Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006689

Physical Location & Seq

Genomic Coordinates Reverse (-)

10359026 .. 10362237

Gene Structure 3212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00341750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGAGGGAGGGAGCTCAGAATTGCAGAGCATACAAGACGCCATCAGATCCTCAGATGTGGTGGAGAATCGGATTGAATTACTTAAGAAGCTTGGCGATTTGAAAATAACAGAGAAGTCTGAATTGGCTTCCCTTGCCGAGTGTTTGACAATACTTACTTGGTCCATTGTTTTGCACTTAACAACAAGCTCGATATTCTGGGAGGAGTATACTTGCTTGGATTTAAGCCAGTGCATGTTAAATAGTGCTATATTACAGGTGGCTGCGAAGCACCTAGAATCAGACACATCCAACTGTCTAGCACATTTCCTTGTCCTTGGGACCAAGGCAAGCATATGGTGTGGAAAGCACCTCAAAATGACTCTTATGTCAACCGAGGAATCTCAAGAAGAAGAGCACGAGAACCTGTTCTTTCAGCTGTTTCTGGATCTGCTGAGCTTTTTGAGGGCTTGCTTTTCAGCTTTGGCAAGATACCCTGTTTCTGTTGAGAAGATGACAGTGGCTATAGTTGAAACATTCTTTGATGAAGAGTTAAACTTGATCAAAGATTCTATATCAGAGATAAAGTATGCAAATGGGGCTAAAGAAGCATCAGTAAATAAATCAAGGGTTTCCGCCCACCATATTCTTAGGAGGATTGGTAAAATGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4487

Protein Analysis

217

Amino Acids

24.36

Weight (kDa)

5.29

Isoelectric Point (pI)

60.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04650 AT1G04650
fragaria_vesca	FvH4_4g05680 FvH4_4g05680 FvH4_4g05680 FvH4_4g05680 FvH4_4g05680 FvH4_4g05680 FvH4_4g05680 FvH4_4g05680
malus_domestica	MD00G1101100.v1.1
prunus_persica	Prupe.1G060300_v2.0.a1
pyrus_communis	pycom13g20320 pycom16g19820
rosa_chinensis	RchiOBHm_Chr4g0396881
rosa_laevigata	RLG00000009497
rosa_multiflora	Rmu_sc0000487.1_g000079
rosa_roxburghii	Rroxscaffold_5G00341740 Rroxscaffold_5G00341750
rosa_rugosa	Rorug03G0346800
rosa_samantha	Rh4AG072600 Rh4AG074000 Rh4BG071000 Rh4CG079100 Rh4DG068400
rosa_wichuraiana	Rw4G005980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	367
AccI	GTMKAC	1 cut(s)	209
AciI	CCGC	1 cut(s)	615
AclWI	GGATC	2 cut(s)	42, 435
AcyI	GRCGYC	1 cut(s)	39
AflII	CTTAAG	1 cut(s)	83
AgsI	TTSAA	3 cut(s)	77, 103, 512
AjuI	GAANNNNNNNTTGG	2 cut(s)	107, 139
AluBI	AGCT	6 cut(s)	15, 91, 189, 418, 438, 461
AluI	AGCT	6 cut(s)	15, 91, 189, 418, 438, 461
Alw21I	GWGCWC	2 cut(s)	17, 399
AlwI	GGATC	2 cut(s)	42, 435
ApeKI	GCWGC	1 cut(s)	263
Asp700I	GAANNNNTTC	1 cut(s)	407
AspS9I	GGNCC	2 cut(s)	162, 321
AvaII	GGWCC	2 cut(s)	162, 321
BanII	GRGCYC	1 cut(s)	17
BauI	CACGAG	1 cut(s)	398
Bbv12I	GWGCWC	2 cut(s)	17, 399
BbvI	GCAGC	1 cut(s)	250
BccI	CCATC	1 cut(s)	50
BclI	TGATCA	1 cut(s)	540
BfaI	CTAG	2 cut(s)	275, 299
BfmI	CTRYAG	1 cut(s)	504
BfrI	CTTAAG	1 cut(s)	83
BisI	GCNGC	1 cut(s)	264
BlpI	GCTNAGC	1 cut(s)	434
BlsI	GCNGC	1 cut(s)	265
Bme18I	GGWCC	2 cut(s)	162, 321
BmgT120I	GGNCC	2 cut(s)	162, 321
BmiI	GGNNCC	1 cut(s)	322
BmsI	GCATC	1 cut(s)	599
Bpu1102I	GCTNAGC	1 cut(s)	434
BpuEI	CTTGAG	1 cut(s)	369
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	3 cut(s)	316, 324, 375
BsaXI	ACNNNNNCTCC	1 cut(s)	625
Bse1I	ACTGG	1 cut(s)	229
BseDI	CCNNGG	3 cut(s)	316, 324, 375
BseGI	GGATG	1 cut(s)	287
BseMII	CTCAG	3 cut(s)	30, 66, 425
BseNI	ACTGG	1 cut(s)	229
BseRI	GAGGAG	1 cut(s)	218
BseXI	GCAGC	1 cut(s)	250
BsiHKAI	GWGCWC	2 cut(s)	17, 399
BslFI	GGGAC	1 cut(s)	334
BsmFI	GGGAC	1 cut(s)	334
Bsp1286I	GDGCHC	2 cut(s)	17, 399
Bsp143I	GATC	3 cut(s)	47, 427, 540
Bsp1720I	GCTNAGC	1 cut(s)	434
BspACI	CCGC	1 cut(s)	615
BspCNI	CTCAG	3 cut(s)	29, 65, 426
BspLI	GGNNCC	1 cut(s)	322
BspPI	GGATC	2 cut(s)	42, 435
BspQI	GCTCTTC	1 cut(s)	387
BspTI	CTTAAG	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	229
BssECI	CCNNGG	3 cut(s)	316, 324, 375
BssMI	GATC	3 cut(s)	47, 427, 540
BssNAI	GTATAC	1 cut(s)	210
BssNI	GRCGYC	1 cut(s)	39
BssSI	CACGAG	1 cut(s)	398
BssT1I	CCWWGG	2 cut(s)	316, 324
Bst1107I	GTATAC	1 cut(s)	210
Bst2BI	CACGAG	1 cut(s)	398
Bst4CI	ACNGT	2 cut(s)	296, 499
Bst6I	CTCTTC	2 cut(s)	387, 522
BstACI	GRCGYC	1 cut(s)	39
BstAFI	CTTAAG	1 cut(s)	83
BstC8I	GCNNGC	2 cut(s)	331, 451
BstDEI	CTNAG	4 cut(s)	16, 52, 434, 629
BstF5I	GGATG	1 cut(s)	287
BstKTI	GATC	3 cut(s)	50, 430, 543
BstMBI	GATC	3 cut(s)	47, 427, 540
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 578, 587
BstNSI	RCATGY	1 cut(s)	238
BstSFI	CTRYAG	1 cut(s)	504
BstV1I	GCAGC	1 cut(s)	250
BstX2I	RGATCY	2 cut(s)	47, 427
BstYI	RGATCY	2 cut(s)	47, 427
BstZ17I	GTATAC	1 cut(s)	210
BtsCI	GGATG	1 cut(s)	287
BtsIMutI	CAGTG	2 cut(s)	236, 504
Cac8I	GCNNGC	2 cut(s)	331, 451
Cfr13I	GGNCC	2 cut(s)	162, 321
CseI	GACGC	1 cut(s)	47
CviAII	CATG	1 cut(s)	235
DdeI	CTNAG	4 cut(s)	16, 52, 434, 629
DpnI	GATC	3 cut(s)	49, 429, 542
DpnII	GATC	3 cut(s)	47, 427, 540
DrdI	GACNNNNNNGTC	1 cut(s)	367
DseDI	GACNNNNNNGTC	1 cut(s)	367
Eam1104I	CTCTTC	2 cut(s)	387, 522
EarI	CTCTTC	2 cut(s)	387, 522
EciI	GGCGGA	1 cut(s)	604
Ecl136II	GAGCTC	1 cut(s)	15
Eco130I	CCWWGG	2 cut(s)	316, 324
Eco24I	GRGCYC	1 cut(s)	17
Eco47I	GGWCC	2 cut(s)	162, 321
Eco53kI	GAGCTC	1 cut(s)	15
EcoICRI	GAGCTC	1 cut(s)	15
EcoT14I	CCWWGG	2 cut(s)	316, 324
EcoT38I	GRGCYC	1 cut(s)	17
ErhI	CCWWGG	2 cut(s)	316, 324
FaeI	CATG	1 cut(s)	238
FaqI	GGGAC	1 cut(s)	334
FatI	CATG	1 cut(s)	234
FauNDI	CATATG	1 cut(s)	335
FbaI	TGATCA	1 cut(s)	540
FblI	GTMKAC	1 cut(s)	209
Fnu4HI	GCNGC	1 cut(s)	264
FokI	GGATG	1 cut(s)	274
FriOI	GRGCYC	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	264
FspBI	CTAG	2 cut(s)	275, 299
GluI	GCNGC	1 cut(s)	264
HgaI	GACGC	1 cut(s)	47
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	1 cut(s)	238
HincII	GTYRAC	1 cut(s)	372
HindII	GTYRAC	1 cut(s)	372
HindIII	AAGCTT	1 cut(s)	89
HinfI	GANTC	5 cut(s)	67, 278, 361, 380, 548
Hpy166II	GTNNAC	2 cut(s)	210, 372
Hpy188I	TCNGA	7 cut(s)	19, 47, 55, 72, 121, 283, 559
Hpy188III	TCNNGA	2 cut(s)	386, 425
Hpy8I	GTNNAC	2 cut(s)	210, 372
HpyCH4III	ACNGT	2 cut(s)	296, 499
HpyCH4V	TGCA	4 cut(s)	25, 175, 234, 572
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 578, 587
HpyF3I	CTNAG	4 cut(s)	16, 52, 434, 629
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	238
Ksp22I	TGATCA	1 cut(s)	540
Kzo9I	GATC	3 cut(s)	47, 427, 540
LguI	GCTCTTC	1 cut(s)	387
LmnI	GCTCC	1 cut(s)	12
LpnPI	CCDG	6 cut(s)	184, 242, 242, 410, 419, 489
Lsp1109I	GCAGC	1 cut(s)	250
LweI	GCATC	1 cut(s)	599
MaeI	CTAG	2 cut(s)	275, 299
MalI	GATC	3 cut(s)	49, 429, 542
MboI	GATC	3 cut(s)	47, 427, 540
MboII	GAAGA	4 cut(s)	401, 404, 502, 539
MflI	RGATCY	2 cut(s)	47, 427
MhlI	GDGCHC	2 cut(s)	17, 399
MluCI	AATT	3 cut(s)	20, 77, 122
MlyI	GAGTC	1 cut(s)	355
MmeI	TCCRAC	1 cut(s)	315
MnlI	CCTC	6 cut(s)	61, 196, 362, 370, 438, 627
MroXI	GAANNNNTTC	1 cut(s)	407
MseI	TTAA	6 cut(s)	84, 179, 224, 239, 533, 652
MspA1I	CMGCKG	1 cut(s)	418
MspCI	CTTAAG	1 cut(s)	83
MwoI	GCNNNNNNNGC	3 cut(s)	134, 578, 587
NdeI	CATATG	1 cut(s)	335
NdeII	GATC	3 cut(s)	47, 427, 540
NlaIII	CATG	1 cut(s)	238
NlaIV	GGNNCC	1 cut(s)	322
NmeAIII	GCCGAG	1 cut(s)	163
NspI	RCATGY	1 cut(s)	238
PciSI	GCTCTTC	1 cut(s)	387
PdmI	GAANNNNTTC	1 cut(s)	407
PfeI	GAWTC	4 cut(s)	67, 278, 380, 548
PkrI	GCNGC	1 cut(s)	265
PleI	GAGTC	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	355
Psp124BI	GAGCTC	1 cut(s)	17
PspN4I	GGNNCC	1 cut(s)	322
PspPI	GGNCC	2 cut(s)	162, 321
PsuI	RGATCY	2 cut(s)	47, 427
PvuII	CAGCTG	1 cut(s)	418
SacI	GAGCTC	1 cut(s)	17
SapI	GCTCTTC	1 cut(s)	387
SaqAI	TTAA	6 cut(s)	84, 179, 224, 239, 533, 652
SatI	GCNGC	1 cut(s)	264
Sau3AI	GATC	3 cut(s)	47, 427, 540
Sau96I	GGNCC	2 cut(s)	162, 321
SchI	GAGTC	1 cut(s)	355
SduI	GDGCHC	2 cut(s)	17, 399
SfaNI	GCATC	1 cut(s)	599
SfcI	CTRYAG	1 cut(s)	504
SinI	GGWCC	2 cut(s)	162, 321
SmlI	CTYRAG	2 cut(s)	83, 384
SmoI	CTYRAG	2 cut(s)	83, 384
Sse9I	AATT	3 cut(s)	20, 77, 122
SsiI	CCGC	1 cut(s)	615
SspMI	CTAG	2 cut(s)	275, 299
SstI	GAGCTC	1 cut(s)	17
StyI	CCWWGG	2 cut(s)	316, 324
TaaI	ACNGT	2 cut(s)	296, 499
TaqI	TCGA	1 cut(s)	191
TasI	AATT	3 cut(s)	20, 77, 122
TfiI	GAWTC	4 cut(s)	67, 278, 380, 548
Tru1I	TTAA	6 cut(s)	84, 179, 224, 239, 533, 652
Tru9I	TTAA	6 cut(s)	84, 179, 224, 239, 533, 652
TscAI	CASTG	2 cut(s)	236, 504
TseI	GCWGC	1 cut(s)	263
TspDTI	ATGAA	1 cut(s)	540
TspRI	CASTG	2 cut(s)	236, 504
Vha464I	CTTAAG	1 cut(s)	83
VpaK11BI	GGWCC	2 cut(s)	162, 321
XceI	RCATGY	1 cut(s)	238
XmiI	GTMKAC	1 cut(s)	209
XmnI	GAANNNNTTC	1 cut(s)	407
XspI	CTAG	2 cut(s)	275, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.