Rh4AG074200

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0017508
Physical Location & Seq
Forward (+)
15197885 .. 15205066
7182 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG074200.1

Sequence Viewer

Length: 369 bp
ATGAATACACTTGCCACCTTTTCCCTTTTCCTTCTGTTGACACTACACCTTGTTGGCTCGTCAACGGCTGATTACAAAGCAAACGTCTTTAACAACTTGCCCGGAAACGCCAACCTGACTGTTCATTGTAAATCTGCAGGTTCAGACTTGGGCACGCAAACTATCACCTATTTACATGACTTCACCTGGACCATCAACAACATTTTAAACTGCGACATGAGTTGGGGCAATGTGAAGGGGAATTTTGATATCTTTGATCCGAAAAGGGATGCATCAAGGTGTGCTTATGTCACCTCTCAATTCTCCGAGTTGTGCCGACCTCATTTCTCCGATTGGAAGAGAAGCAATAAAGAAAAGGAGAATAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

122

Amino Acids

13.77

Weight (kDa)

6.88

Isoelectric Point (pI)

29.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 28 - 96 5.4e-11 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017508)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24065 AT3G24068
prunus_persica Prupe.1G060200_v2.0.a1
pyrus_communis pycom16g19650
rosa_chinensis RchiOBHm_Chr4g0396871
rosa_laevigata RLG00000009498
rosa_rugosa Rorug03G0346800
rosa_samantha Rh4AG074200 Rh4BG070900 Rh4CG079000 Rh4DG068200
rosa_wichuraiana Rw4G005970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 128
AclWI GGATC 1 cut(s) 251
AcsI RAATTY 1 cut(s) 241
AjnI CCWGG 1 cut(s) 185
AlwI GGATC 1 cut(s) 251
ApoI RAATTY 1 cut(s) 241
ArsI GACNNNNNNTTYG 2 cut(s) 69, 101
AspS9I GGNCC 1 cut(s) 189
AsuC2I CCSGG 1 cut(s) 102
AsuHPI GGTGA 3 cut(s) 157, 175, 283
AvaII GGWCC 1 cut(s) 189
BaeGI GKGCMC 1 cut(s) 155
BccI CCATC 1 cut(s) 200
BceAI ACGGC 1 cut(s) 81
BciT130I CCWGG 1 cut(s) 187
BcnI CCSGG 1 cut(s) 102
BfmI CTRYAG 1 cut(s) 135
BfuAI ACCTGC 1 cut(s) 128
Bme1390I CCNGG 2 cut(s) 102, 187
Bme18I GGWCC 1 cut(s) 189
BmgT120I GGNCC 1 cut(s) 189
BmrFI CCNGG 2 cut(s) 102, 187
BmsI GCATC 2 cut(s) 259, 281
BpuMI CCSGG 1 cut(s) 102
Bse3DI GCAATG 1 cut(s) 235
BseBI CCWGG 1 cut(s) 187
BseGI GGATG 1 cut(s) 274
BseMI GCAATG 1 cut(s) 235
BseSI GKGCMC 1 cut(s) 155
BsiSI CCGG 1 cut(s) 102
Bsp1286I GDGCHC 1 cut(s) 155
Bsp143I GATC 1 cut(s) 256
BspMAI CTGCAG 1 cut(s) 139
BspMI ACCTGC 1 cut(s) 128
BspPI GGATC 1 cut(s) 251
BsrDI GCAATG 1 cut(s) 235
BssMI GATC 1 cut(s) 256
Bst2UI CCWGG 1 cut(s) 187
Bst4CI ACNGT 1 cut(s) 121
Bst6I CTCTTC 1 cut(s) 332
BstC8I GCNNGC 1 cut(s) 155
BstF5I GGATG 1 cut(s) 274
BstKTI GATC 1 cut(s) 259
BstMBI GATC 1 cut(s) 256
BstNI CCWGG 1 cut(s) 187
BstSCI CCNGG 2 cut(s) 100, 185
BstSFI CTRYAG 1 cut(s) 135
BstSLI GKGCMC 1 cut(s) 155
BtsCI GGATG 1 cut(s) 274
BveI ACCTGC 1 cut(s) 128
Cac8I GCNNGC 1 cut(s) 155
Cfr13I GGNCC 1 cut(s) 189
CviAII CATG 2 cut(s) 176, 217
CviJI RGCY 2 cut(s) 57, 68
CviKI_1 RGCY 2 cut(s) 57, 68
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
DraI TTTAAA 1 cut(s) 207
Eam1104I CTCTTC 1 cut(s) 332
EarI CTCTTC 1 cut(s) 332
Eco32I GATATC 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 189
EcoRII CCWGG 1 cut(s) 185
EcoRV GATATC 1 cut(s) 250
EcoT22I ATGCAT 1 cut(s) 274
FaeI CATG 2 cut(s) 179, 220
FaiI YATR 3 cut(s) 177, 218, 288
FalI AAGNNNNNCTT 2 cut(s) 268, 300
FatI CATG 2 cut(s) 175, 216
FokI GGATG 1 cut(s) 281
HapII CCGG 1 cut(s) 102
Hin1II CATG 2 cut(s) 179, 220
HincII GTYRAC 2 cut(s) 39, 63
HindII GTYRAC 2 cut(s) 39, 63
HpaII CCGG 1 cut(s) 102
HphI GGTGA 3 cut(s) 157, 175, 283
Hpy166II GTNNAC 2 cut(s) 39, 63
Hpy188I TCNGA 4 cut(s) 145, 261, 307, 331
Hpy8I GTNNAC 2 cut(s) 39, 63
HpyAV CCTTC 2 cut(s) 41, 229
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 2 cut(s) 137, 272
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 2 cut(s) 179, 220
Kzo9I GATC 1 cut(s) 256
LpnPI CCDG 5 cut(s) 115, 123, 128, 172, 199
LweI GCATC 2 cut(s) 259, 281
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 289
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MboII GAAGA 1 cut(s) 349
MhlI GDGCHC 1 cut(s) 155
MluCI AATT 3 cut(s) 241, 299, 364
MnlI CCTC 2 cut(s) 304, 330
Mph1103I ATGCAT 1 cut(s) 274
MseI TTAA 2 cut(s) 90, 206
MslI CAYNNNNRTG 1 cut(s) 277
MspI CCGG 1 cut(s) 102
MspR9I CCNGG 2 cut(s) 102, 187
MvaI CCWGG 1 cut(s) 187
NciI CCSGG 1 cut(s) 102
NdeII GATC 1 cut(s) 256
NlaIII CATG 2 cut(s) 179, 220
NmuCI GTSAC 1 cut(s) 289
NsiI ATGCAT 1 cut(s) 274
Psp6I CCWGG 1 cut(s) 185
PspGI CCWGG 1 cut(s) 185
PspPI GGNCC 1 cut(s) 189
PstI CTGCAG 1 cut(s) 139
RseI CAYNNNNRTG 1 cut(s) 277
SaqAI TTAA 2 cut(s) 90, 206
Sau3AI GATC 1 cut(s) 256
Sau96I GGNCC 1 cut(s) 189
ScrFI CCNGG 2 cut(s) 102, 187
SduI GDGCHC 1 cut(s) 155
SfaNI GCATC 2 cut(s) 259, 281
SfcI CTRYAG 1 cut(s) 135
SinI GGWCC 1 cut(s) 189
SmiMI CAYNNNNRTG 1 cut(s) 277
Sse9I AATT 3 cut(s) 241, 299, 364
StyD4I CCNGG 2 cut(s) 100, 185
TaaI ACNGT 1 cut(s) 121
TaiI ACGT 1 cut(s) 87
TasI AATT 3 cut(s) 241, 299, 364
Tru1I TTAA 2 cut(s) 90, 206
Tru9I TTAA 2 cut(s) 90, 206
TseFI GTSAC 1 cut(s) 289
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 2 cut(s) 17, 113
VpaK11BI GGWCC 1 cut(s) 189
XapI RAATTY 1 cut(s) 241
Zsp2I ATGCAT 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.