCACTTGGCTACCCGAAACAACGTGGCTCGTTCTTCCCCGAGATCTGAATAAAGGTGAGGCCATTGATGGGTCTAGGTTTTACAGTCTTAAAGGAAACTTTTACAACTCGAACATAAACATGCCCGAGGAGTCCAGAGATGCAGTTTGCCTTGGATCCTCTCACGGTTGGCTAGTTTTGTTGAACAATCAGCTCGAGTTTATGATCTCAACTCCATTCTTATCTGGAATTCAACTTCCCCTGCCACCACTCAAGACTTTTCCAGATATACTTGGCATTACTTATCAGAAAGGTACTACTTATGCATACAATATTGTTGATCACTTCACATTAGCATGCAAAACTTCTGATGAGGCTGAAAGGCCTCCCAGTGATAAATTCTTGGATTTCACTTCTGTGAAGCATTTGGCAAGCAAGATGAGAGCCAAGGCTGGGTTGTCTTCACGTCCGACATGCAGCAACAAAGACAAGATTGGAGTCATGGTGATGTACATCTTTGAAGACAGAGATAATTGCAGGTACAACAGCCTTGCTTTCTGCACAACATCTGATTATAAGTGGACAAAACTTGAGGAGCGCAGATGGTACAAAGAAATCATGGGGTGTGGTAATGAGTTCTATGTCTTAAAGGAAGACTATAGTGTTGATGTCTGGGATTTCGGCACATCTTCCATTCCCATGAAGAAGATGGAAATCAAACCTGTTGCATGTGCAATACTTGCCGAAGTAAGAGGAAGGTCTCCCAAGGTTTACATGATCAAAACAGTGGGGACTGGTCTAATGCTGGTAGTGGAATATGTTCATATCTCACAAATTCAATTCCGTGTTTATAAGCTGGAGGGGACAACTCCTGTGTGGCAGGAGGTGCAATCGATTGGGAGTAATGCCTTGGTTTTAGTTCGAACAATTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

326

Amino Acids

37.13

Weight (kDa)

8.5

Isoelectric Point (pI)

46.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	49 - 323	9.3e-29	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004225)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15921 FvH4_4g04632 FvH4_4g05202 FvH4_4g05500 FvH4_7g24700
prunus_persica	Prupe.1G052900_v2.0.a1 Prupe.1G053000_v2.0.a1
rosa_laevigata	RLG00000032962
rosa_multiflora	Rmu_sc0002021.1_g000018 Rmu_sc0004598.1_g000005 Rmu_sc0010817.1_g000006 Rmu_sc0021895.1_g000002 Rmu_sc0021895.1_g000003
rosa_roxburghii	Rroxscaffold_1G00052700 Rroxscaffold_4G00286440
rosa_rugosa	Rorug03G0352300 Rorug03G0357300
rosa_samantha	Rh1AG366800 Rh1BG330300 Rh1CG343200 Rh1CG344600 Rh1DG361800 Rh4AG059700 Rh4BG058300 Rh4CG064000 Rh4DG054900 Rh4DG061400 Rh4DG061600 Rh5BG185200 Rh5CG205200
rosa_wichuraiana	Rw1G032280 Rw4G004780 Rw5G017140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	621, 897
Acc36I	ACCTGC	1 cut(s)	573
AclWI	GGATC	3 cut(s)	57, 216, 229
AcsI	RAATTY	3 cut(s)	294, 443, 879
AcuI	CTGAAG	1 cut(s)	21
AfaI	GTAC	4 cut(s)	361, 557, 587, 653
AfiI	CCNNNNNNNGG	3 cut(s)	72, 135, 498
AgsI	TTSAA	4 cut(s)	250, 299, 566, 884
AjiI	CACGTC	1 cut(s)	512
AleI	CACNNNNGTG	1 cut(s)	461
AluBI	AGCT	2 cut(s)	259, 901
AluI	AGCT	2 cut(s)	259, 901
Alw26I	GTCTC	1 cut(s)	810
AlwI	GGATC	3 cut(s)	57, 216, 229
Ama87I	CYCGRG	3 cut(s)	105, 191, 260
AoxI	GGCC	2 cut(s)	126, 428
ApeKI	GCWGC	1 cut(s)	522
ApoI	RAATTY	3 cut(s)	294, 443, 879
Asp700I	GAANNNNTTC	1 cut(s)	864
AspLEI	GCGC	2 cut(s)	6, 645
AsuHPI	GGTGA	3 cut(s)	43, 134, 562
AsuII	TTCGAA	1 cut(s)	967
AvaI	CYCGRG	3 cut(s)	105, 191, 260
BamHI	GGATCC	1 cut(s)	221
BbsI	GAAGAC	3 cut(s)	498, 573, 705
BbvI	GCAGC	1 cut(s)	534
BccI	CCATC	3 cut(s)	128, 642, 748
BclI	TGATCA	2 cut(s)	385, 822
BcoDI	GTCTC	1 cut(s)	810
BfaI	CTAG	2 cut(s)	141, 239
BfmI	CTRYAG	1 cut(s)	703
BfuAI	ACCTGC	1 cut(s)	573
BglII	AGATCT	1 cut(s)	109
BisI	GCNGC	1 cut(s)	523
BlsI	GCNGC	1 cut(s)	524
BmeT110I	CYCGRG	3 cut(s)	105, 191, 260
BmgBI	CACGTC	1 cut(s)	512
BmiI	GGNNCC	1 cut(s)	223
BmrI	ACTGGG	1 cut(s)	429
BmsI	GCATC	1 cut(s)	196
BmuI	ACTGGG	1 cut(s)	429
BpiI	GAAGAC	3 cut(s)	498, 573, 705
BpmI	CTGGAG	1 cut(s)	923
Bpu14I	TTCGAA	1 cut(s)	967
BpuEI	CTTGAG	2 cut(s)	302, 656
Bsa29I	ATCGAT	1 cut(s)	938
BsaBI	GATNNNNATC	2 cut(s)	557, 758
BsaI	GGTCTC	1 cut(s)	810
BsaJI	CCNNGG	5 cut(s)	192, 217, 492, 810, 954
BsaXI	ACNNNNNCTCC	2 cut(s)	534, 564
Bsc4I	CCNNNNNNNGG	3 cut(s)	72, 135, 498
Bse1I	ACTGG	2 cut(s)	435, 844
Bse8I	GATNNNNATC	2 cut(s)	557, 758
BseCI	ATCGAT	1 cut(s)	938
BseDI	CCNNGG	5 cut(s)	192, 217, 492, 810, 954
BseJI	GATNNNNATC	2 cut(s)	557, 758
BseLI	CCNNNNNNNGG	3 cut(s)	72, 135, 498
BseNI	ACTGG	2 cut(s)	435, 844
BseRI	GAGGAG	2 cut(s)	209, 653
BseXI	GCAGC	1 cut(s)	534
BseYI	CCCAGC	1 cut(s)	497
BsgI	GTGCAG	1 cut(s)	589
BshFI	GGCC	2 cut(s)	128, 430
BshVI	ATCGAT	1 cut(s)	938
BsiHKCI	CYCGRG	3 cut(s)	105, 191, 260
BslFI	GGGAC	3 cut(s)	6, 850, 922
BslI	CCNNNNNNNGG	3 cut(s)	72, 135, 498
BsmAI	GTCTC	1 cut(s)	810
BsmFI	GGGAC	3 cut(s)	6, 850, 922
BsnI	GGCC	2 cut(s)	128, 430
Bso31I	GGTCTC	1 cut(s)	810
BsoBI	CYCGRG	3 cut(s)	105, 191, 260
Bsp119I	TTCGAA	1 cut(s)	967
Bsp1407I	TGTACA	1 cut(s)	555
Bsp143I	GATC	6 cut(s)	62, 109, 221, 270, 385, 822
BspANI	GGCC	2 cut(s)	128, 430
BspDI	ATCGAT	1 cut(s)	938
BspLI	GGNNCC	1 cut(s)	223
BspMI	ACCTGC	1 cut(s)	573
BspPI	GGATC	3 cut(s)	57, 216, 229
BspT104I	TTCGAA	1 cut(s)	967
BspTNI	GGTCTC	1 cut(s)	810
BsrGI	TGTACA	1 cut(s)	555
BsrI	ACTGG	2 cut(s)	435, 844
BssECI	CCNNGG	5 cut(s)	192, 217, 492, 810, 954
BssMI	GATC	6 cut(s)	62, 109, 221, 270, 385, 822
BssT1I	CCWWGG	4 cut(s)	217, 492, 810, 954
Bst4CI	ACNGT	3 cut(s)	152, 233, 832
BstAPI	GCANNNNNTGC	2 cut(s)	785, 931
BstAUI	TGTACA	1 cut(s)	555
BstBI	TTCGAA	1 cut(s)	967
BstC8I	GCNNGC	2 cut(s)	403, 478
BstHHI	GCGC	2 cut(s)	6, 645
BstKTI	GATC	6 cut(s)	65, 112, 224, 273, 388, 825
BstMAI	GTCTC	1 cut(s)	810
BstMBI	GATC	6 cut(s)	62, 109, 221, 270, 385, 822
BstMWI	GCNNNNNNNGC	2 cut(s)	785, 931
BstNSI	RCATGY	4 cut(s)	190, 405, 522, 777
BstSFI	CTRYAG	1 cut(s)	703
BstV1I	GCAGC	1 cut(s)	534
BstV2I	GAAGAC	3 cut(s)	498, 573, 705
BstX2I	RGATCY	2 cut(s)	109, 221
BstYI	RGATCY	2 cut(s)	109, 221
Bsu15I	ATCGAT	1 cut(s)	938
BsuRI	GGCC	2 cut(s)	128, 430
BsuTUI	ATCGAT	1 cut(s)	938
BtrI	CACGTC	1 cut(s)	512
BtsIMutI	CAGTG	2 cut(s)	442, 837
BveI	ACCTGC	1 cut(s)	573
Cac8I	GCNNGC	2 cut(s)	403, 478
CfoI	GCGC	2 cut(s)	6, 645
ClaI	ATCGAT	1 cut(s)	938
Csp6I	GTAC	4 cut(s)	360, 556, 586, 652
CviAII	CATG	8 cut(s)	187, 402, 519, 547, 664, 745, 774, 820
CviQI	GTAC	4 cut(s)	360, 556, 586, 652
DpnI	GATC	6 cut(s)	64, 111, 223, 272, 387, 824
DpnII	GATC	6 cut(s)	62, 109, 221, 270, 385, 822
DraI	TTTAAA	1 cut(s)	10
Eco130I	CCWWGG	4 cut(s)	217, 492, 810, 954
Eco147I	AGGCCT	1 cut(s)	430
Eco31I	GGTCTC	1 cut(s)	810
Eco57I	CTGAAG	1 cut(s)	21
Eco88I	CYCGRG	3 cut(s)	105, 191, 260
EcoRI	GAATTC	1 cut(s)	294
EcoT14I	CCWWGG	4 cut(s)	217, 492, 810, 954
EcoT22I	ATGCAT	1 cut(s)	373
ErhI	CCWWGG	4 cut(s)	217, 492, 810, 954
FaeI	CATG	8 cut(s)	190, 405, 522, 550, 667, 748, 777, 823
FaqI	GGGAC	3 cut(s)	6, 850, 922
FatI	CATG	8 cut(s)	186, 401, 518, 546, 663, 744, 773, 819
FbaI	TGATCA	2 cut(s)	385, 822
Fnu4HI	GCNGC	1 cut(s)	523
Fsp4HI	GCNGC	1 cut(s)	523
FspBI	CTAG	2 cut(s)	141, 239
GlaI	GCGC	2 cut(s)	5, 644
GluI	GCNGC	1 cut(s)	523
GsaI	CCCAGC	1 cut(s)	501
GsuI	CTGGAG	1 cut(s)	923
HaeIII	GGCC	2 cut(s)	128, 430
HhaI	GCGC	2 cut(s)	6, 645
Hin1II	CATG	8 cut(s)	190, 405, 522, 550, 667, 748, 777, 823
Hin6I	GCGC	2 cut(s)	4, 643
HinP1I	GCGC	2 cut(s)	4, 643
HinfI	GANTC	2 cut(s)	197, 543
HphI	GGTGA	3 cut(s)	43, 134, 562
Hpy166II	GTNNAC	2 cut(s)	627, 817
Hpy188I	TCNGA	5 cut(s)	114, 354, 415, 516, 616
Hpy188III	TCNNGA	5 cut(s)	60, 201, 291, 319, 329
Hpy8I	GTNNAC	2 cut(s)	627, 817
HpyAV	CCTTC	2 cut(s)	76, 795
HpyCH4III	ACNGT	3 cut(s)	152, 233, 832
HpyCH4IV	ACGT	2 cut(s)	89, 511
HpyCH4V	TGCA	9 cut(s)	209, 371, 405, 522, 582, 606, 773, 779, 934
HpyF10VI	GCNNNNNNNGC	2 cut(s)	785, 931
HpySE526I	ACGT	2 cut(s)	89, 511
Hsp92II	CATG	8 cut(s)	190, 405, 522, 550, 667, 748, 777, 823
HspAI	GCGC	2 cut(s)	4, 643
Ksp22I	TGATCA	2 cut(s)	385, 822
Kzo9I	GATC	6 cut(s)	62, 109, 221, 270, 385, 822
LmnI	GCTCC	1 cut(s)	640
Lsp1109I	GCAGC	1 cut(s)	534
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	2 cut(s)	141, 239
MaeII	ACGT	2 cut(s)	89, 511
MaeIII	GTNAC	1 cut(s)	57
MalI	GATC	6 cut(s)	64, 111, 223, 272, 387, 824
MboI	GATC	6 cut(s)	62, 109, 221, 270, 385, 822
MboII	GAAGA	7 cut(s)	92, 498, 578, 710, 726, 760, 763
MflI	RGATCY	2 cut(s)	109, 221
MluCI	AATT	6 cut(s)	294, 443, 577, 879, 884, 972
MlyI	GAGTC	2 cut(s)	206, 552
MmeI	TCCRAC	1 cut(s)	539
Mph1103I	ATGCAT	1 cut(s)	373
MroXI	GAANNNNTTC	1 cut(s)	864
MseI	TTAA	3 cut(s)	9, 156, 692
MslI	CAYNNNNRTG	5 cut(s)	185, 400, 461, 551, 743
MwoI	GCNNNNNNNGC	2 cut(s)	785, 931
NdeII	GATC	6 cut(s)	62, 109, 221, 270, 385, 822
NlaIII	CATG	8 cut(s)	190, 405, 522, 550, 667, 748, 777, 823
NlaIV	GGNNCC	1 cut(s)	223
NmuCI	GTSAC	1 cut(s)	57
NsiI	ATGCAT	1 cut(s)	373
NspI	RCATGY	4 cut(s)	190, 405, 522, 777
NspV	TTCGAA	1 cut(s)	967
OliI	CACNNNNGTG	1 cut(s)	461
PaeI	GCATGC	1 cut(s)	405
PaeR7I	CTCGAG	1 cut(s)	260
PceI	AGGCCT	1 cut(s)	430
PdmI	GAANNNNTTC	1 cut(s)	864
PkrI	GCNGC	1 cut(s)	524
PleI	GAGTC	2 cut(s)	205, 551
PpsI	GAGTC	2 cut(s)	205, 551
PsiI	TTATAA	2 cut(s)	621, 897
PspFI	CCCAGC	1 cut(s)	497
PspN4I	GGNNCC	1 cut(s)	223
PspXI	VCTCGAGB	1 cut(s)	260
PsuI	RGATCY	2 cut(s)	109, 221
RsaI	GTAC	4 cut(s)	361, 557, 587, 653
RsaNI	GTAC	4 cut(s)	360, 556, 586, 652
RseI	CAYNNNNRTG	5 cut(s)	185, 400, 461, 551, 743
SaqAI	TTAA	3 cut(s)	9, 156, 692
SatI	GCNGC	1 cut(s)	523
Sau3AI	GATC	6 cut(s)	62, 109, 221, 270, 385, 822
SchI	GAGTC	2 cut(s)	206, 552
SfaNI	GCATC	1 cut(s)	196
SfcI	CTRYAG	1 cut(s)	703
Sfr274I	CTCGAG	1 cut(s)	260
SfuI	TTCGAA	1 cut(s)	967
SlaI	CTCGAG	1 cut(s)	260
SmiMI	CAYNNNNRTG	5 cut(s)	185, 400, 461, 551, 743
SmlI	CTYRAG	3 cut(s)	260, 317, 635
SmoI	CTYRAG	3 cut(s)	260, 317, 635
SphI	GCATGC	1 cut(s)	405
Sse9I	AATT	6 cut(s)	294, 443, 577, 879, 884, 972
SseBI	AGGCCT	1 cut(s)	430
SspI	AATATT	1 cut(s)	379
SspMI	CTAG	2 cut(s)	141, 239
StuI	AGGCCT	1 cut(s)	430
StyI	CCWWGG	4 cut(s)	217, 492, 810, 954
TaaI	ACNGT	3 cut(s)	152, 233, 832
TaiI	ACGT	2 cut(s)	92, 514
TaqI	TCGA	4 cut(s)	176, 261, 938, 967
TasI	AATT	6 cut(s)	294, 443, 577, 879, 884, 972
TatI	WGTACW	1 cut(s)	555
Tru1I	TTAA	3 cut(s)	9, 156, 692
Tru9I	TTAA	3 cut(s)	9, 156, 692
TscAI	CASTG	2 cut(s)	442, 837
TseFI	GTSAC	1 cut(s)	57
TseI	GCWGC	1 cut(s)	522
Tsp45I	GTSAC	1 cut(s)	57
TspDTI	ATGAA	3 cut(s)	60, 761, 857
TspGWI	ACGGA	1 cut(s)	878
TspRI	CASTG	2 cut(s)	442, 837
XapI	RAATTY	3 cut(s)	294, 443, 879
XceI	RCATGY	4 cut(s)	190, 405, 522, 777
XcmI	CCANNNNNNNNNTGG	1 cut(s)	751
XhoI	CTCGAG	1 cut(s)	260
XmnI	GAANNNNTTC	1 cut(s)	864
XspI	CTAG	2 cut(s)	141, 239
Zsp2I	ATGCAT	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.