Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004225

Physical Location & Seq

Genomic Coordinates Forward (+)

4049330 .. 4049862

Gene Structure 533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g04632.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGGGTGTGATAATGAGTTCTATGTCCTGATGGAGGACGATAGTGTTGATGTCTGGGATTTCAGCATATCTTCCATTCCCATGAAGAATATGGAGATAAAACCTGCACATGCATTAGTTGCAGGACTAAGAAGGTTTCATCAAGTTTACATGCACAAAACAGCGGGGACTGGTCTAATGCTGGTAGCAGTGGATTTACGGTCTCCACTGGATCGCGATCTACTCCATGTTTATAAGCTGGAAGGGACATCTCCTGTGTGGAAGGAGGTGGAATCGATTGGGAGTAATGCCTTGGTTTTAGGTTCGAACAATTCCATAGTAATGTCACACCATGATCCCTACGCTGTGATGGTGATTCAATTTACTATGGGAAGCAGTCAGCACCTAGATCTTGGAACTTATATGAAGGGAAAATGCAGTACCGGAAGGTGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

146

Amino Acids

16.22

Weight (kDa)

5.92

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	4 - 112	4.2e-10	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004225)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15921 FvH4_4g04632 FvH4_4g05202 FvH4_4g05500 FvH4_7g24700
prunus_persica	Prupe.1G052900_v2.0.a1 Prupe.1G053000_v2.0.a1
rosa_laevigata	RLG00000032962
rosa_multiflora	Rmu_sc0002021.1_g000018 Rmu_sc0004598.1_g000005 Rmu_sc0010817.1_g000006 Rmu_sc0021895.1_g000002 Rmu_sc0021895.1_g000003
rosa_roxburghii	Rroxscaffold_1G00052700 Rroxscaffold_4G00286440
rosa_rugosa	Rorug03G0352300 Rorug03G0357300
rosa_samantha	Rh1AG366800 Rh1BG330300 Rh1CG343200 Rh1CG344600 Rh1DG361800 Rh4AG059700 Rh4BG058300 Rh4CG064000 Rh4DG054900 Rh4DG061400 Rh4DG061600 Rh5BG185200 Rh5CG205200
rosa_wichuraiana	Rw1G032280 Rw4G004780 Rw5G017140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	234
Acc36I	ACCTGC	1 cut(s)	112
AccII	CGCG	1 cut(s)	216
AciI	CCGC	1 cut(s)	164
AclWI	GGATC	2 cut(s)	219, 329
AfaI	GTAC	1 cut(s)	421
AfiI	CCNNNNNNNGG	2 cut(s)	34, 429
AgsI	TTSAA	1 cut(s)	359
AluBI	AGCT	1 cut(s)	238
AluI	AGCT	1 cut(s)	238
Alw26I	GTCTC	1 cut(s)	207
AlwI	GGATC	2 cut(s)	219, 329
AsuHPI	GGTGA	1 cut(s)	364
AsuII	TTCGAA	1 cut(s)	305
BccI	CCATC	2 cut(s)	25, 343
BcoDI	GTCTC	1 cut(s)	207
BfaI	CTAG	1 cut(s)	386
BfuAI	ACCTGC	1 cut(s)	112
BglII	AGATCT	1 cut(s)	388
Bpu14I	TTCGAA	1 cut(s)	305
Bsa29I	ATCGAT	1 cut(s)	275
BsaBI	GATNNNNATC	1 cut(s)	216
BsaI	GGTCTC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	291
BsaWI	WCCGGW	1 cut(s)	422
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 429
Bse1I	ACTGG	2 cut(s)	175, 213
Bse8I	GATNNNNATC	1 cut(s)	216
BseCI	ATCGAT	1 cut(s)	275
BseDI	CCNNGG	1 cut(s)	291
BseJI	GATNNNNATC	1 cut(s)	216
BseLI	CCNNNNNNNGG	2 cut(s)	34, 429
BseNI	ACTGG	2 cut(s)	175, 213
BsgI	GTGCAG	1 cut(s)	90
Bsh1236I	CGCG	1 cut(s)	216
BshVI	ATCGAT	1 cut(s)	275
BsiSI	CCGG	1 cut(s)	423
BslFI	GGGAC	2 cut(s)	181, 259
BslI	CCNNNNNNNGG	2 cut(s)	34, 429
BsmAI	GTCTC	1 cut(s)	207
BsmFI	GGGAC	2 cut(s)	181, 259
Bso31I	GGTCTC	1 cut(s)	207
Bsp119I	TTCGAA	1 cut(s)	305
Bsp143I	GATC	4 cut(s)	211, 217, 334, 388
Bsp68I	TCGCGA	1 cut(s)	216
BspACI	CCGC	1 cut(s)	164
BspDI	ATCGAT	1 cut(s)	275
BspFNI	CGCG	1 cut(s)	216
BspMI	ACCTGC	1 cut(s)	112
BspPI	GGATC	2 cut(s)	219, 329
BspT104I	TTCGAA	1 cut(s)	305
BspTNI	GGTCTC	1 cut(s)	207
BsrI	ACTGG	2 cut(s)	175, 213
BssECI	CCNNGG	1 cut(s)	291
BssMI	GATC	4 cut(s)	211, 217, 334, 388
BssT1I	CCWWGG	1 cut(s)	291
Bst4CI	ACNGT	1 cut(s)	201
BstAPI	GCANNNNNTGC	1 cut(s)	119
BstBI	TTCGAA	1 cut(s)	305
BstDEI	CTNAG	1 cut(s)	128
BstENI	CCTNNNNNAGG	1 cut(s)	32
BstFNI	CGCG	1 cut(s)	216
BstKTI	GATC	4 cut(s)	214, 220, 337, 391
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	4 cut(s)	211, 217, 334, 388
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNSI	RCATGY	2 cut(s)	113, 154
BstUI	CGCG	1 cut(s)	216
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
Bsu15I	ATCGAT	1 cut(s)	275
BsuTUI	ATCGAT	1 cut(s)	275
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	2 cut(s)	195, 206
BtuMI	TCGCGA	1 cut(s)	216
BveI	ACCTGC	1 cut(s)	112
ClaI	ATCGAT	1 cut(s)	275
Csp6I	GTAC	1 cut(s)	420
CviAII	CATG	5 cut(s)	82, 110, 151, 227, 332
CviJI	RGCY	2 cut(s)	238, 433
CviKI_1	RGCY	2 cut(s)	238, 433
CviQI	GTAC	1 cut(s)	420
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	4 cut(s)	213, 219, 336, 390
DpnII	GATC	4 cut(s)	211, 217, 334, 388
Eco130I	CCWWGG	1 cut(s)	291
Eco31I	GGTCTC	1 cut(s)	207
EcoNI	CCTNNNNNAGG	1 cut(s)	32
EcoT14I	CCWWGG	1 cut(s)	291
EcoT22I	ATGCAT	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	291
FaeI	CATG	5 cut(s)	85, 113, 154, 230, 335
FaqI	GGGAC	2 cut(s)	181, 259
FatI	CATG	5 cut(s)	81, 109, 150, 226, 331
FauI	CCCGC	1 cut(s)	157
FspBI	CTAG	1 cut(s)	386
HapII	CCGG	1 cut(s)	423
Hin1II	CATG	5 cut(s)	85, 113, 154, 230, 335
HinfI	GANTC	2 cut(s)	272, 355
HpaII	CCGG	1 cut(s)	423
HphI	GGTGA	1 cut(s)	364
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188III	TCNNGA	2 cut(s)	28, 215
Hpy8I	GTNNAC	1 cut(s)	148
HpyAV	CCTTC	5 cut(s)	126, 236, 256, 400, 420
HpyCH4III	ACNGT	1 cut(s)	201
HpyCH4V	TGCA	5 cut(s)	107, 113, 122, 154, 417
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	1 cut(s)	128
Hsp92II	CATG	5 cut(s)	85, 113, 154, 230, 335
Kzo9I	GATC	4 cut(s)	211, 217, 334, 388
LpnPI	CCDG	9 cut(s)	40, 41, 108, 117, 156, 167, 194, 224, 267
MaeI	CTAG	1 cut(s)	386
MaeIII	GTNAC	1 cut(s)	324
MalI	GATC	4 cut(s)	213, 219, 336, 390
MboI	GATC	4 cut(s)	211, 217, 334, 388
MboII	GAAGA	2 cut(s)	63, 97
MflI	RGATCY	1 cut(s)	388
MluCI	AATT	2 cut(s)	310, 359
MnlI	CCTC	2 cut(s)	28, 259
Mph1103I	ATGCAT	1 cut(s)	115
MslI	CAYNNNNRTG	2 cut(s)	80, 320
MspA1I	CMGCKG	1 cut(s)	164
MspI	CCGG	1 cut(s)	423
MvnI	CGCG	1 cut(s)	216
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeII	GATC	4 cut(s)	211, 217, 334, 388
NlaIII	CATG	5 cut(s)	85, 113, 154, 230, 335
NmuCI	GTSAC	1 cut(s)	324
NruI	TCGCGA	1 cut(s)	216
NsiI	ATGCAT	1 cut(s)	115
NspI	RCATGY	2 cut(s)	113, 154
NspV	TTCGAA	1 cut(s)	305
PfeI	GAWTC	2 cut(s)	272, 355
PsiI	TTATAA	1 cut(s)	234
PsuI	RGATCY	1 cut(s)	388
RruI	TCGCGA	1 cut(s)	216
RsaI	GTAC	1 cut(s)	421
RsaNI	GTAC	1 cut(s)	420
RseI	CAYNNNNRTG	2 cut(s)	80, 320
Sau3AI	GATC	4 cut(s)	211, 217, 334, 388
SetI	ASST	7 cut(s)	106, 137, 240, 270, 304, 387, 431
SfuI	TTCGAA	1 cut(s)	305
SmiMI	CAYNNNNRTG	2 cut(s)	80, 320
Sse9I	AATT	2 cut(s)	310, 359
SsiI	CCGC	1 cut(s)	164
SspMI	CTAG	1 cut(s)	386
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	1 cut(s)	201
TaqI	TCGA	2 cut(s)	275, 305
TasI	AATT	2 cut(s)	310, 359
TfiI	GAWTC	2 cut(s)	272, 355
TscAI	CASTG	2 cut(s)	195, 213
TseFI	GTSAC	1 cut(s)	324
Tsp45I	GTSAC	1 cut(s)	324
TspDTI	ATGAA	3 cut(s)	98, 128, 419
TspRI	CASTG	2 cut(s)	195, 213
XagI	CCTNNNNNAGG	1 cut(s)	32
XceI	RCATGY	2 cut(s)	113, 154
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88
XspI	CTAG	1 cut(s)	386
Zsp2I	ATGCAT	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.