Prupe.1G060200_v2.0.a1

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017508
Physical Location & Seq
Reverse (-)
4246092 .. 4246358
267 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G060200.1

Sequence Viewer

Length: 267 bp
TGCCAAGCCGCCGGCGTGGATCCAAGCCAGCATTCGATTCTATTTTTACATGACTTTACCTGGAACGTCAACCCTAGCACTGTGTTGTCTTGTGACATGAGTTGGGGTTGGGGAAATGTAAATGGGCATTTCGACATCTTTGATGCTAAAAGAGATTCAACTAGGTGTTCCAGAAATTTCTGCGCTTGGCGTGTGAAGCAGGATGGCTTGTATCTCTTCATCGAGGCGCATAAGAGGTTGGAGTTGCAGTTTACATGGCCTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

89

Amino Acids

10.26

Weight (kDa)

6.54

Isoelectric Point (pI)

47.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017508)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24065 AT3G24068
prunus_persica Prupe.1G060200_v2.0.a1
pyrus_communis pycom16g19650
rosa_chinensis RchiOBHm_Chr4g0396871
rosa_laevigata RLG00000009498
rosa_rugosa Rorug03G0346800
rosa_samantha Rh4AG074200 Rh4BG070900 Rh4CG079000 Rh4DG068200
rosa_wichuraiana Rw4G005970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 9
AclWI GGATC 2 cut(s) 14, 27
AcsI RAATTY 1 cut(s) 175
AgsI TTSAA 1 cut(s) 159
AjnI CCWGG 1 cut(s) 59
AjuI GAANNNNNNNTTGG 2 cut(s) 16, 48
AlwI GGATC 2 cut(s) 14, 27
AoxI GGCC 1 cut(s) 257
ApoI RAATTY 1 cut(s) 175
AspLEI GCGC 2 cut(s) 185, 229
BamHI GGATCC 1 cut(s) 19
BccI CCATC 1 cut(s) 197
BciT130I CCWGG 1 cut(s) 61
BfaI CTAG 2 cut(s) 75, 162
BisI GCNGC 1 cut(s) 9
BlsI GCNGC 1 cut(s) 10
Bme1390I CCNGG 1 cut(s) 61
BmiI GGNNCC 1 cut(s) 21
BmrFI CCNGG 1 cut(s) 61
BmsI GCATC 1 cut(s) 133
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bse118I RCCGGY 1 cut(s) 11
BseBI CCWGG 1 cut(s) 61
BseGI GGATG 1 cut(s) 208
BshFI GGCC 1 cut(s) 259
BsiSI CCGG 1 cut(s) 12
BsmI GAATGC 1 cut(s) 31
BsnI GGCC 1 cut(s) 259
Bsp143I GATC 1 cut(s) 19
BspACI CCGC 1 cut(s) 9
BspANI GGCC 1 cut(s) 259
BspLI GGNNCC 1 cut(s) 21
BspPI GGATC 2 cut(s) 14, 27
BsrFI RCCGGY 1 cut(s) 11
BssAI RCCGGY 1 cut(s) 11
BssMI GATC 1 cut(s) 19
Bst2UI CCWGG 1 cut(s) 61
Bst4CI ACNGT 1 cut(s) 82
Bst6I CTCTTC 1 cut(s) 221
BstC8I GCNNGC 2 cut(s) 13, 29
BstF5I GGATG 1 cut(s) 208
BstHHI GCGC 2 cut(s) 185, 229
BstKTI GATC 1 cut(s) 22
BstMBI GATC 1 cut(s) 19
BstMWI GCNNNNNNNGC 1 cut(s) 196
BstNI CCWGG 1 cut(s) 61
BstSCI CCNGG 1 cut(s) 59
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
BsuRI GGCC 1 cut(s) 259
BtsCI GGATG 1 cut(s) 208
BtsIMutI CAGTG 2 cut(s) 78, 262
Cac8I GCNNGC 2 cut(s) 13, 29
CfoI GCGC 2 cut(s) 185, 229
Cfr10I RCCGGY 1 cut(s) 11
CviAII CATG 3 cut(s) 50, 97, 255
CviJI RGCY 4 cut(s) 8, 27, 207, 259
CviKI_1 RGCY 4 cut(s) 8, 27, 207, 259
DpnI GATC 1 cut(s) 21
DpnII GATC 1 cut(s) 19
Eam1104I CTCTTC 1 cut(s) 221
EarI CTCTTC 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 59
FaeI CATG 3 cut(s) 53, 100, 258
FaiI YATR 4 cut(s) 51, 98, 231, 256
FatI CATG 3 cut(s) 49, 96, 254
Fnu4HI GCNGC 1 cut(s) 9
FokI GGATG 1 cut(s) 215
Fsp4HI GCNGC 1 cut(s) 9
FspBI CTAG 2 cut(s) 75, 162
GlaI GCGC 2 cut(s) 184, 228
GluI GCNGC 1 cut(s) 9
HaeIII GGCC 1 cut(s) 259
HapII CCGG 1 cut(s) 12
HhaI GCGC 2 cut(s) 185, 229
Hin1II CATG 3 cut(s) 53, 100, 258
Hin6I GCGC 2 cut(s) 183, 227
HinP1I GCGC 2 cut(s) 183, 227
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HinfI GANTC 2 cut(s) 37, 155
HpaII CCGG 1 cut(s) 12
Hpy166II GTNNAC 2 cut(s) 70, 252
Hpy188III TCNNGA 1 cut(s) 171
Hpy8I GTNNAC 2 cut(s) 70, 252
HpyCH4III ACNGT 1 cut(s) 82
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 1 cut(s) 247
HpyF10VI GCNNNNNNNGC 1 cut(s) 196
HpySE526I ACGT 1 cut(s) 66
Hsp92II CATG 3 cut(s) 53, 100, 258
HspAI GCGC 2 cut(s) 183, 227
KroI GCCGGC 1 cut(s) 11
KroNI GCCGGC 1 cut(s) 13
Kzo9I GATC 1 cut(s) 19
LpnPI CCDG 6 cut(s) 25, 41, 46, 73, 184, 185
LweI GCATC 1 cut(s) 133
MaeI CTAG 2 cut(s) 75, 162
MaeII ACGT 1 cut(s) 66
MaeIII GTNAC 1 cut(s) 92
MalI GATC 1 cut(s) 21
MboI GATC 1 cut(s) 19
MboII GAAGA 1 cut(s) 208
MflI RGATCY 1 cut(s) 19
MluCI AATT 1 cut(s) 175
MmeI TCCRAC 1 cut(s) 219
MnlI CCTC 2 cut(s) 217, 228
MreI CGCCGGCG 1 cut(s) 11
MroNI GCCGGC 1 cut(s) 11
MspI CCGG 1 cut(s) 12
MspR9I CCNGG 1 cut(s) 61
Mva1269I GAATGC 1 cut(s) 31
MvaI CCWGG 1 cut(s) 61
MwoI GCNNNNNNNGC 1 cut(s) 196
NaeI GCCGGC 1 cut(s) 13
NdeII GATC 1 cut(s) 19
NgoMIV GCCGGC 1 cut(s) 11
NlaIII CATG 3 cut(s) 53, 100, 258
NlaIV GGNNCC 1 cut(s) 21
NmuCI GTSAC 1 cut(s) 92
PctI GAATGC 1 cut(s) 31
PdiI GCCGGC 1 cut(s) 13
PfeI GAWTC 2 cut(s) 37, 155
PkrI GCNGC 1 cut(s) 10
Psp6I CCWGG 1 cut(s) 59
PspGI CCWGG 1 cut(s) 59
PspN4I GGNNCC 1 cut(s) 21
PsuI RGATCY 1 cut(s) 19
SatI GCNGC 1 cut(s) 9
Sau3AI GATC 1 cut(s) 19
ScrFI CCNGG 1 cut(s) 61
SetI ASST 4 cut(s) 62, 69, 167, 239
SfaNI GCATC 1 cut(s) 133
SgrAI CRCCGGYG 1 cut(s) 11
Sse9I AATT 1 cut(s) 175
SsiI CCGC 1 cut(s) 9
SspMI CTAG 2 cut(s) 75, 162
StyD4I CCNGG 1 cut(s) 59
TaaI ACNGT 1 cut(s) 82
TaiI ACGT 1 cut(s) 69
TaqI TCGA 3 cut(s) 35, 132, 222
TasI AATT 1 cut(s) 175
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 2 cut(s) 37, 155
TscAI CASTG 1 cut(s) 85
TseFI GTSAC 1 cut(s) 92
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 1 cut(s) 208
TspRI CASTG 1 cut(s) 85
XapI RAATTY 1 cut(s) 175
XspI CTAG 2 cut(s) 75, 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.