Rh4BG070900

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0017508
Physical Location & Seq
Reverse (-)
12570925 .. 12571371
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG070900.1

Sequence Viewer

Length: 447 bp
ATGCAGCAACACACCTCACAAACCAACGGATCACCGTCTCCTTCAAGCAACATGAATACACTTGCCACCTTTTCCCTTTTCCTTCTGTTGACACTACACCTTGTTGGCTCGTCAACGGCTGATTACAAAGCAAACGTCTTTAACAACTTGCCCGGAAACGCCAACCTGACTGTTCATTGTAAATCTGCAGGTTCAGACTTGGGCACGCAAACTATCACCTATTTACATGACTTCACCTGGACCATCAACAACATTTTAAACTGCGACATGAGTTGGGGCAATGTGAAGGGGAATTTTGATATCTTTGATCCGAAAAGGGATGCATCAAGGTGTGCTTATGGTAACACTTGCTTTTGGCGAGTGAAGGAGGATGGCTTGTATCTCTTCATCAAGGAGCATAAGAGGTTGGAGTTGCAGTTTAAATGGCCAGGAAAGATTTTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

148

Amino Acids

16.67

Weight (kDa)

8.37

Isoelectric Point (pI)

28.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 45 - 142 9.5e-20 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017508)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24065 AT3G24068
prunus_persica Prupe.1G060200_v2.0.a1
pyrus_communis pycom16g19650
rosa_chinensis RchiOBHm_Chr4g0396871
rosa_laevigata RLG00000009498
rosa_rugosa Rorug03G0346800
rosa_samantha Rh4AG074200 Rh4BG070900 Rh4CG079000 Rh4DG068200
rosa_wichuraiana Rw4G005970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 179
AclWI GGATC 2 cut(s) 37, 302
AcoI YGGCCR 1 cut(s) 425
AcsI RAATTY 1 cut(s) 292
AgsI TTSAA 1 cut(s) 45
AjnI CCWGG 2 cut(s) 236, 427
Alw26I GTCTC 1 cut(s) 42
AlwI GGATC 2 cut(s) 37, 302
AoxI GGCC 1 cut(s) 425
ApeKI GCWGC 1 cut(s) 4
ApoI RAATTY 1 cut(s) 292
ArsI GACNNNNNNTTYG 2 cut(s) 120, 152
AspS9I GGNCC 1 cut(s) 240
AsuC2I CCSGG 1 cut(s) 153
AsuHPI GGTGA 3 cut(s) 24, 208, 226
AvaII GGWCC 1 cut(s) 240
BaeGI GKGCMC 1 cut(s) 206
BalI TGGCCA 1 cut(s) 427
BbvI GCAGC 1 cut(s) 16
BccI CCATC 2 cut(s) 251, 365
BceAI ACGGC 1 cut(s) 132
BciT130I CCWGG 2 cut(s) 238, 429
BcnI CCSGG 1 cut(s) 153
BcoDI GTCTC 1 cut(s) 42
BfmI CTRYAG 1 cut(s) 186
BfuAI ACCTGC 1 cut(s) 179
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme1390I CCNGG 3 cut(s) 153, 238, 429
Bme18I GGWCC 1 cut(s) 240
BmgT120I GGNCC 1 cut(s) 240
BmrFI CCNGG 3 cut(s) 153, 238, 429
BmsI GCATC 2 cut(s) 310, 332
BpuMI CCSGG 1 cut(s) 153
BsaXI ACNNNNNCTCC 2 cut(s) 401, 431
Bse3DI GCAATG 1 cut(s) 286
BseBI CCWGG 2 cut(s) 238, 429
BseGI GGATG 2 cut(s) 325, 376
BseMI GCAATG 1 cut(s) 286
BseSI GKGCMC 1 cut(s) 206
BseXI GCAGC 1 cut(s) 16
BshFI GGCC 1 cut(s) 427
BsiSI CCGG 1 cut(s) 153
BsmAI GTCTC 1 cut(s) 42
BsmBI CGTCTC 1 cut(s) 42
BsnI GGCC 1 cut(s) 427
Bsp1286I GDGCHC 1 cut(s) 206
Bsp143I GATC 2 cut(s) 29, 307
BspANI GGCC 1 cut(s) 427
BspMAI CTGCAG 1 cut(s) 190
BspMI ACCTGC 1 cut(s) 179
BspPI GGATC 2 cut(s) 37, 302
BsrDI GCAATG 1 cut(s) 286
BssMI GATC 2 cut(s) 29, 307
Bst2UI CCWGG 2 cut(s) 238, 429
Bst4CI ACNGT 2 cut(s) 36, 172
Bst6I CTCTTC 1 cut(s) 389
BstC8I GCNNGC 1 cut(s) 206
BstDEI CTNAG 1 cut(s) 444
BstF5I GGATG 2 cut(s) 325, 376
BstKTI GATC 2 cut(s) 32, 310
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 2 cut(s) 29, 307
BstNI CCWGG 2 cut(s) 238, 429
BstSCI CCNGG 3 cut(s) 151, 236, 427
BstSFI CTRYAG 1 cut(s) 186
BstSLI GKGCMC 1 cut(s) 206
BstV1I GCAGC 1 cut(s) 16
BsuRI GGCC 1 cut(s) 427
BtsCI GGATG 2 cut(s) 325, 376
BveI ACCTGC 1 cut(s) 179
Cac8I GCNNGC 1 cut(s) 206
Cfr13I GGNCC 1 cut(s) 240
CviAII CATG 3 cut(s) 52, 227, 268
CviJI RGCY 4 cut(s) 108, 119, 375, 427
CviKI_1 RGCY 4 cut(s) 108, 119, 375, 427
DdeI CTNAG 1 cut(s) 444
DpnI GATC 2 cut(s) 31, 309
DpnII GATC 2 cut(s) 29, 307
DraI TTTAAA 2 cut(s) 258, 421
EaeI YGGCCR 1 cut(s) 425
Eam1104I CTCTTC 1 cut(s) 389
EarI CTCTTC 1 cut(s) 389
Eco32I GATATC 1 cut(s) 301
Eco47I GGWCC 1 cut(s) 240
EcoRII CCWGG 2 cut(s) 236, 427
EcoRV GATATC 1 cut(s) 301
EcoT22I ATGCAT 1 cut(s) 325
Esp3I CGTCTC 1 cut(s) 42
FaeI CATG 3 cut(s) 55, 230, 271
FaiI YATR 5 cut(s) 53, 228, 269, 339, 399
FalI AAGNNNNNCTT 2 cut(s) 319, 351
FatI CATG 3 cut(s) 51, 226, 267
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 2 cut(s) 332, 383
Fsp4HI GCNGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 5
HaeIII GGCC 1 cut(s) 427
HapII CCGG 1 cut(s) 153
Hin1II CATG 3 cut(s) 55, 230, 271
HincII GTYRAC 2 cut(s) 90, 114
HindII GTYRAC 2 cut(s) 90, 114
HpaII CCGG 1 cut(s) 153
HphI GGTGA 3 cut(s) 24, 208, 226
Hpy166II GTNNAC 2 cut(s) 90, 114
Hpy188I TCNGA 2 cut(s) 196, 312
Hpy8I GTNNAC 2 cut(s) 90, 114
HpyAV CCTTC 4 cut(s) 51, 92, 280, 358
HpyCH4III ACNGT 2 cut(s) 36, 172
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 4 cut(s) 4, 188, 323, 415
HpyF3I CTNAG 1 cut(s) 444
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 3 cut(s) 55, 230, 271
Kzo9I GATC 2 cut(s) 29, 307
LmnI GCTCC 1 cut(s) 394
LpnPI CCDG 7 cut(s) 166, 174, 179, 223, 250, 414, 441
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 2 cut(s) 310, 332
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 341
MalI GATC 2 cut(s) 31, 309
MboI GATC 2 cut(s) 29, 307
MboII GAAGA 1 cut(s) 376
MhlI GDGCHC 1 cut(s) 206
MlsI TGGCCA 1 cut(s) 427
MluCI AATT 1 cut(s) 292
MluNI TGGCCA 1 cut(s) 427
MmeI TCCRAC 1 cut(s) 387
MnlI CCTC 3 cut(s) 25, 361, 396
Mox20I TGGCCA 1 cut(s) 427
Mph1103I ATGCAT 1 cut(s) 325
MscI TGGCCA 1 cut(s) 427
MseI TTAA 3 cut(s) 141, 257, 420
MslI CAYNNNNRTG 1 cut(s) 328
Msp20I TGGCCA 1 cut(s) 427
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 3 cut(s) 153, 238, 429
MvaI CCWGG 2 cut(s) 238, 429
NciI CCSGG 1 cut(s) 153
NdeII GATC 2 cut(s) 29, 307
NlaIII CATG 3 cut(s) 55, 230, 271
NsiI ATGCAT 1 cut(s) 325
PkrI GCNGC 1 cut(s) 6
Psp6I CCWGG 2 cut(s) 236, 427
PspGI CCWGG 2 cut(s) 236, 427
PspPI GGNCC 1 cut(s) 240
PstI CTGCAG 1 cut(s) 190
RseI CAYNNNNRTG 1 cut(s) 328
SaqAI TTAA 3 cut(s) 141, 257, 420
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 2 cut(s) 29, 307
Sau96I GGNCC 1 cut(s) 240
ScrFI CCNGG 3 cut(s) 153, 238, 429
SduI GDGCHC 1 cut(s) 206
SfaNI GCATC 2 cut(s) 310, 332
SfcI CTRYAG 1 cut(s) 186
SinI GGWCC 1 cut(s) 240
SmiMI CAYNNNNRTG 1 cut(s) 328
Sse9I AATT 1 cut(s) 292
StyD4I CCNGG 3 cut(s) 151, 236, 427
TaaI ACNGT 2 cut(s) 36, 172
TaiI ACGT 1 cut(s) 138
TasI AATT 1 cut(s) 292
Tru1I TTAA 3 cut(s) 141, 257, 420
Tru9I TTAA 3 cut(s) 141, 257, 420
TseI GCWGC 1 cut(s) 4
TspDTI ATGAA 3 cut(s) 68, 164, 376
TspGWI ACGGA 1 cut(s) 42
VpaK11BI GGWCC 1 cut(s) 240
XapI RAATTY 1 cut(s) 292
Zsp2I ATGCAT 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.