RLG00000009571

Small acidic protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0014128
Physical Location & Seq
Reverse (-)
54752462 .. 54752770
309 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009571

Sequence Viewer

Length: 309 bp
ATGTCGTCCTTCACAAGACAAAAGGCGAGCTCTCCAGCCGAAATCCAATACGCTCGACGCTCTGCGGCTCTAGCTTCAGCGAGACAGAGAAGATCTACGGCGGCGGCGACGACGACGATGAGGCCGACGGCGATGGAGTTCTTCAGCGACATGGAAGACCAGGGCTCCACCATGGCCATGGACGTCGACGACATCGACGCCCTCGAGATCTTCGGCGGCGACGGCGTCATCGGAGAGAACAAGCTCGCCGACCTCGACTTCTTCAACTCTTTCCCCGACGACTTCGACGAGTCCGACATGATCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.21

Weight (kDa)

4.15

Isoelectric Point (pI)

59.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014128)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24280 AT4G13520 AT4G13520
fragaria_vesca FvH4_4g05200 FvH4_4g05200
prunus_persica Prupe.1G052700_v2.0.a1
pyrus_communis pycom16g19280
rosa_chinensis RchiOBHm_Chr4g0396111
rosa_laevigata RLG00000009571
rosa_multiflora Rmu_co8348141.1_g000001 Rmu_sc0007010.1_g000012 Rmu_sc0009634.1_g000009
rosa_roxburghii Rroxscaffold_5G00340910
rosa_rugosa Rorug03G0352300
rosa_samantha Rh4BG064300 Rh4CG070900
rosa_wichuraiana Rw4G005340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 186
AccI GTMKAC 1 cut(s) 186
AciI CCGC 4 cut(s) 65, 101, 104, 216
AcoI YGGCCR 1 cut(s) 174
AcuI CTGAAG 2 cut(s) 60, 127
AcyI GRCGYC 3 cut(s) 183, 198, 225
AgsI TTSAA 1 cut(s) 265
AjnI CCWGG 1 cut(s) 159
AluBI AGCT 3 cut(s) 30, 74, 244
AluI AGCT 3 cut(s) 30, 74, 244
Alw21I GWGCWC 1 cut(s) 32
Alw26I GTCTC 1 cut(s) 76
Ama87I CYCGRG 1 cut(s) 203
AoxI GGCC 2 cut(s) 122, 174
AvaI CYCGRG 1 cut(s) 203
BalI TGGCCA 1 cut(s) 176
BanII GRGCYC 2 cut(s) 32, 167
BbsI GAAGAC 1 cut(s) 162
Bbv12I GWGCWC 1 cut(s) 32
BccI CCATC 1 cut(s) 127
BceAI ACGGC 3 cut(s) 114, 144, 238
BciT130I CCWGG 1 cut(s) 161
BclI TGATCA 1 cut(s) 300
BcoDI GTCTC 1 cut(s) 76
BfaI CTAG 2 cut(s) 71, 307
BglII AGATCT 2 cut(s) 92, 207
BisI GCNGC 4 cut(s) 66, 102, 105, 217
BlsI GCNGC 4 cut(s) 67, 103, 106, 218
Bme1390I CCNGG 1 cut(s) 161
BmeT110I CYCGRG 1 cut(s) 203
BmiI GGNNCC 1 cut(s) 166
BmrFI CCNGG 1 cut(s) 161
BpiI GAAGAC 1 cut(s) 162
BpmI CTGGAG 1 cut(s) 18
BsaHI GRCGYC 3 cut(s) 183, 198, 225
BsaJI CCNNGG 3 cut(s) 160, 171, 177
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
BseBI CCWGG 1 cut(s) 161
BseDI CCNNGG 3 cut(s) 160, 171, 177
BshFI GGCC 2 cut(s) 124, 176
BsiHKAI GWGCWC 1 cut(s) 32
BsiHKCI CYCGRG 1 cut(s) 203
BsmAI GTCTC 1 cut(s) 76
BsnI GGCC 2 cut(s) 124, 176
BsoBI CYCGRG 1 cut(s) 203
Bsp1286I GDGCHC 2 cut(s) 32, 167
Bsp143I GATC 3 cut(s) 92, 207, 300
Bsp19I CCATGG 2 cut(s) 171, 177
BspACI CCGC 4 cut(s) 65, 101, 104, 216
BspANI GGCC 2 cut(s) 124, 176
BspLI GGNNCC 1 cut(s) 166
BssECI CCNNGG 3 cut(s) 160, 171, 177
BssMI GATC 3 cut(s) 92, 207, 300
BssNI GRCGYC 3 cut(s) 183, 198, 225
BssT1I CCWWGG 2 cut(s) 171, 177
Bst2UI CCWGG 1 cut(s) 161
BstACI GRCGYC 3 cut(s) 183, 198, 225
BstC8I GCNNGC 2 cut(s) 28, 246
BstDSI CCRYGG 2 cut(s) 171, 177
BstKTI GATC 3 cut(s) 95, 210, 303
BstMAI GTCTC 1 cut(s) 76
BstMBI GATC 3 cut(s) 92, 207, 300
BstMWI GCNNNNNNNGC 2 cut(s) 71, 222
BstNI CCWGG 1 cut(s) 161
BstSCI CCNGG 1 cut(s) 159
BstV2I GAAGAC 1 cut(s) 162
BstX2I RGATCY 2 cut(s) 92, 207
BstXI CCANNNNNNTGG 1 cut(s) 178
BstYI RGATCY 2 cut(s) 92, 207
BsuRI GGCC 2 cut(s) 124, 176
BtgI CCRYGG 2 cut(s) 171, 177
BtgZI GCGATG 1 cut(s) 146
Cac8I GCNNGC 2 cut(s) 28, 246
CseI GACGC 3 cut(s) 66, 206, 214
CviAII CATG 4 cut(s) 151, 172, 178, 298
CviJI RGCY 8 cut(s) 30, 38, 68, 74, 124, 165, 176, 244
CviKI_1 RGCY 8 cut(s) 30, 38, 68, 74, 124, 165, 176, 244
DpnI GATC 3 cut(s) 94, 209, 302
DpnII GATC 3 cut(s) 92, 207, 300
EaeI YGGCCR 1 cut(s) 174
Ecl136II GAGCTC 1 cut(s) 30
Eco130I CCWWGG 2 cut(s) 171, 177
Eco24I GRGCYC 2 cut(s) 32, 167
Eco53kI GAGCTC 1 cut(s) 30
Eco57I CTGAAG 2 cut(s) 60, 127
Eco88I CYCGRG 1 cut(s) 203
EcoICRI GAGCTC 1 cut(s) 30
EcoRII CCWGG 1 cut(s) 159
EcoT14I CCWWGG 2 cut(s) 171, 177
EcoT38I GRGCYC 2 cut(s) 32, 167
ErhI CCWWGG 2 cut(s) 171, 177
FaeI CATG 4 cut(s) 154, 175, 181, 301
FaiI YATR 4 cut(s) 152, 173, 179, 299
FatI CATG 4 cut(s) 150, 171, 177, 297
FbaI TGATCA 1 cut(s) 300
FblI GTMKAC 1 cut(s) 186
Fnu4HI GCNGC 4 cut(s) 66, 102, 105, 217
FriOI GRGCYC 2 cut(s) 32, 167
Fsp4HI GCNGC 4 cut(s) 66, 102, 105, 217
FspBI CTAG 2 cut(s) 71, 307
GluI GCNGC 4 cut(s) 66, 102, 105, 217
GsuI CTGGAG 1 cut(s) 18
HaeIII GGCC 2 cut(s) 124, 176
HgaI GACGC 3 cut(s) 66, 206, 214
Hin1I GRCGYC 3 cut(s) 183, 198, 225
Hin1II CATG 4 cut(s) 154, 175, 181, 301
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HinfI GANTC 1 cut(s) 290
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 2 cut(s) 233, 295
Hpy188III TCNNGA 1 cut(s) 205
Hpy8I GTNNAC 1 cut(s) 187
HpyAV CCTTC 1 cut(s) 19
HpyCH4IV ACGT 1 cut(s) 183
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 222
HpySE526I ACGT 1 cut(s) 183
Hsp92I GRCGYC 3 cut(s) 183, 198, 225
Hsp92II CATG 4 cut(s) 154, 175, 181, 301
Ksp22I TGATCA 1 cut(s) 300
Kzo9I GATC 3 cut(s) 92, 207, 300
LmnI GCTCC 1 cut(s) 170
LpnPI CCDG 3 cut(s) 48, 146, 173
MaeI CTAG 2 cut(s) 71, 307
MaeII ACGT 1 cut(s) 183
MalI GATC 3 cut(s) 94, 209, 302
MboI GATC 3 cut(s) 92, 207, 300
MboII GAAGA 5 cut(s) 102, 133, 167, 202, 253
MflI RGATCY 2 cut(s) 92, 207
MhlI GDGCHC 2 cut(s) 32, 167
MlsI TGGCCA 1 cut(s) 176
MluNI TGGCCA 1 cut(s) 176
MlyI GAGTC 1 cut(s) 299
MnlI CCTC 3 cut(s) 114, 212, 263
Mox20I TGGCCA 1 cut(s) 176
MscI TGGCCA 1 cut(s) 176
MslI CAYNNNNRTG 1 cut(s) 176
Msp20I TGGCCA 1 cut(s) 176
MspR9I CCNGG 1 cut(s) 161
MvaI CCWGG 1 cut(s) 161
MwoI GCNNNNNNNGC 2 cut(s) 71, 222
NcoI CCATGG 2 cut(s) 171, 177
NdeII GATC 3 cut(s) 92, 207, 300
NlaIII CATG 4 cut(s) 154, 175, 181, 301
NlaIV GGNNCC 1 cut(s) 166
PaeR7I CTCGAG 1 cut(s) 203
PcsI WCGNNNNNNNCGW 7 cut(s) 104, 122, 192, 201, 252, 285, 291
PflFI GACNNNGTC 1 cut(s) 224
PkrI GCNGC 4 cut(s) 67, 103, 106, 218
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
Psp124BI GAGCTC 1 cut(s) 32
Psp6I CCWGG 1 cut(s) 159
PspGI CCWGG 1 cut(s) 159
PspN4I GGNNCC 1 cut(s) 166
PsuI RGATCY 2 cut(s) 92, 207
PsyI GACNNNGTC 1 cut(s) 224
RseI CAYNNNNRTG 1 cut(s) 176
SacI GAGCTC 1 cut(s) 32
SalI GTCGAC 1 cut(s) 185
SatI GCNGC 4 cut(s) 66, 102, 105, 217
Sau3AI GATC 3 cut(s) 92, 207, 300
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 1 cut(s) 161
SduI GDGCHC 2 cut(s) 32, 167
SetI ASST 5 cut(s) 32, 76, 186, 246, 255
Sfr274I CTCGAG 1 cut(s) 203
SgrDI CGTCGACG 1 cut(s) 185
SlaI CTCGAG 1 cut(s) 203
SmiMI CAYNNNNRTG 1 cut(s) 176
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
SsiI CCGC 4 cut(s) 65, 101, 104, 216
SspMI CTAG 2 cut(s) 71, 307
SstI GAGCTC 1 cut(s) 32
StyD4I CCNGG 1 cut(s) 159
StyI CCWWGG 2 cut(s) 171, 177
TaiI ACGT 1 cut(s) 186
TaqI TCGA 6 cut(s) 55, 186, 195, 204, 255, 285
TauI GCSGC 4 cut(s) 68, 104, 107, 219
Tth111I GACNNNGTC 1 cut(s) 224
XcmI CCANNNNNNNNNTGG 1 cut(s) 175
XhoI CTCGAG 1 cut(s) 203
XmiI GTMKAC 1 cut(s) 186
XspI CTAG 2 cut(s) 71, 307
ZraI GACGTC 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.