Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004225

Physical Location & Seq

Genomic Coordinates Reverse (-)

4468267 .. 4470081

Gene Structure 1815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g05202.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGGTCACTGTGGGTTTCGTTTTTACAGTCTTGAAGGAAAGACTTACAACTTGAACAAGAACATTCCTGAAGAACTAGGTCATCGTGTTTGCCTCGGTTCTGATCAAGGCTGGCTTCTCGTTCTTGTCTTGCAGAAGATGAACTTTTCAAAGCTTCTGCTCTTTAATCCCTTATCTGGCACACAACTTCTACTTCCACCTCTCAGAAGTTTCCCAGATATACTTTACATTGCTCATTACCATGATGAAGACTCGTCTAAAATCAAAAGCGAAGTACATATCAAAATCACCAATCCGGATCCTACTACACCACCACGATCGTTCTGTTTAGAAATTAGATTAGCGGAAGATATTAGGACAAAGTTTAGAACCACAGCAGTAATTCTGTCCTCTCGGCCAATTCTCAACAGCAACAACAAAAGAAGCAGCAGCATTGGGGTGTTTGTATTGTACAGATATGTGACGCAGATGATGCGTGGTTATTCTCTCGCGTTCTGTACGACTGCAGATGATGAGTGGACAAAACTTGATGAACAAAGAGCATACCGAGATATTACGAGCTATGAGAATCAGCTTTATGCTTTGTGTTGTGATCACCAAGATATTACGAGCTTTGAGAATGCTCTGTGTTGTGATCAGTCTACAGTTCAAGGCTCTCTGAACTATCATTATTCTGGAGAAAACATATCCTATAGTTTTGCTGGCTCTCCGTGTCGGCAGCCATATGCATTCATCTGGCTTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

249

Amino Acids

28.47

Weight (kDa)

6.64

Isoelectric Point (pI)

51.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	8 - 205	6.1e-19	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004225)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15921 FvH4_4g04632 FvH4_4g05202 FvH4_4g05500 FvH4_7g24700
prunus_persica	Prupe.1G052900_v2.0.a1 Prupe.1G053000_v2.0.a1
rosa_laevigata	RLG00000032962
rosa_multiflora	Rmu_sc0002021.1_g000018 Rmu_sc0004598.1_g000005 Rmu_sc0010817.1_g000006 Rmu_sc0021895.1_g000002 Rmu_sc0021895.1_g000003
rosa_roxburghii	Rroxscaffold_1G00052700 Rroxscaffold_4G00286440
rosa_rugosa	Rorug03G0352300 Rorug03G0357300
rosa_samantha	Rh1AG366800 Rh1BG330300 Rh1CG343200 Rh1CG344600 Rh1DG361800 Rh4AG059700 Rh4BG058300 Rh4CG064000 Rh4DG054900 Rh4DG061400 Rh4DG061600 Rh5BG185200 Rh5CG205200
rosa_wichuraiana	Rw1G032280 Rw4G004780 Rw5G017140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	641
AccII	CGCG	1 cut(s)	491
AccIII	TCCGGA	1 cut(s)	295
AciI	CCGC	1 cut(s)	344
AclWI	GGATC	2 cut(s)	293, 306
AcoI	YGGCCR	1 cut(s)	395
AcuI	CTGAAG	1 cut(s)	90
AfaI	GTAC	3 cut(s)	276, 452, 499
AfiI	CCNNNNNNNGG	1 cut(s)	176
AgsI	TTSAA	4 cut(s)	35, 55, 150, 650
AluBI	AGCT	4 cut(s)	154, 561, 574, 612
AluI	AGCT	4 cut(s)	154, 561, 574, 612
AlwI	GGATC	2 cut(s)	293, 306
Aor13HI	TCCGGA	1 cut(s)	295
AoxI	GGCC	1 cut(s)	395
ApeKI	GCWGC	3 cut(s)	426, 429, 718
AsuHPI	GGTGA	2 cut(s)	280, 587
BamHI	GGATCC	1 cut(s)	298
BbsI	GAAGAC	1 cut(s)	255
BbvI	GCAGC	3 cut(s)	438, 441, 730
BclI	TGATCA	3 cut(s)	103, 592, 634
BfaI	CTAG	2 cut(s)	77, 745
BfmI	CTRYAG	3 cut(s)	504, 642, 691
BisI	GCNGC	3 cut(s)	427, 430, 719
BlsI	GCNGC	3 cut(s)	428, 431, 720
BmiI	GGNNCC	1 cut(s)	300
BmsI	GCATC	1 cut(s)	462
BpiI	GAAGAC	1 cut(s)	255
BpmI	CTGGAG	1 cut(s)	696
BsaJI	CCNNGG	1 cut(s)	94
BsaWI	WCCGGW	1 cut(s)	295
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
Bse3DI	GCAATG	1 cut(s)	228
BseAI	TCCGGA	1 cut(s)	295
BseDI	CCNNGG	1 cut(s)	94
BseLI	CCNNNNNNNGG	1 cut(s)	176
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	217
BseXI	GCAGC	3 cut(s)	438, 441, 730
Bsh1236I	CGCG	1 cut(s)	491
Bsh1285I	CGRYCG	1 cut(s)	320
BshFI	GGCC	1 cut(s)	397
BsiEI	CGRYCG	1 cut(s)	320
BsiSI	CCGG	1 cut(s)	296
BslI	CCNNNNNNNGG	1 cut(s)	176
BsmI	GAATGC	2 cut(s)	625, 728
BsnI	GGCC	1 cut(s)	397
Bsp13I	TCCGGA	1 cut(s)	295
Bsp1407I	TGTACA	1 cut(s)	450
Bsp143I	GATC	5 cut(s)	103, 298, 317, 592, 634
BspACI	CCGC	1 cut(s)	344
BspANI	GGCC	1 cut(s)	397
BspCNI	CTCAG	1 cut(s)	216
BspEI	TCCGGA	1 cut(s)	295
BspFNI	CGCG	1 cut(s)	491
BspLI	GGNNCC	1 cut(s)	300
BspMAI	CTGCAG	1 cut(s)	508
BspPI	GGATC	2 cut(s)	293, 306
BsrDI	GCAATG	1 cut(s)	228
BsrGI	TGTACA	1 cut(s)	450
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	5 cut(s)	103, 298, 317, 592, 634
Bst4CI	ACNGT	3 cut(s)	11, 29, 646
BstAPI	GCANNNNNTGC	1 cut(s)	472
BstAUI	TGTACA	1 cut(s)	450
BstC8I	GCNNGC	2 cut(s)	113, 703
BstDEI	CTNAG	1 cut(s)	203
BstFNI	CGCG	1 cut(s)	491
BstKTI	GATC	5 cut(s)	106, 301, 320, 595, 637
BstMBI	GATC	5 cut(s)	103, 298, 317, 592, 634
BstMCI	CGRYCG	1 cut(s)	320
BstMWI	GCNNNNNNNGC	1 cut(s)	472
BstSFI	CTRYAG	3 cut(s)	504, 642, 691
BstUI	CGCG	1 cut(s)	491
BstV1I	GCAGC	3 cut(s)	438, 441, 730
BstV2I	GAAGAC	1 cut(s)	255
BstX2I	RGATCY	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	298
BsuRI	GGCC	1 cut(s)	397
BtsIMutI	CAGTG	1 cut(s)	7
Cac8I	GCNNGC	2 cut(s)	113, 703
CseI	GACGC	1 cut(s)	472
Csp6I	GTAC	3 cut(s)	275, 451, 498
CviAII	CATG	1 cut(s)	242
CviQI	GTAC	3 cut(s)	275, 451, 498
DdeI	CTNAG	1 cut(s)	203
DpnI	GATC	5 cut(s)	105, 300, 319, 594, 636
DpnII	GATC	5 cut(s)	103, 298, 317, 592, 634
EaeI	YGGCCR	1 cut(s)	395
Eco57I	CTGAAG	1 cut(s)	90
EcoT22I	ATGCAT	1 cut(s)	730
FaeI	CATG	1 cut(s)	245
FalI	AAGNNNNNCTT	4 cut(s)	99, 131, 128, 160
FatI	CATG	1 cut(s)	241
FauNDI	CATATG	1 cut(s)	724
FbaI	TGATCA	3 cut(s)	103, 592, 634
FblI	GTMKAC	1 cut(s)	641
Fnu4HI	GCNGC	3 cut(s)	427, 430, 719
Fsp4HI	GCNGC	3 cut(s)	427, 430, 719
FspBI	CTAG	2 cut(s)	77, 745
GluI	GCNGC	3 cut(s)	427, 430, 719
GsuI	CTGGAG	1 cut(s)	696
HaeIII	GGCC	1 cut(s)	397
HapII	CCGG	1 cut(s)	296
HgaI	GACGC	1 cut(s)	472
Hin1II	CATG	1 cut(s)	245
HindIII	AAGCTT	1 cut(s)	152
HinfI	GANTC	2 cut(s)	251, 568
HpaII	CCGG	1 cut(s)	296
HphI	GGTGA	2 cut(s)	280, 587
Hpy166II	GTNNAC	2 cut(s)	519, 642
Hpy188I	TCNGA	3 cut(s)	103, 206, 660
Hpy188III	TCNNGA	4 cut(s)	32, 68, 296, 675
Hpy8I	GTNNAC	2 cut(s)	519, 642
HpyAV	CCTTC	1 cut(s)	29
HpyCH4III	ACNGT	3 cut(s)	11, 29, 646
HpyCH4V	TGCA	3 cut(s)	133, 506, 728
HpyF10VI	GCNNNNNNNGC	1 cut(s)	472
HpyF3I	CTNAG	1 cut(s)	203
Hsp92II	CATG	1 cut(s)	245
Kpn2I	TCCGGA	1 cut(s)	295
Ksp22I	TGATCA	3 cut(s)	103, 592, 634
Kzo9I	GATC	5 cut(s)	103, 298, 317, 592, 634
LpnPI	CCDG	8 cut(s)	81, 97, 162, 228, 309, 660, 687, 721
Lsp1109I	GCAGC	3 cut(s)	438, 441, 730
LweI	GCATC	1 cut(s)	462
MaeI	CTAG	2 cut(s)	77, 745
MaeIII	GTNAC	2 cut(s)	5, 460
MalI	GATC	5 cut(s)	105, 300, 319, 594, 636
MboI	GATC	5 cut(s)	103, 298, 317, 592, 634
MboII	GAAGA	4 cut(s)	83, 148, 260, 359
MflI	RGATCY	1 cut(s)	298
MluCI	AATT	3 cut(s)	333, 381, 399
MlyI	GAGTC	1 cut(s)	245
MnlI	CCTC	3 cut(s)	104, 210, 400
Mph1103I	ATGCAT	1 cut(s)	730
MroI	TCCGGA	1 cut(s)	295
MseI	TTAA	1 cut(s)	165
MslI	CAYNNNNRTG	2 cut(s)	240, 437
MspI	CCGG	1 cut(s)	296
Mva1269I	GAATGC	2 cut(s)	625, 728
MvnI	CGCG	1 cut(s)	491
MwoI	GCNNNNNNNGC	1 cut(s)	472
NdeI	CATATG	1 cut(s)	724
NdeII	GATC	5 cut(s)	103, 298, 317, 592, 634
NlaIII	CATG	1 cut(s)	245
NlaIV	GGNNCC	1 cut(s)	300
NmeAIII	GCCGAG	1 cut(s)	373
NmuCI	GTSAC	2 cut(s)	5, 460
NsiI	ATGCAT	1 cut(s)	730
PctI	GAATGC	2 cut(s)	625, 728
PfeI	GAWTC	1 cut(s)	568
PkrI	GCNGC	3 cut(s)	428, 431, 720
Ple19I	CGATCG	1 cut(s)	320
PleI	GAGTC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	245
PspN4I	GGNNCC	1 cut(s)	300
PstI	CTGCAG	1 cut(s)	508
PsuI	RGATCY	1 cut(s)	298
PvuI	CGATCG	1 cut(s)	320
RsaI	GTAC	3 cut(s)	276, 452, 499
RsaNI	GTAC	3 cut(s)	275, 451, 498
RseI	CAYNNNNRTG	2 cut(s)	240, 437
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	3 cut(s)	427, 430, 719
Sau3AI	GATC	5 cut(s)	103, 298, 317, 592, 634
SchI	GAGTC	1 cut(s)	245
SetI	ASST	6 cut(s)	82, 156, 202, 563, 576, 614
SfaNI	GCATC	1 cut(s)	462
SfcI	CTRYAG	3 cut(s)	504, 642, 691
SmiMI	CAYNNNNRTG	2 cut(s)	240, 437
Sse9I	AATT	3 cut(s)	333, 381, 399
SsiI	CCGC	1 cut(s)	344
SspMI	CTAG	2 cut(s)	77, 745
TaaI	ACNGT	3 cut(s)	11, 29, 646
TasI	AATT	3 cut(s)	333, 381, 399
TatI	WGTACW	2 cut(s)	274, 450
TfiI	GAWTC	1 cut(s)	568
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TscAI	CASTG	1 cut(s)	14
TseFI	GTSAC	2 cut(s)	5, 460
TseI	GCWGC	3 cut(s)	426, 429, 718
Tsp45I	GTSAC	2 cut(s)	5, 460
TspDTI	ATGAA	4 cut(s)	155, 261, 546, 721
TspGWI	ACGGA	1 cut(s)	699
TspRI	CASTG	1 cut(s)	14
XmiI	GTMKAC	1 cut(s)	641
XspI	CTAG	2 cut(s)	77, 745
Zsp2I	ATGCAT	1 cut(s)	730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.