Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006689

Physical Location & Seq

Genomic Coordinates Forward (+)

42060187 .. 42065115

Gene Structure 4929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0346800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2298 bp

ATGGCGTCTCACATTGTTGGATACCCTCGTATGGGCCCCAAGAGAGAGCTCAAGTTTGCCTTGGAATCTTTCTGGGATCGCAAGAGCAGTGCCGAAGATTTGCAAAAGGTGTCTGCTGATCTCAGGTCTTCCATCTGGAAGCAGATGGCTGATGCCGGGATCATGCACATTCCCAGCAACACTTTCTCTTACTACGACCAGGTGCTTGACACCACTGCAATGCTTGGGGCAGTTCCACCAAGATATGGTTGGAATGGTGGTGAGATTGGATTTGACACTTATTTCTCCATGGCCAGAGGAAATGCCTCAGTTCCTGCTATGGAAATGACCAAGTGGTTCGATACCAACTACCATTTCATTGTCCCTGAGTTGGGTCCTGACGTCAAATTCTCATATGCTTCTCACAAGGCTGTTGAGGAATACAAGGAGGCTAAAGCGCTTGGAGTGGATACAATCCCAGTCCTTGTTGGTCCAGTGACCTACTTGTTGCTGTCCAAACCAGCAAAGGGTGTTGAAAAGACATTTTCGCTTCTCTCTCTTCTAGGAAAAATCATTCCTATTTACAAGGAAGTTATATCTGAGCTTAAGGCAGCTGGAGCTTCATGGATTCAGTTTGATGAGCCCACACTTGTTATGGATCTTGATTCTCACAAGTTGCAAGCATTCACTGATGCTTACTCTCAGCTAGAATCAACTCTGTCCGGCTTGAATGTTCTTATTGAGACCTACTTTGCAGATGTACCTGCAGAGGCATACAAGACTCTCACTTCCTTGAAGGGTGTCACTGCCTATGGTTTTGATTTAGTTCGTGGTTCTAAGACCCTTGAGTTAATTAAGAGTGACTTCCCGAAAGGAAAGTGCCTCTTTGCTGGATTGGTTGATGGAAGGAACATTTGGGCTAATGATCTCTCTGCTTCCCTAAGTACATTGCAGGCTCTTGAAGGCATTGTTGGCAAAGACCACCTTGTCGTCTCTACCTCCTGCTCTTGTCTTCACACTGCTGTTGATCTTATTAATGAGACTAAGCTGGACAATGAAATCAAATCGTGGCTCGCCTTTGCTGCACAGAAAATTCTTGAAGTTAATGCTTTGGCAAAGGCATTGGTTGGTCACAAGGATGAGTCATTTTTCTCAAGCAACGCTGCAGCTCTGGCTTCAAGGAAATCGTCCCCAAGGGTGACCAATGAGGCTGTTCAAAAGGCTGCTGCTGCTTTGAAGGGTTCTGACCATCGTCGTGCTACTAATGTAAGTGCCAGACTTGATGCTCAGCAGAAGAAGCTTAATCTTCCAGTTCTCCCAACCACCACCATTGGATCATTCCCTCAGACCATCGAACTGAGAAGGGTTCGCCGTGAATACAAGGCCAAAAAGATCTCTGAGGAGGAGTATGTCAAGGCCATTAAGGAGGAAATTAGCAAAGTTGTCAAGCTTCAGGAAGAGCTTGACATTGATGTCCTTGTTCATGGGGAGCCTGAGAGGAACGACATGGTTGAGTACTTTGGGGAGCAATTATCAGGGTTTGCCTTTACTGTCAATGGGTGGGTGCAATCTTATGGATCTCGATGTGTGAAGCCACCAATCATCTATGGTGATGTGAGCCGCCCAAAGCCAATGACTGTGTTCTGGTCATCTGCTGCTCAGAGCATGACTGCCCGCCCAATGAAGGGAATGCTTACAGGCCCTGTTACCATCCTCAACTGGTCCTTTGTTAGAGTTGACCAGCCCAGGTCTGAGACTACCTACCAGATTGCTTTGGCCATCAAGGATGAAGTGGAGGATCTCGAGAAAGCTGGTATCAATGTTATTCAAATTGATGAGGCTGCGTTGAGAGAAGGGTTGCCTCTCAGGAAGTCTGAGCAAGCTCACTACTTGGATTGGGCCGTGCATTCATTTAGGATCACCAACGTTGGTGTCAAGGACACTACTCAGATTCACACTCACATGTGCTATTCCAACTTCAACGACATCATCCACTCAATCATCGACATGGATGCTGATGTGATCACCATTGAGAATTCTCGTTCTGATGAGAAGCTCCTGTCGGTCTTCCGCGAGGGAGTGAAGTATGGTGCTGGTATTGGTCCTGGTGTTTATGACATCCACTCTCCAAGAATACCATCAACTGAGGAGATTGCTGACCGGATTAACAAGATGCTTGCAGTCCTTGAGACAAATATCTTGTGGGTCAACCCAGACTGTGGGCTTAAGACTCGCAAGTACGCTGAGGTGAAGCCAGCACTCAGTGCTATGGTTGCTGCTGCCAAGCAACTCCGCACTCAGCTTGCCAGTGCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

765

Amino Acids

84.7

Weight (kDa)

6.39

Isoelectric Point (pI)

36.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Meth_synt_1	PF08267	3 - 315	9e-117	Cobalamin-independent synthase, N-terminal domain
Meth_synt_2	PF01717	432 - 755	1.3e-158	Cobalamin-independent synthase, Catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04650 AT1G04650
fragaria_vesca	FvH4_4g05680 FvH4_4g05680 FvH4_4g05680 FvH4_4g05680 FvH4_4g05680 FvH4_4g05680 FvH4_4g05680 FvH4_4g05680
malus_domestica	MD00G1101100.v1.1
prunus_persica	Prupe.1G060300_v2.0.a1
pyrus_communis	pycom13g20320 pycom16g19820
rosa_chinensis	RchiOBHm_Chr4g0396881
rosa_laevigata	RLG00000009497
rosa_multiflora	Rmu_sc0000487.1_g000079
rosa_roxburghii	Rroxscaffold_5G00341740 Rroxscaffold_5G00341750
rosa_rugosa	Rorug03G0346800
rosa_samantha	Rh4AG072600 Rh4AG074000 Rh4BG071000 Rh4CG079100 Rh4DG068400
rosa_wichuraiana	Rw4G005980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	965, 1451
AatII	GACGTC	1 cut(s)	384
Acc36I	ACCTGC	1 cut(s)	751
AccB7I	CCANNNNNTGG	2 cut(s)	245, 2198
AccII	CGCG	1 cut(s)	2052
AciI	CCGC	4 cut(s)	1600, 1654, 2050, 2272
AclI	AACGTT	1 cut(s)	1905
AclWI	GGATC	7 cut(s)	84, 167, 645, 1321, 1564, 1785, 1904
AcoI	YGGCCR	2 cut(s)	291, 1755
AcsI	RAATTY	3 cut(s)	386, 1071, 2014
AcuI	CTGAAG	1 cut(s)	1415
AcyI	GRCGYC	2 cut(s)	5, 381
AdeI	CACNNNGTG	1 cut(s)	2243
AfaI	GTAC	4 cut(s)	741, 925, 1496, 2219
AfeI	AGCGCT	1 cut(s)	438
AfiI	CCNNNNNNNGG	9 cut(s)	31, 32, 245, 370, 371, 506, 1663, 1664, 2198
AflII	CTTAAG	2 cut(s)	584, 2204
AflIII	ACRYGT	1 cut(s)	1941
AjnI	CCWGG	3 cut(s)	198, 1724, 2083
AjuI	GAANNNNNNNTTGG	6 cut(s)	338, 370, 877, 909, 933, 965
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	6 cut(s)	12, 716, 976, 1013, 1727, 2162
AlwI	GGATC	7 cut(s)	84, 167, 645, 1321, 1564, 1785, 1904
AlwNI	CAGNNNCTG	2 cut(s)	314, 1682
Ama87I	CYCGRG	1 cut(s)	1781
Aor51HI	AGCGCT	1 cut(s)	438
AoxI	GGCC	7 cut(s)	34, 291, 1362, 1395, 1678, 1755, 1878
ApaI	GGGCCC	1 cut(s)	38
ApoI	RAATTY	3 cut(s)	386, 1071, 2014
AseI	ATTAAT	1 cut(s)	1014
AspLEI	GCGC	1 cut(s)	439
AspS9I	GGNCC	8 cut(s)	34, 35, 374, 470, 1679, 1701, 1878, 2081
AsuC2I	CCSGG	1 cut(s)	157
AsuHPI	GGTGA	6 cut(s)	272, 1189, 1601, 1891, 1996, 2239
AvaI	CYCGRG	1 cut(s)	1781
AvaII	GGWCC	4 cut(s)	374, 470, 1701, 2081
BaeGI	GKGCMC	1 cut(s)	38
BaeI	ACNNNNGTAYC	2 cut(s)	13, 46
BalI	TGGCCA	2 cut(s)	293, 1757
BanII	GRGCYC	3 cut(s)	38, 51, 624
BbsI	GAAGAC	3 cut(s)	120, 983, 2038
Bbv12I	GWGCWC	1 cut(s)	51
BbvCI	CCTCAGC	1 cut(s)	2223
BccI	CCATC	8 cut(s)	139, 140, 875, 1236, 1337, 1697, 1766, 2125
BceAI	ACGGC	2 cut(s)	1335, 1865
BcgI	CGANNNNNNTGC	2 cut(s)	1973, 2007
BciT130I	CCWGG	3 cut(s)	200, 1726, 2085
BciVI	GTATCC	2 cut(s)	14, 442
BclI	TGATCA	1 cut(s)	2001
BcnI	CCSGG	1 cut(s)	157
BcoDI	GTCTC	6 cut(s)	12, 716, 976, 1013, 1727, 2162
BfaI	CTAG	2 cut(s)	542, 686
BfmI	CTRYAG	2 cut(s)	744, 1143
BfoI	RGCGCY	1 cut(s)	440
BfrI	CTTAAG	2 cut(s)	584, 2204
BfuAI	ACCTGC	1 cut(s)	751
BfuI	GTATCC	2 cut(s)	14, 442
BglII	AGATCT	1 cut(s)	1371
BlpI	GCTNAGC	1 cut(s)	1266
BmcAI	AGTACT	1 cut(s)	1496
Bme1390I	CCNGG	4 cut(s)	157, 200, 1726, 2085
Bme18I	GGWCC	4 cut(s)	374, 470, 1701, 2081
BmeT110I	CYCGRG	1 cut(s)	1781
BmgT120I	GGNCC	8 cut(s)	34, 35, 374, 470, 1679, 1701, 1878, 2081
BmiI	GGNNCC	4 cut(s)	36, 37, 375, 1470
BmrFI	CCNGG	4 cut(s)	157, 200, 1726, 2085
BmrI	ACTGGG	1 cut(s)	452
BmsI	GCATC	5 cut(s)	142, 661, 1252, 1981, 2142
BmuI	ACTGGG	1 cut(s)	452
BoxI	GACNNNNGTC	1 cut(s)	1230
BpiI	GAAGAC	3 cut(s)	120, 983, 2038
BpmI	CTGGAG	1 cut(s)	615
Bpu10I	CCTNAGC	1 cut(s)	2223
Bpu1102I	GCTNAGC	1 cut(s)	1266
BpuEI	CTTGAG	4 cut(s)	35, 845, 1117, 2186
BpuMI	CCSGG	1 cut(s)	157
BsaHI	GRCGYC	2 cut(s)	5, 381
BsaI	GGTCTC	1 cut(s)	716
BsaJI	CCNNGG	4 cut(s)	60, 288, 1172, 1724
BsaWI	WCCGGW	1 cut(s)	2139
Bsc4I	CCNNNNNNNGG	9 cut(s)	31, 32, 245, 370, 371, 506, 1663, 1664, 2198
Bse1I	ACTGG	5 cut(s)	458, 473, 1289, 1703, 2286
Bse3DI	GCAATG	2 cut(s)	225, 926
BseBI	CCWGG	3 cut(s)	200, 1726, 2085
BseDI	CCNNGG	4 cut(s)	60, 288, 1172, 1724
BseGI	GGATG	6 cut(s)	1123, 1689, 1771, 1968, 1996, 2097
BseLI	CCNNNNNNNGG	9 cut(s)	31, 32, 245, 370, 371, 506, 1663, 1664, 2198
BseMI	GCAATG	2 cut(s)	225, 926
BseNI	ACTGG	5 cut(s)	458, 473, 1289, 1703, 2286
BseRI	GAGGAG	3 cut(s)	1394, 1397, 2141
BseSI	GKGCMC	1 cut(s)	38
BseYI	CCCAGC	1 cut(s)	173
BsgI	GTGCAG	1 cut(s)	1047
Bsh1236I	CGCG	1 cut(s)	2052
BshFI	GGCC	7 cut(s)	36, 293, 1364, 1397, 1680, 1757, 1880
BsiHKAI	GWGCWC	1 cut(s)	51
BsiHKCI	CYCGRG	1 cut(s)	1781
BsiSI	CCGG	3 cut(s)	156, 702, 2140
BslFI	GGGAC	2 cut(s)	347, 1153
BslI	CCNNNNNNNGG	9 cut(s)	31, 32, 245, 370, 371, 506, 1663, 1664, 2198
BsmAI	GTCTC	6 cut(s)	12, 716, 976, 1013, 1727, 2162
BsmBI	CGTCTC	2 cut(s)	12, 976
BsmFI	GGGAC	2 cut(s)	347, 1153
BsmI	GAATGC	3 cut(s)	662, 1674, 1885
BsnI	GGCC	7 cut(s)	36, 293, 1364, 1397, 1680, 1757, 1880
Bso31I	GGTCTC	1 cut(s)	716
BsoBI	CYCGRG	1 cut(s)	1781
Bsp120I	GGGCCC	1 cut(s)	34
Bsp1286I	GDGCHC	3 cut(s)	38, 51, 624
Bsp1720I	GCTNAGC	1 cut(s)	1266
Bsp19I	CCATGG	1 cut(s)	288
BspACI	CCGC	4 cut(s)	1600, 1654, 2050, 2272
BspANI	GGCC	7 cut(s)	36, 293, 1364, 1397, 1680, 1757, 1880
BspFNI	CGCG	1 cut(s)	2052
BspLI	GGNNCC	4 cut(s)	36, 37, 375, 1470
BspMAI	CTGCAG	2 cut(s)	748, 1147
BspMI	ACCTGC	1 cut(s)	751
BspPI	GGATC	7 cut(s)	84, 167, 645, 1321, 1564, 1785, 1904
BspQI	GCTCTTC	1 cut(s)	1431
BspTI	CTTAAG	2 cut(s)	584, 2204
BspTNI	GGTCTC	1 cut(s)	716
BsrDI	GCAATG	2 cut(s)	225, 926
BsrI	ACTGG	5 cut(s)	458, 473, 1289, 1703, 2286
BssECI	CCNNGG	4 cut(s)	60, 288, 1172, 1724
BssNI	GRCGYC	2 cut(s)	5, 381
BssT1I	CCWWGG	3 cut(s)	60, 288, 1172
Bst2UI	CCWGG	3 cut(s)	200, 1726, 2085
Bst4CI	ACNGT	3 cut(s)	1531, 1618, 2198
Bst6I	CTCTTC	2 cut(s)	543, 1431
BstACI	GRCGYC	2 cut(s)	5, 381
BstAFI	CTTAAG	2 cut(s)	584, 2204
BstAPI	GCANNNNNTGC	1 cut(s)	2243
BstC8I	GCNNGC	8 cut(s)	660, 933, 1053, 1654, 1860, 2157, 2235, 2283
BstDSI	CCRYGG	1 cut(s)	288
BstEII	GGTNACC	1 cut(s)	1177
BstF5I	GGATG	6 cut(s)	1123, 1689, 1771, 1968, 1996, 2097
BstFNI	CGCG	1 cut(s)	2052
BstH2I	RGCGCY	1 cut(s)	440
BstHHI	GCGC	1 cut(s)	439
BstMAI	GTCTC	6 cut(s)	12, 716, 976, 1013, 1727, 2162
BstMWI	GCNNNNNNNGC	8 cut(s)	596, 951, 1061, 1151, 1208, 1276, 2243, 2252
BstNI	CCWGG	3 cut(s)	200, 1726, 2085
BstNSI	RCATGY	1 cut(s)	1945
BstPAI	GACNNNNGTC	1 cut(s)	1230
BstPI	GGTNACC	1 cut(s)	1177
BstSCI	CCNGG	4 cut(s)	155, 198, 1724, 2083
BstSFI	CTRYAG	2 cut(s)	744, 1143
BstSLI	GKGCMC	1 cut(s)	38
BstUI	CGCG	1 cut(s)	2052
BstV2I	GAAGAC	3 cut(s)	120, 983, 2038
BstX2I	RGATCY	4 cut(s)	637, 1371, 1556, 1777
BstYI	RGATCY	4 cut(s)	637, 1371, 1556, 1777
BsuI	GTATCC	2 cut(s)	14, 442
BsuRI	GGCC	7 cut(s)	36, 293, 1364, 1397, 1680, 1757, 1880
BtgI	CCRYGG	1 cut(s)	288
BtsCI	GGATG	6 cut(s)	1123, 1689, 1771, 1968, 1996, 2097
BtsI	GCAGTG	4 cut(s)	94, 213, 783, 996
BtsIMutI	CAGTG	8 cut(s)	94, 213, 480, 666, 783, 996, 2248, 2293
BveI	ACCTGC	1 cut(s)	751
Cac8I	GCNNGC	8 cut(s)	660, 933, 1053, 1654, 1860, 2157, 2235, 2283
CaiI	CAGNNNCTG	2 cut(s)	314, 1682
CfoI	GCGC	1 cut(s)	439
Cfr13I	GGNCC	8 cut(s)	34, 35, 374, 470, 1679, 1701, 1878, 2081
CsiI	ACCWGGT	1 cut(s)	198
Csp6I	GTAC	4 cut(s)	740, 924, 1495, 2218
CspCI	CAANNNNNGTGG	2 cut(s)	1291, 1326
CviAII	CATG	8 cut(s)	163, 289, 603, 1463, 1486, 1645, 1942, 1987
CviQI	GTAC	4 cut(s)	740, 924, 1495, 2218
DraIII	CACNNNGTG	1 cut(s)	2243
DrdI	GACNNNNNNGTC	2 cut(s)	965, 1451
DseDI	GACNNNNNNGTC	2 cut(s)	965, 1451
EaeI	YGGCCR	2 cut(s)	291, 1755
Eam1104I	CTCTTC	2 cut(s)	543, 1431
EarI	CTCTTC	2 cut(s)	543, 1431
Ecl136II	GAGCTC	1 cut(s)	49
Eco130I	CCWWGG	3 cut(s)	60, 288, 1172
Eco24I	GRGCYC	3 cut(s)	38, 51, 624
Eco31I	GGTCTC	1 cut(s)	716
Eco47I	GGWCC	4 cut(s)	374, 470, 1701, 2081
Eco47III	AGCGCT	1 cut(s)	438
Eco53kI	GAGCTC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	1415
Eco88I	CYCGRG	1 cut(s)	1781
Eco91I	GGTNACC	1 cut(s)	1177
EcoICRI	GAGCTC	1 cut(s)	49
EcoO109I	RGGNCCY	3 cut(s)	35, 374, 1679
EcoO65I	GGTNACC	1 cut(s)	1177
EcoRI	GAATTC	1 cut(s)	2014
EcoRII	CCWGG	3 cut(s)	198, 1724, 2083
EcoT14I	CCWWGG	3 cut(s)	60, 288, 1172
EcoT38I	GRGCYC	3 cut(s)	38, 51, 624
ErhI	CCWWGG	3 cut(s)	60, 288, 1172
Esp3I	CGTCTC	2 cut(s)	12, 976
FaeI	CATG	8 cut(s)	166, 292, 606, 1466, 1489, 1648, 1945, 1990
FalI	AAGNNNNNCTT	8 cut(s)	44, 76, 827, 859, 848, 880, 948, 980
FaqI	GGGAC	2 cut(s)	347, 1153
FatI	CATG	8 cut(s)	162, 288, 602, 1462, 1485, 1644, 1941, 1986
FauI	CCCGC	1 cut(s)	1661
FauNDI	CATATG	1 cut(s)	394
FbaI	TGATCA	1 cut(s)	2001
FokI	GGATG	6 cut(s)	1130, 1676, 1778, 1955, 2003, 2084
FriOI	GRGCYC	3 cut(s)	38, 51, 624
FspBI	CTAG	2 cut(s)	542, 686
GlaI	GCGC	1 cut(s)	438
GsaI	CCCAGC	1 cut(s)	177
GsuI	CTGGAG	1 cut(s)	615
HaeII	RGCGCY	1 cut(s)	440
HaeIII	GGCC	7 cut(s)	36, 293, 1364, 1397, 1680, 1757, 1880
HapII	CCGG	3 cut(s)	156, 702, 2140
HhaI	GCGC	1 cut(s)	439
Hin1I	GRCGYC	2 cut(s)	5, 381
Hin1II	CATG	8 cut(s)	166, 292, 606, 1466, 1489, 1648, 1945, 1990
Hin6I	GCGC	1 cut(s)	437
HinP1I	GCGC	1 cut(s)	437
HincII	GTYRAC	2 cut(s)	1717, 2188
HindII	GTYRAC	2 cut(s)	1717, 2188
HindIII	AAGCTT	2 cut(s)	1277, 1427
HinfI	GANTC	8 cut(s)	65, 607, 644, 689, 760, 1121, 1930, 2209
HpaII	CCGG	3 cut(s)	156, 702, 2140
HphI	GGTGA	6 cut(s)	272, 1189, 1601, 1891, 1996, 2239
Hpy166II	GTNNAC	2 cut(s)	1717, 2188
Hpy188I	TCNGA	9 cut(s)	580, 1225, 1326, 1378, 1641, 1732, 1855, 1929, 2026
Hpy8I	GTNNAC	2 cut(s)	1717, 2188
Hpy99I	CGWCG	1 cut(s)	1236
HpyAV	CCTTC	7 cut(s)	769, 879, 935, 1210, 1335, 1657, 1826
HpyCH4III	ACNGT	3 cut(s)	1531, 1618, 2198
HpyCH4IV	ACGT	2 cut(s)	381, 1905
HpyF10VI	GCNNNNNNNGC	8 cut(s)	596, 951, 1061, 1151, 1208, 1276, 2243, 2252
HpySE526I	ACGT	2 cut(s)	381, 1905
Hsp92I	GRCGYC	2 cut(s)	5, 381
Hsp92II	CATG	8 cut(s)	166, 292, 606, 1466, 1489, 1648, 1945, 1990
HspAI	GCGC	1 cut(s)	437
Ksp22I	TGATCA	1 cut(s)	2001
LguI	GCTCTTC	1 cut(s)	1431
LmnI	GCTCC	4 cut(s)	596, 1468, 1504, 2040
LweI	GCATC	5 cut(s)	142, 661, 1252, 1981, 2142
MabI	ACCWGGT	1 cut(s)	198
MaeI	CTAG	2 cut(s)	542, 686
MaeII	ACGT	2 cut(s)	381, 1905
MaeIII	GTNAC	6 cut(s)	475, 781, 839, 1109, 1177, 1684
MboII	GAAGA	8 cut(s)	107, 120, 530, 983, 1277, 1285, 1448, 2038
MflI	RGATCY	4 cut(s)	637, 1371, 1556, 1777
MhlI	GDGCHC	3 cut(s)	38, 51, 624
MlsI	TGGCCA	2 cut(s)	293, 1757
MluCI	AATT	7 cut(s)	386, 831, 1071, 1410, 1508, 1809, 2014
MluNI	TGGCCA	2 cut(s)	293, 1757
MlyI	GAGTC	3 cut(s)	754, 1130, 2203
MmeI	TCCRAC	2 cut(s)	230, 1977
Mox20I	TGGCCA	2 cut(s)	293, 1757
MscI	TGGCCA	2 cut(s)	293, 1757
MseI	TTAA	9 cut(s)	585, 830, 834, 1014, 1083, 1281, 1401, 2145, 2205
MslI	CAYNNNNRTG	5 cut(s)	218, 1116, 1233, 1940, 1985
Msp20I	TGGCCA	2 cut(s)	293, 1757
MspA1I	CMGCKG	1 cut(s)	593
MspCI	CTTAAG	2 cut(s)	584, 2204
MspI	CCGG	3 cut(s)	156, 702, 2140
MspR9I	CCNGG	4 cut(s)	157, 200, 1726, 2085
Mva1269I	GAATGC	3 cut(s)	662, 1674, 1885
MvaI	CCWGG	3 cut(s)	200, 1726, 2085
MvnI	CGCG	1 cut(s)	2052
MwoI	GCNNNNNNNGC	8 cut(s)	596, 951, 1061, 1151, 1208, 1276, 2243, 2252
NciI	CCSGG	1 cut(s)	157
NcoI	CCATGG	1 cut(s)	288
NdeI	CATATG	1 cut(s)	394
NlaIII	CATG	8 cut(s)	166, 292, 606, 1466, 1489, 1648, 1945, 1990
NlaIV	GGNNCC	4 cut(s)	36, 37, 375, 1470
NmuCI	GTSAC	5 cut(s)	475, 781, 839, 1109, 1177
NspI	RCATGY	1 cut(s)	1945
PacI	TTAATTAA	1 cut(s)	834
PaeR7I	CTCGAG	1 cut(s)	1781
PciI	ACATGT	1 cut(s)	1941
PciSI	GCTCTTC	1 cut(s)	1431
PctI	GAATGC	3 cut(s)	662, 1674, 1885
PfeI	GAWTC	5 cut(s)	65, 607, 644, 689, 1930
PflMI	CCANNNNNTGG	2 cut(s)	245, 2198
PleI	GAGTC	3 cut(s)	754, 1129, 2203
PpsI	GAGTC	3 cut(s)	754, 1129, 2203
PpuMI	RGGWCCY	1 cut(s)	374
PscI	ACATGT	1 cut(s)	1941
PshAI	GACNNNNGTC	1 cut(s)	1230
PshBI	ATTAAT	1 cut(s)	1014
Psp124BI	GAGCTC	1 cut(s)	51
Psp1406I	AACGTT	1 cut(s)	1905
Psp5II	RGGWCCY	1 cut(s)	374
Psp6I	CCWGG	3 cut(s)	198, 1724, 2083
PspEI	GGTNACC	1 cut(s)	1177
PspFI	CCCAGC	1 cut(s)	173
PspGI	CCWGG	3 cut(s)	198, 1724, 2083
PspN4I	GGNNCC	4 cut(s)	36, 37, 375, 1470
PspOMI	GGGCCC	1 cut(s)	34
PspPI	GGNCC	8 cut(s)	34, 35, 374, 470, 1679, 1701, 1878, 2081
PspPPI	RGGWCCY	1 cut(s)	374
PstI	CTGCAG	2 cut(s)	748, 1147
PstNI	CAGNNNCTG	2 cut(s)	314, 1682
PsuI	RGATCY	4 cut(s)	637, 1371, 1556, 1777
PvuII	CAGCTG	1 cut(s)	593
RsaI	GTAC	4 cut(s)	741, 925, 1496, 2219
RsaNI	GTAC	4 cut(s)	740, 924, 1495, 2218
RseI	CAYNNNNRTG	5 cut(s)	218, 1116, 1233, 1940, 1985
SacI	GAGCTC	1 cut(s)	51
SapI	GCTCTTC	1 cut(s)	1431
SaqAI	TTAA	9 cut(s)	585, 830, 834, 1014, 1083, 1281, 1401, 2145, 2205
Sau96I	GGNCC	8 cut(s)	34, 35, 374, 470, 1679, 1701, 1878, 2081
ScaI	AGTACT	1 cut(s)	1496
SchI	GAGTC	3 cut(s)	754, 1130, 2203
ScrFI	CCNGG	4 cut(s)	157, 200, 1726, 2085
SduI	GDGCHC	3 cut(s)	38, 51, 624
SexAI	ACCWGGT	1 cut(s)	198
SfaNI	GCATC	5 cut(s)	142, 661, 1252, 1981, 2142
SfcI	CTRYAG	2 cut(s)	744, 1143
Sfr274I	CTCGAG	1 cut(s)	1781
SinI	GGWCC	4 cut(s)	374, 470, 1701, 2081
SlaI	CTCGAG	1 cut(s)	1781
SmiMI	CAYNNNNRTG	5 cut(s)	218, 1116, 1233, 1940, 1985
SmlI	CTYRAG	7 cut(s)	50, 584, 824, 1132, 1781, 2165, 2204
SmoI	CTYRAG	7 cut(s)	50, 584, 824, 1132, 1781, 2165, 2204
Sse9I	AATT	7 cut(s)	386, 831, 1071, 1410, 1508, 1809, 2014
SsiI	CCGC	4 cut(s)	1600, 1654, 2050, 2272
SspMI	CTAG	2 cut(s)	542, 686
SstI	GAGCTC	1 cut(s)	51
StyD4I	CCNGG	4 cut(s)	155, 198, 1724, 2083
StyI	CCWWGG	3 cut(s)	60, 288, 1172
TaaI	ACNGT	3 cut(s)	1531, 1618, 2198
TaiI	ACGT	2 cut(s)	384, 1908
TaqI	TCGA	5 cut(s)	339, 1332, 1561, 1782, 1983
TaqII	GACCGA	1 cut(s)	2032
TasI	AATT	7 cut(s)	386, 831, 1071, 1410, 1508, 1809, 2014
TatI	WGTACW	2 cut(s)	923, 1494
TauI	GCSGC	1 cut(s)	1602
TfiI	GAWTC	5 cut(s)	65, 607, 644, 689, 1930
Tru1I	TTAA	9 cut(s)	585, 830, 834, 1014, 1083, 1281, 1401, 2145, 2205
Tru9I	TTAA	9 cut(s)	585, 830, 834, 1014, 1083, 1281, 1401, 2145, 2205
TscAI	CASTG	8 cut(s)	94, 220, 480, 673, 790, 1003, 2248, 2293
TseFI	GTSAC	5 cut(s)	475, 781, 839, 1109, 1177
Tsp45I	GTSAC	5 cut(s)	475, 781, 839, 1109, 1177
TspDTI	ATGAA	7 cut(s)	346, 591, 1050, 1451, 1676, 1782, 1878
TspRI	CASTG	8 cut(s)	94, 220, 480, 673, 790, 1003, 2248, 2293
Van91I	CCANNNNNTGG	2 cut(s)	245, 2198
Vha464I	CTTAAG	2 cut(s)	584, 2204
VpaK11BI	GGWCC	4 cut(s)	374, 470, 1701, 2081
VspI	ATTAAT	1 cut(s)	1014
XapI	RAATTY	3 cut(s)	386, 1071, 2014
XceI	RCATGY	1 cut(s)	1945
XcmI	CCANNNNNNNNNTGG	2 cut(s)	246, 631
XhoI	CTCGAG	1 cut(s)	1781
XspI	CTAG	2 cut(s)	542, 686
ZraI	GACGTC	1 cut(s)	382
ZrmI	AGTACT	1 cut(s)	1496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.