Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002021.1

Orthogroup ID

OG0004225

Physical Location & Seq

Genomic Coordinates Reverse (-)

73381 .. 73737

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002021.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atgatggcggactgtagaaaaccaaattggccagaacttcccattgacctttttgaattgattttatcaaaattatccctgagttacatactgcgtttgaaagcagtttctcgttccttctacaacgctgtcgaccatgtgttacagacgtcctcctcatcattcacttgcttagcagaaccgccatggctctaccttggcatcgatggtcatggctttcgttttcaaagtcttcatcaggaattcaagttttaccacttgaatcagaacaacatggcccaggagtttcgcgatcacttttgcctaggatcgtccagaggttgcgctgcttcttttgagcaaaaccctagattttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

118

Amino Acids

13.71

Weight (kDa)

6.95

Isoelectric Point (pI)

47.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004225)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15921 FvH4_4g04632 FvH4_4g05202 FvH4_4g05500 FvH4_7g24700
prunus_persica	Prupe.1G052900_v2.0.a1 Prupe.1G053000_v2.0.a1
rosa_laevigata	RLG00000032962
rosa_multiflora	Rmu_sc0002021.1_g000018 Rmu_sc0004598.1_g000005 Rmu_sc0010817.1_g000006 Rmu_sc0021895.1_g000002 Rmu_sc0021895.1_g000003
rosa_roxburghii	Rroxscaffold_1G00052700 Rroxscaffold_4G00286440
rosa_rugosa	Rorug03G0352300 Rorug03G0357300
rosa_samantha	Rh1AG366800 Rh1BG330300 Rh1CG343200 Rh1CG344600 Rh1DG361800 Rh4AG059700 Rh4BG058300 Rh4CG064000 Rh4DG054900 Rh4DG061400 Rh4DG061600 Rh5BG185200 Rh5CG205200
rosa_wichuraiana	Rw1G032280 Rw4G004780 Rw5G017140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	152
AccI	GTMKAC	1 cut(s)	132
AccII	CGCG	1 cut(s)	291
AciI	CCGC	2 cut(s)	8, 182
AclWI	GGATC	1 cut(s)	316
AcoI	YGGCCR	1 cut(s)	29
AcsI	RAATTY	1 cut(s)	242
AcyI	GRCGYC	1 cut(s)	149
AgsI	TTSAA	5 cut(s)	56, 100, 227, 247, 262
AjnI	CCWGG	1 cut(s)	279
AjuI	GAANNNNNNNTTGG	2 cut(s)	10, 42
AlwI	GGATC	1 cut(s)	316
AoxI	GGCC	2 cut(s)	29, 276
ApeKI	GCWGC	1 cut(s)	326
ApoI	RAATTY	1 cut(s)	242
AspA2I	CCTAGG	1 cut(s)	304
AspLEI	GCGC	1 cut(s)	326
AspS9I	GGNCC	1 cut(s)	277
AvrII	CCTAGG	1 cut(s)	304
BalI	TGGCCA	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	224
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	1 cut(s)	200
BciT130I	CCWGG	1 cut(s)	281
BfaI	CTAG	2 cut(s)	305, 348
BfmI	CTRYAG	1 cut(s)	13
BisI	GCNGC	1 cut(s)	327
BlnI	CCTAGG	1 cut(s)	304
BlpI	GCTNAGC	1 cut(s)	172
BlsI	GCNGC	1 cut(s)	328
Bme1390I	CCNGG	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	277
BmrFI	CCNGG	1 cut(s)	281
BmsI	GCATC	1 cut(s)	210
BpiI	GAAGAC	1 cut(s)	224
Bpu1102I	GCTNAGC	1 cut(s)	172
Bsa29I	ATCGAT	1 cut(s)	204
BsaHI	GRCGYC	1 cut(s)	149
BsaJI	CCNNGG	4 cut(s)	185, 196, 279, 304
BseBI	CCWGG	1 cut(s)	281
BseCI	ATCGAT	1 cut(s)	204
BseDI	CCNNGG	4 cut(s)	185, 196, 279, 304
BseMII	CTCAG	1 cut(s)	71
BseRI	GAGGAG	1 cut(s)	145
BseXI	GCAGC	1 cut(s)	313
Bsh1236I	CGCG	1 cut(s)	291
BshFI	GGCC	2 cut(s)	31, 278
BshVI	ATCGAT	1 cut(s)	204
BsnI	GGCC	2 cut(s)	31, 278
Bsp143I	GATC	2 cut(s)	292, 308
Bsp1720I	GCTNAGC	1 cut(s)	172
Bsp19I	CCATGG	1 cut(s)	185
Bsp68I	TCGCGA	1 cut(s)	291
BspACI	CCGC	2 cut(s)	8, 182
BspANI	GGCC	2 cut(s)	31, 278
BspCNI	CTCAG	1 cut(s)	72
BspDI	ATCGAT	1 cut(s)	204
BspFNI	CGCG	1 cut(s)	291
BspPI	GGATC	1 cut(s)	316
BssECI	CCNNGG	4 cut(s)	185, 196, 279, 304
BssMI	GATC	2 cut(s)	292, 308
BssNI	GRCGYC	1 cut(s)	149
BssT1I	CCWWGG	3 cut(s)	185, 196, 304
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	1 cut(s)	14
BstACI	GRCGYC	1 cut(s)	149
BstDEI	CTNAG	2 cut(s)	80, 172
BstDSI	CCRYGG	1 cut(s)	185
BstFNI	CGCG	1 cut(s)	291
BstHHI	GCGC	1 cut(s)	326
BstKTI	GATC	2 cut(s)	295, 311
BstMBI	GATC	2 cut(s)	292, 308
BstNI	CCWGG	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	279
BstSFI	CTRYAG	1 cut(s)	13
BstUI	CGCG	1 cut(s)	291
BstV1I	GCAGC	1 cut(s)	313
BstV2I	GAAGAC	1 cut(s)	224
Bsu15I	ATCGAT	1 cut(s)	204
BsuRI	GGCC	2 cut(s)	31, 278
BsuTUI	ATCGAT	1 cut(s)	204
BtgI	CCRYGG	1 cut(s)	185
BtuMI	TCGCGA	1 cut(s)	291
CfoI	GCGC	1 cut(s)	326
Cfr13I	GGNCC	1 cut(s)	277
ClaI	ATCGAT	1 cut(s)	204
CviAII	CATG	4 cut(s)	137, 186, 212, 274
CviJI	RGCY	4 cut(s)	31, 190, 216, 278
CviKI_1	RGCY	4 cut(s)	31, 190, 216, 278
DdeI	CTNAG	2 cut(s)	80, 172
DpnI	GATC	2 cut(s)	294, 310
DpnII	GATC	2 cut(s)	292, 308
EaeI	YGGCCR	1 cut(s)	29
EciI	GGCGGA	1 cut(s)	23
Eco130I	CCWWGG	3 cut(s)	185, 196, 304
EcoRI	GAATTC	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	279
EcoT14I	CCWWGG	3 cut(s)	185, 196, 304
ErhI	CCWWGG	3 cut(s)	185, 196, 304
FaeI	CATG	4 cut(s)	140, 189, 215, 277
FaiI	YATR	5 cut(s)	89, 138, 187, 213, 275
FatI	CATG	4 cut(s)	136, 185, 211, 273
FblI	GTMKAC	1 cut(s)	132
Fnu4HI	GCNGC	1 cut(s)	327
Fsp4HI	GCNGC	1 cut(s)	327
FspBI	CTAG	2 cut(s)	305, 348
GlaI	GCGC	1 cut(s)	325
GluI	GCNGC	1 cut(s)	327
HaeIII	GGCC	2 cut(s)	31, 278
HhaI	GCGC	1 cut(s)	326
Hin1I	GRCGYC	1 cut(s)	149
Hin1II	CATG	4 cut(s)	140, 189, 215, 277
Hin6I	GCGC	1 cut(s)	324
HinP1I	GCGC	1 cut(s)	324
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	1 cut(s)	262
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	1 cut(s)	267
Hpy188III	TCNNGA	3 cut(s)	239, 290, 315
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	1 cut(s)	127
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4IV	ACGT	1 cut(s)	149
HpyF3I	CTNAG	2 cut(s)	80, 172
HpySE526I	ACGT	1 cut(s)	149
Hsp92I	GRCGYC	1 cut(s)	149
Hsp92II	CATG	4 cut(s)	140, 189, 215, 277
HspAI	GCGC	1 cut(s)	324
Kzo9I	GATC	2 cut(s)	292, 308
LpnPI	CCDG	6 cut(s)	45, 92, 224, 266, 293, 328
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	1 cut(s)	210
MaeI	CTAG	2 cut(s)	305, 348
MaeII	ACGT	1 cut(s)	149
MaeIII	GTNAC	2 cut(s)	83, 141
MalI	GATC	2 cut(s)	294, 310
MboI	GATC	2 cut(s)	292, 308
MboII	GAAGA	1 cut(s)	224
MlsI	TGGCCA	1 cut(s)	31
MluCI	AATT	4 cut(s)	25, 56, 71, 242
MluNI	TGGCCA	1 cut(s)	31
MnlI	CCTC	3 cut(s)	163, 166, 311
Mox20I	TGGCCA	1 cut(s)	31
MscI	TGGCCA	1 cut(s)	31
MseI	TTAA	1 cut(s)	355
Msp20I	TGGCCA	1 cut(s)	31
MspR9I	CCNGG	1 cut(s)	281
MvaI	CCWGG	1 cut(s)	281
MvnI	CGCG	1 cut(s)	291
NcoI	CCATGG	1 cut(s)	185
NdeII	GATC	2 cut(s)	292, 308
NlaIII	CATG	4 cut(s)	140, 189, 215, 277
NruI	TCGCGA	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	262
PkrI	GCNGC	1 cut(s)	328
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspPI	GGNCC	1 cut(s)	277
RruI	TCGCGA	1 cut(s)	291
SalI	GTCGAC	1 cut(s)	131
SaqAI	TTAA	1 cut(s)	355
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	2 cut(s)	292, 308
Sau96I	GGNCC	1 cut(s)	277
ScrFI	CCNGG	1 cut(s)	281
SetI	ASST	4 cut(s)	51, 152, 198, 322
SfaNI	GCATC	1 cut(s)	210
SfcI	CTRYAG	1 cut(s)	13
Sse9I	AATT	4 cut(s)	25, 56, 71, 242
SsiI	CCGC	2 cut(s)	8, 182
SspMI	CTAG	2 cut(s)	305, 348
StyD4I	CCNGG	1 cut(s)	279
StyI	CCWWGG	3 cut(s)	185, 196, 304
TaaI	ACNGT	1 cut(s)	14
TaiI	ACGT	1 cut(s)	152
TaqI	TCGA	2 cut(s)	132, 204
TasI	AATT	4 cut(s)	25, 56, 71, 242
TfiI	GAWTC	1 cut(s)	262
Tru1I	TTAA	1 cut(s)	355
Tru9I	TTAA	1 cut(s)	355
TseI	GCWGC	1 cut(s)	326
TspDTI	ATGAA	1 cut(s)	224
XapI	RAATTY	1 cut(s)	242
XmaJI	CCTAGG	1 cut(s)	304
XmiI	GTMKAC	1 cut(s)	132
XspI	CTAG	2 cut(s)	305, 348
ZraI	GACGTC	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.