Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006689

Physical Location & Seq

Genomic Coordinates Forward (+)

17226324 .. 17228699

Gene Structure 2376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g19820.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTTAAACAAGGCTATATTACATGTGGCTGTAAAATACGTAGAATCTGATATATCCAATGCTCTAGCACATTTCCTTGCCCTCGGGATCAAGGTAATATGTCTTTTCGTGCAGTGTGCCTGTATTAAAATCCAGGATGCTAGCATATGGTGTGTTAAGCACCTAAAAATGACTCTTATGTCAAGTGAGGAGTCTCAAGAGGAAGAGCACGGCAATCTGTTCGAGAGAATTCGGTCATTTGAATCAGTAGGAAGGGTCACATTGGAGGTCATTGATGCTGTAATAAGAATATGTGGAGCATATGCTCGAGCTGTAAATTGGGAGTCTTGGGAAGACAAGCTTGAGATGGATAAATCTGGAATGGAATTTGAAGGGGTCAGCAATATGAATCACGTTATTAATGTAATAAAGTACACAATAGAAAAATTGTGTGAGATAGGCGTTGTTGCTGCTAATAATGGGGGCTGTCTGGTAAAGGTTCTCAATTTTTCGTGGAAAGGTGTAGTCACTTTGCTTCAGCTTGGTGAGGGGGTATGCGCAACAAAGGTGAATGTAGCCAATATAATTTCAAATCTTGTCTCATTGGTCAATGAATCTTTAAGATGTGCAGCTGAGGCTTGGTCATCATCTTTGAATGAAACCATCTCCGTGACAGAAGCTAGAAAGACATTTCTTCCAGTAAAGTTTTATCTGATTAATGCAATAAAAATATCTACCATGTATCCATTTCAAGCATGTCTGGTACAGAGGGAGATAACAAATGCATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4487

Protein Analysis

257

Amino Acids

28.41

Weight (kDa)

6.0

Isoelectric Point (pI)

37.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04650 AT1G04650
fragaria_vesca	FvH4_4g05680 FvH4_4g05680 FvH4_4g05680 FvH4_4g05680 FvH4_4g05680 FvH4_4g05680 FvH4_4g05680 FvH4_4g05680
malus_domestica	MD00G1101100.v1.1
prunus_persica	Prupe.1G060300_v2.0.a1
pyrus_communis	pycom13g20320 pycom16g19820
rosa_chinensis	RchiOBHm_Chr4g0396881
rosa_laevigata	RLG00000009497
rosa_multiflora	Rmu_sc0000487.1_g000079
rosa_roxburghii	Rroxscaffold_5G00341740 Rroxscaffold_5G00341750
rosa_rugosa	Rorug03G0346800
rosa_samantha	Rh4AG072600 Rh4AG074000 Rh4BG071000 Rh4CG079100 Rh4DG068400
rosa_wichuraiana	Rw4G005980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	178
Acc16I	TGCGCA	1 cut(s)	538
AclWI	GGATC	1 cut(s)	95
AcsI	RAATTY	2 cut(s)	228, 365
AcuI	CTGAAG	1 cut(s)	500
AfaI	GTAC	2 cut(s)	413, 744
AflIII	ACRYGT	1 cut(s)	22
AgsI	TTSAA	5 cut(s)	242, 371, 570, 634, 731
AjnI	CCWGG	1 cut(s)	132
AluBI	AGCT	5 cut(s)	311, 340, 520, 611, 659
AluI	AGCT	5 cut(s)	311, 340, 520, 611, 659
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	2 cut(s)	198, 583
AlwI	GGATC	1 cut(s)	95
Ama87I	CYCGRG	2 cut(s)	83, 306
ApeKI	GCWGC	2 cut(s)	449, 608
ApoI	RAATTY	2 cut(s)	228, 365
AseI	ATTAAT	2 cut(s)	399, 696
AspLEI	GCGC	1 cut(s)	539
AsuHPI	GGTGA	2 cut(s)	536, 559
AsuNHI	GCTAGC	1 cut(s)	140
AvaI	CYCGRG	2 cut(s)	83, 306
BbsI	GAAGAC	1 cut(s)	339
Bbv12I	GWGCWC	1 cut(s)	210
BbvCI	CCTCAGC	1 cut(s)	612
BbvI	GCAGC	2 cut(s)	436, 620
BccI	CCATC	2 cut(s)	340, 650
BceAI	ACGGC	1 cut(s)	226
BcgI	CGANNNNNNTGC	2 cut(s)	202, 236
BciT130I	CCWGG	1 cut(s)	134
BciVI	GTATCC	1 cut(s)	732
BcoDI	GTCTC	2 cut(s)	198, 583
BfaI	CTAG	3 cut(s)	65, 141, 660
BfuI	GTATCC	1 cut(s)	732
BisI	GCNGC	2 cut(s)	450, 609
BlsI	GCNGC	2 cut(s)	451, 610
Bme1390I	CCNGG	1 cut(s)	134
BmeT110I	CYCGRG	2 cut(s)	83, 306
BmrFI	CCNGG	1 cut(s)	134
BmsI	GCATC	2 cut(s)	127, 265
BmtI	GCTAGC	1 cut(s)	144
BpiI	GAAGAC	1 cut(s)	339
Bpu10I	CCTNAGC	1 cut(s)	612
BpuEI	CTTGAG	2 cut(s)	180, 362
BsaAI	YACGTR	1 cut(s)	40
BsaJI	CCNNGG	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	677
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	1 cut(s)	82
BseGI	GGATG	2 cut(s)	142, 764
BseMII	CTCAG	1 cut(s)	603
BseNI	ACTGG	1 cut(s)	677
BseRI	GAGGAG	1 cut(s)	203
BseXI	GCAGC	2 cut(s)	436, 620
BsgI	GTGCAG	2 cut(s)	131, 627
BsiHKAI	GWGCWC	1 cut(s)	210
BsiHKCI	CYCGRG	2 cut(s)	83, 306
BsmAI	GTCTC	2 cut(s)	198, 583
BsoBI	CYCGRG	2 cut(s)	83, 306
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	1 cut(s)	87
BspCNI	CTCAG	1 cut(s)	604
BspOI	GCTAGC	1 cut(s)	144
BspPI	GGATC	1 cut(s)	95
BspQI	GCTCTTC	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	677
BssECI	CCNNGG	1 cut(s)	82
BssMI	GATC	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	134
Bst6I	CTCTTC	1 cut(s)	198
BstBAI	YACGTR	1 cut(s)	40
BstC8I	GCNNGC	1 cut(s)	142
BstDEI	CTNAG	1 cut(s)	612
BstF5I	GGATG	2 cut(s)	142, 764
BstHHI	GCGC	1 cut(s)	539
BstKTI	GATC	1 cut(s)	90
BstMAI	GTCTC	2 cut(s)	198, 583
BstMBI	GATC	1 cut(s)	87
BstMWI	GCNNNNNNNGC	1 cut(s)	614
BstNI	CCWGG	1 cut(s)	134
BstNSI	RCATGY	2 cut(s)	26, 738
BstSCI	CCNGG	1 cut(s)	132
BstSNI	TACGTA	1 cut(s)	40
BstV1I	GCAGC	2 cut(s)	436, 620
BstV2I	GAAGAC	1 cut(s)	339
BsuI	GTATCC	1 cut(s)	732
BtsCI	GGATG	2 cut(s)	142, 764
BtsI	GCAGTG	1 cut(s)	119
BtsIMutI	CAGTG	1 cut(s)	119
Cac8I	GCNNGC	1 cut(s)	142
CfoI	GCGC	1 cut(s)	539
Csp6I	GTAC	2 cut(s)	412, 743
CviAII	CATG	3 cut(s)	23, 718, 735
CviQI	GTAC	2 cut(s)	412, 743
DdeI	CTNAG	1 cut(s)	612
DpnI	GATC	1 cut(s)	89
DpnII	GATC	1 cut(s)	87
DrdI	GACNNNNNNGTC	1 cut(s)	178
DseDI	GACNNNNNNGTC	1 cut(s)	178
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
Eco105I	TACGTA	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	500
Eco88I	CYCGRG	2 cut(s)	83, 306
EcoRI	GAATTC	1 cut(s)	228
EcoRII	CCWGG	1 cut(s)	132
EcoT22I	ATGCAT	1 cut(s)	766
FaeI	CATG	3 cut(s)	26, 721, 738
FalI	AAGNNNNNCTT	2 cut(s)	324, 356
FatI	CATG	3 cut(s)	22, 717, 734
FauNDI	CATATG	2 cut(s)	146, 301
Fnu4HI	GCNGC	2 cut(s)	450, 609
FokI	GGATG	2 cut(s)	149, 751
Fsp4HI	GCNGC	2 cut(s)	450, 609
FspBI	CTAG	3 cut(s)	65, 141, 660
FspI	TGCGCA	1 cut(s)	538
GlaI	GCGC	1 cut(s)	538
GluI	GCNGC	2 cut(s)	450, 609
HhaI	GCGC	1 cut(s)	539
Hin1II	CATG	3 cut(s)	26, 721, 738
Hin6I	GCGC	1 cut(s)	537
HinP1I	GCGC	1 cut(s)	537
HindIII	AAGCTT	1 cut(s)	338
HinfI	GANTC	7 cut(s)	44, 172, 191, 242, 323, 388, 593
HphI	GGTGA	2 cut(s)	536, 559
Hpy166II	GTNNAC	1 cut(s)	414
Hpy188I	TCNGA	2 cut(s)	49, 693
Hpy188III	TCNNGA	5 cut(s)	85, 197, 223, 357, 768
Hpy8I	GTNNAC	1 cut(s)	414
HpyAV	CCTTC	2 cut(s)	246, 365
HpyCH4IV	ACGT	2 cut(s)	39, 393
HpyCH4V	TGCA	4 cut(s)	112, 608, 701, 764
HpyF10VI	GCNNNNNNNGC	1 cut(s)	614
HpyF3I	CTNAG	1 cut(s)	612
HpySE526I	ACGT	2 cut(s)	39, 393
Hsp92II	CATG	3 cut(s)	26, 721, 738
HspAI	GCGC	1 cut(s)	537
Kzo9I	GATC	1 cut(s)	87
LguI	GCTCTTC	1 cut(s)	198
LmnI	GCTCC	1 cut(s)	296
LpnPI	CCDG	7 cut(s)	119, 133, 146, 342, 455, 690, 725
Lsp1109I	GCAGC	2 cut(s)	436, 620
LweI	GCATC	2 cut(s)	127, 265
MaeI	CTAG	3 cut(s)	65, 141, 660
MaeII	ACGT	2 cut(s)	39, 393
MaeIII	GTNAC	3 cut(s)	256, 505, 649
MalI	GATC	1 cut(s)	89
MboI	GATC	1 cut(s)	87
MboII	GAAGA	3 cut(s)	215, 344, 665
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	6 cut(s)	228, 316, 365, 425, 484, 564
MlyI	GAGTC	3 cut(s)	166, 200, 332
MnlI	CCTC	7 cut(s)	92, 181, 193, 259, 520, 607, 741
Mph1103I	ATGCAT	1 cut(s)	766
MseI	TTAA	6 cut(s)	5, 126, 156, 399, 599, 696
MslI	CAYNNNNRTG	1 cut(s)	647
MspA1I	CMGCKG	1 cut(s)	611
MspR9I	CCNGG	1 cut(s)	134
MvaI	CCWGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	1 cut(s)	614
NdeI	CATATG	2 cut(s)	146, 301
NdeII	GATC	1 cut(s)	87
NheI	GCTAGC	1 cut(s)	140
NlaIII	CATG	3 cut(s)	26, 721, 738
NmuCI	GTSAC	3 cut(s)	256, 505, 649
NsbI	TGCGCA	1 cut(s)	538
NsiI	ATGCAT	1 cut(s)	766
NspI	RCATGY	2 cut(s)	26, 738
PaeR7I	CTCGAG	1 cut(s)	306
PciI	ACATGT	1 cut(s)	22
PciSI	GCTCTTC	1 cut(s)	198
PfeI	GAWTC	4 cut(s)	44, 242, 388, 593
PfoI	TCCNGGA	1 cut(s)	132
PkrI	GCNGC	2 cut(s)	451, 610
PleI	GAGTC	3 cut(s)	166, 199, 331
PpsI	GAGTC	3 cut(s)	166, 199, 331
Ppu21I	YACGTR	1 cut(s)	40
PscI	ACATGT	1 cut(s)	22
PshBI	ATTAAT	2 cut(s)	399, 696
Psp6I	CCWGG	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	132
PspXI	VCTCGAGB	1 cut(s)	306
PvuII	CAGCTG	1 cut(s)	611
RsaI	GTAC	2 cut(s)	413, 744
RsaNI	GTAC	2 cut(s)	412, 743
RseI	CAYNNNNRTG	1 cut(s)	647
SapI	GCTCTTC	1 cut(s)	198
SaqAI	TTAA	6 cut(s)	5, 126, 156, 399, 599, 696
SatI	GCNGC	2 cut(s)	450, 609
Sau3AI	GATC	1 cut(s)	87
SchI	GAGTC	3 cut(s)	166, 200, 332
ScrFI	CCNGG	1 cut(s)	134
SduI	GDGCHC	1 cut(s)	210
SfaNI	GCATC	2 cut(s)	127, 265
Sfr274I	CTCGAG	1 cut(s)	306
SlaI	CTCGAG	1 cut(s)	306
SmiMI	CAYNNNNRTG	1 cut(s)	647
SmlI	CTYRAG	3 cut(s)	195, 306, 341
SmoI	CTYRAG	3 cut(s)	195, 306, 341
SnaBI	TACGTA	1 cut(s)	40
Sse9I	AATT	6 cut(s)	228, 316, 365, 425, 484, 564
SspMI	CTAG	3 cut(s)	65, 141, 660
StyD4I	CCNGG	1 cut(s)	132
TaiI	ACGT	2 cut(s)	42, 396
TaqI	TCGA	2 cut(s)	222, 307
TaqII	GACCGA	1 cut(s)	222
TasI	AATT	6 cut(s)	228, 316, 365, 425, 484, 564
TatI	WGTACW	1 cut(s)	411
TfiI	GAWTC	4 cut(s)	44, 242, 388, 593
Tru1I	TTAA	6 cut(s)	5, 126, 156, 399, 599, 696
Tru9I	TTAA	6 cut(s)	5, 126, 156, 399, 599, 696
TscAI	CASTG	1 cut(s)	119
TseFI	GTSAC	3 cut(s)	256, 505, 649
TseI	GCWGC	2 cut(s)	449, 608
Tsp45I	GTSAC	3 cut(s)	256, 505, 649
TspDTI	ATGAA	3 cut(s)	401, 606, 651
TspGWI	ACGGA	1 cut(s)	637
TspRI	CASTG	1 cut(s)	119
VspI	ATTAAT	2 cut(s)	399, 696
XapI	RAATTY	2 cut(s)	228, 365
XceI	RCATGY	2 cut(s)	26, 738
XhoI	CTCGAG	1 cut(s)	306
XspI	CTAG	3 cut(s)	65, 141, 660
Zsp2I	ATGCAT	1 cut(s)	766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.