Prupe.1G073300_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
5229297 .. 5230286
990 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G073300.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 267 bp
ATGGAGGCTCACAAAGAGAGAAGAGAGCAGATGATGGAGGAAGAGTCAAAGAGAAAAGAAGGAGGAAAGAAGAATGGTGCTGCTGGGTCTGCAGAAAGCTTGTGCAAGAAGAAAACCAATGATGGATTTGACCCAGCGGCCAAAGCAATCATTGAAGAATGCATAATCAGCCATGAGGGTGAAGAGGGTGGTGGAAGAGCTAAAAACCCCGATGATGTTCTTGCCTTTTCCAGATCTGTTAACAAAATTGACTCTTCACTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.59

Weight (kDa)

5.48

Isoelectric Point (pI)

66.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018328)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19320
fragaria_vesca FvH4_4g06990
prunus_persica Prupe.1G073300_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0214671
rosa_multiflora Rmu_sc0003033.1_g000070
rosa_roxburghii Rroxscaffold_5G00344070
rosa_rugosa Rorug04G0013900
rosa_samantha Rh4BG089800 Rh4DG084400
rosa_wichuraiana Rw4G007580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 137
AcoI YGGCCR 1 cut(s) 138
AgsI TTSAA 1 cut(s) 155
AleI CACNNNNGTG 1 cut(s) 262
AluBI AGCT 2 cut(s) 99, 200
AluI AGCT 2 cut(s) 99, 200
AoxI GGCC 1 cut(s) 138
ApeKI GCWGC 1 cut(s) 80
AsuHPI GGTGA 1 cut(s) 191
BbvI GCAGC 1 cut(s) 67
BccI CCATC 2 cut(s) 28, 116
BfmI CTRYAG 1 cut(s) 90
BglII AGATCT 1 cut(s) 233
BisI GCNGC 2 cut(s) 81, 138
BlsI GCNGC 2 cut(s) 82, 139
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
BseXI GCAGC 1 cut(s) 67
BseYI CCCAGC 2 cut(s) 83, 133
BshFI GGCC 1 cut(s) 140
BsmI GAATGC 1 cut(s) 164
BsnI GGCC 1 cut(s) 140
Bsp143I GATC 1 cut(s) 233
BspACI CCGC 1 cut(s) 137
BspANI GGCC 1 cut(s) 140
BspMAI CTGCAG 1 cut(s) 94
BspQI GCTCTTC 1 cut(s) 190
BssMI GATC 1 cut(s) 233
Bst6I CTCTTC 5 cut(s) 16, 36, 177, 190, 259
BstKTI GATC 1 cut(s) 236
BstMBI GATC 1 cut(s) 233
BstMWI GCNNNNNNNGC 3 cut(s) 89, 143, 168
BstSFI CTRYAG 1 cut(s) 90
BstV1I GCAGC 1 cut(s) 67
BstX2I RGATCY 1 cut(s) 233
BstYI RGATCY 1 cut(s) 233
BsuRI GGCC 1 cut(s) 140
CviAII CATG 1 cut(s) 173
CviJI RGCY 5 cut(s) 8, 99, 140, 171, 200
CviKI_1 RGCY 5 cut(s) 8, 99, 140, 171, 200
DpnI GATC 1 cut(s) 235
DpnII GATC 1 cut(s) 233
EaeI YGGCCR 1 cut(s) 138
Eam1104I CTCTTC 5 cut(s) 16, 36, 177, 190, 259
EarI CTCTTC 5 cut(s) 16, 36, 177, 190, 259
EcoT22I ATGCAT 1 cut(s) 164
FaeI CATG 1 cut(s) 176
FaiI YATR 2 cut(s) 164, 174
FatI CATG 1 cut(s) 172
Fnu4HI GCNGC 2 cut(s) 81, 138
Fsp4HI GCNGC 2 cut(s) 81, 138
GluI GCNGC 2 cut(s) 81, 138
GsaI CCCAGC 2 cut(s) 87, 137
HaeIII GGCC 1 cut(s) 140
Hin1II CATG 1 cut(s) 176
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HindIII AAGCTT 1 cut(s) 97
HinfI GANTC 2 cut(s) 44, 251
HpaI GTTAAC 1 cut(s) 241
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 1 cut(s) 241
Hpy188III TCNNGA 1 cut(s) 231
Hpy8I GTNNAC 1 cut(s) 241
HpyAV CCTTC 1 cut(s) 53
HpyCH4V TGCA 3 cut(s) 92, 105, 162
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 143, 168
Hsp92II CATG 1 cut(s) 176
KspAI GTTAAC 1 cut(s) 241
Kzo9I GATC 1 cut(s) 233
LguI GCTCTTC 1 cut(s) 190
LpnPI CCDG 3 cut(s) 69, 147, 244
Lsp1109I GCAGC 1 cut(s) 67
MalI GATC 1 cut(s) 235
MboI GATC 1 cut(s) 233
MboII GAAGA 8 cut(s) 33, 53, 82, 121, 167, 194, 207, 246
MflI RGATCY 1 cut(s) 233
MluCI AATT 1 cut(s) 246
MlyI GAGTC 2 cut(s) 53, 245
MnlI CCTC 4 cut(s) 31, 56, 169, 178
Mph1103I ATGCAT 1 cut(s) 164
MseI TTAA 1 cut(s) 240
MslI CAYNNNNRTG 2 cut(s) 177, 262
MspA1I CMGCKG 1 cut(s) 137
Mva1269I GAATGC 1 cut(s) 164
MwoI GCNNNNNNNGC 3 cut(s) 89, 143, 168
NdeII GATC 1 cut(s) 233
NlaIII CATG 1 cut(s) 176
NsiI ATGCAT 1 cut(s) 164
OliI CACNNNNGTG 1 cut(s) 262
PciSI GCTCTTC 1 cut(s) 190
PctI GAATGC 1 cut(s) 164
PkrI GCNGC 2 cut(s) 82, 139
PleI GAGTC 2 cut(s) 52, 245
PpsI GAGTC 2 cut(s) 52, 245
PspFI CCCAGC 2 cut(s) 83, 133
PstI CTGCAG 1 cut(s) 94
PsuI RGATCY 1 cut(s) 233
RseI CAYNNNNRTG 2 cut(s) 177, 262
SapI GCTCTTC 1 cut(s) 190
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 2 cut(s) 81, 138
Sau3AI GATC 1 cut(s) 233
SchI GAGTC 2 cut(s) 53, 245
SetI ASST 2 cut(s) 101, 202
SfcI CTRYAG 1 cut(s) 90
SgeI CNNG 8 cut(s) 96, 112, 118, 146, 185, 221, 233, 243
SmiMI CAYNNNNRTG 2 cut(s) 177, 262
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
Sse9I AATT 1 cut(s) 246
SsiI CCGC 1 cut(s) 137
TasI AATT 1 cut(s) 246
TauI GCSGC 1 cut(s) 140
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TseI GCWGC 1 cut(s) 80
Zsp2I ATGCAT 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.