Rw4G005970

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0017508
Physical Location & Seq
Reverse (-)
12096635 .. 12097030
396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G005970.1

Sequence Viewer

Length: 396 bp
ATGAATACACTTGCCACCTTTTCCCTTTTCCTTCTGTTGACACTACACCTTGTTGGCTCGTCAACGGCTGATTACAAAGCAAACGTCTTTAACAACTTGCCCGGAAACGCCAACCTGACTGTTCATTGTAAATCTGCAGGTTCAGACTTGGGCACGCAAACTATCACCTATTTACATGACTTCACCTGGACCATCAACAACATTTTAAACTGCGACATGAGTTGGGGCAATGTGAAGGGGAATTTTGATATCTTTGATCCGAAAAGGGATGCATCAAGGTGTGCTTATGGTAACACTTGCTTTTGGCGAGTGAAGGAGGATGGCTTGTATCTCTTCATCAAGGAGCATAAGAGGTTGGAGTTGCAGTTTAAATGGCCAGGAAAGATTTTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

131

Amino Acids

14.9

Weight (kDa)

8.37

Isoelectric Point (pI)

20.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 28 - 125 6.4e-20 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017508)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24065 AT3G24068
prunus_persica Prupe.1G060200_v2.0.a1
pyrus_communis pycom16g19650
rosa_chinensis RchiOBHm_Chr4g0396871
rosa_laevigata RLG00000009498
rosa_rugosa Rorug03G0346800
rosa_samantha Rh4AG074200 Rh4BG070900 Rh4CG079000 Rh4DG068200
rosa_wichuraiana Rw4G005970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 128
AclWI GGATC 1 cut(s) 251
AcoI YGGCCR 1 cut(s) 374
AcsI RAATTY 1 cut(s) 241
AjnI CCWGG 2 cut(s) 185, 376
AlwI GGATC 1 cut(s) 251
AoxI GGCC 1 cut(s) 374
ApoI RAATTY 1 cut(s) 241
ArsI GACNNNNNNTTYG 2 cut(s) 69, 101
AspS9I GGNCC 1 cut(s) 189
AsuC2I CCSGG 1 cut(s) 102
AsuHPI GGTGA 2 cut(s) 157, 175
AvaII GGWCC 1 cut(s) 189
BaeGI GKGCMC 1 cut(s) 155
BalI TGGCCA 1 cut(s) 376
BccI CCATC 2 cut(s) 200, 314
BceAI ACGGC 1 cut(s) 81
BciT130I CCWGG 2 cut(s) 187, 378
BcnI CCSGG 1 cut(s) 102
BfmI CTRYAG 1 cut(s) 135
BfuAI ACCTGC 1 cut(s) 128
Bme1390I CCNGG 3 cut(s) 102, 187, 378
Bme18I GGWCC 1 cut(s) 189
BmgT120I GGNCC 1 cut(s) 189
BmrFI CCNGG 3 cut(s) 102, 187, 378
BmsI GCATC 2 cut(s) 259, 281
BpuMI CCSGG 1 cut(s) 102
BsaXI ACNNNNNCTCC 2 cut(s) 350, 380
Bse3DI GCAATG 1 cut(s) 235
BseBI CCWGG 2 cut(s) 187, 378
BseGI GGATG 2 cut(s) 274, 325
BseMI GCAATG 1 cut(s) 235
BseSI GKGCMC 1 cut(s) 155
BshFI GGCC 1 cut(s) 376
BsiSI CCGG 1 cut(s) 102
BsnI GGCC 1 cut(s) 376
Bsp1286I GDGCHC 1 cut(s) 155
Bsp143I GATC 1 cut(s) 256
BspANI GGCC 1 cut(s) 376
BspMAI CTGCAG 1 cut(s) 139
BspMI ACCTGC 1 cut(s) 128
BspPI GGATC 1 cut(s) 251
BsrDI GCAATG 1 cut(s) 235
BssMI GATC 1 cut(s) 256
Bst2UI CCWGG 2 cut(s) 187, 378
Bst4CI ACNGT 1 cut(s) 121
Bst6I CTCTTC 1 cut(s) 338
BstC8I GCNNGC 1 cut(s) 155
BstDEI CTNAG 1 cut(s) 393
BstF5I GGATG 2 cut(s) 274, 325
BstKTI GATC 1 cut(s) 259
BstMBI GATC 1 cut(s) 256
BstNI CCWGG 2 cut(s) 187, 378
BstSCI CCNGG 3 cut(s) 100, 185, 376
BstSFI CTRYAG 1 cut(s) 135
BstSLI GKGCMC 1 cut(s) 155
BsuRI GGCC 1 cut(s) 376
BtsCI GGATG 2 cut(s) 274, 325
BveI ACCTGC 1 cut(s) 128
Cac8I GCNNGC 1 cut(s) 155
Cfr13I GGNCC 1 cut(s) 189
CviAII CATG 2 cut(s) 176, 217
CviJI RGCY 4 cut(s) 57, 68, 324, 376
CviKI_1 RGCY 4 cut(s) 57, 68, 324, 376
DdeI CTNAG 1 cut(s) 393
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
DraI TTTAAA 2 cut(s) 207, 370
EaeI YGGCCR 1 cut(s) 374
Eam1104I CTCTTC 1 cut(s) 338
EarI CTCTTC 1 cut(s) 338
Eco32I GATATC 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 189
EcoRII CCWGG 2 cut(s) 185, 376
EcoRV GATATC 1 cut(s) 250
EcoT22I ATGCAT 1 cut(s) 274
FaeI CATG 2 cut(s) 179, 220
FaiI YATR 4 cut(s) 177, 218, 288, 348
FalI AAGNNNNNCTT 2 cut(s) 268, 300
FatI CATG 2 cut(s) 175, 216
FokI GGATG 2 cut(s) 281, 332
HaeIII GGCC 1 cut(s) 376
HapII CCGG 1 cut(s) 102
Hin1II CATG 2 cut(s) 179, 220
HincII GTYRAC 2 cut(s) 39, 63
HindII GTYRAC 2 cut(s) 39, 63
HpaII CCGG 1 cut(s) 102
HphI GGTGA 2 cut(s) 157, 175
Hpy166II GTNNAC 2 cut(s) 39, 63
Hpy188I TCNGA 2 cut(s) 145, 261
Hpy8I GTNNAC 2 cut(s) 39, 63
HpyAV CCTTC 3 cut(s) 41, 229, 307
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 3 cut(s) 137, 272, 364
HpyF3I CTNAG 1 cut(s) 393
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 2 cut(s) 179, 220
Kzo9I GATC 1 cut(s) 256
LmnI GCTCC 1 cut(s) 343
LpnPI CCDG 7 cut(s) 115, 123, 128, 172, 199, 363, 390
LweI GCATC 2 cut(s) 259, 281
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 290
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MboII GAAGA 1 cut(s) 325
MhlI GDGCHC 1 cut(s) 155
MlsI TGGCCA 1 cut(s) 376
MluCI AATT 1 cut(s) 241
MluNI TGGCCA 1 cut(s) 376
MmeI TCCRAC 1 cut(s) 336
MnlI CCTC 2 cut(s) 310, 345
Mox20I TGGCCA 1 cut(s) 376
Mph1103I ATGCAT 1 cut(s) 274
MscI TGGCCA 1 cut(s) 376
MseI TTAA 3 cut(s) 90, 206, 369
MslI CAYNNNNRTG 1 cut(s) 277
Msp20I TGGCCA 1 cut(s) 376
MspI CCGG 1 cut(s) 102
MspR9I CCNGG 3 cut(s) 102, 187, 378
MvaI CCWGG 2 cut(s) 187, 378
NciI CCSGG 1 cut(s) 102
NdeII GATC 1 cut(s) 256
NlaIII CATG 2 cut(s) 179, 220
NsiI ATGCAT 1 cut(s) 274
Psp6I CCWGG 2 cut(s) 185, 376
PspGI CCWGG 2 cut(s) 185, 376
PspPI GGNCC 1 cut(s) 189
PstI CTGCAG 1 cut(s) 139
RseI CAYNNNNRTG 1 cut(s) 277
SaqAI TTAA 3 cut(s) 90, 206, 369
Sau3AI GATC 1 cut(s) 256
Sau96I GGNCC 1 cut(s) 189
ScrFI CCNGG 3 cut(s) 102, 187, 378
SduI GDGCHC 1 cut(s) 155
SetI ASST 9 cut(s) 20, 51, 87, 117, 142, 170, 188, 281, 356
SfaNI GCATC 2 cut(s) 259, 281
SfcI CTRYAG 1 cut(s) 135
SinI GGWCC 1 cut(s) 189
SmiMI CAYNNNNRTG 1 cut(s) 277
Sse9I AATT 1 cut(s) 241
StyD4I CCNGG 3 cut(s) 100, 185, 376
TaaI ACNGT 1 cut(s) 121
TaiI ACGT 1 cut(s) 87
TasI AATT 1 cut(s) 241
Tru1I TTAA 3 cut(s) 90, 206, 369
Tru9I TTAA 3 cut(s) 90, 206, 369
TspDTI ATGAA 3 cut(s) 17, 113, 325
VpaK11BI GGWCC 1 cut(s) 189
XapI RAATTY 1 cut(s) 241
Zsp2I ATGCAT 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.