Prupe.1G092000_v2.0.a1

At4g14100-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015595
Physical Location & Seq
Forward (+)
6954789 .. 6956325
1537 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G092000.1

Sequence Viewer

Length: 729 bp
ATGGGCCCCTTCTTGTATATGGGTAAAGCGAACACATCTTTGCTTCTCCACCGCTCAGTTGTATTATCCACTTCACTCAAAACTCTTTATAAGAACCCCAAAAAGACAAAAAAAGACGAAAAAAAAATGTCCAGCACCAGAAGAAGCAGAGAGAGAACGATGAAGCAGCTCAATCTGGCACTACAAATATGCTTAACGACCTCTCTGATACTACAGCTAGTCACTTGCTCAAACTTAACCCCAACGCCCAACCCATGGCCAGACCAATTCCATGCACTTTTGTTTATGAACTTGAGCACAACAAAGCTGCAGCTCAGTGACCTCTGGTATGACTGGCCTAAGGGCCGAAATGTCAACATATTTCAGAAGCAGCTGGGTGAGGTTTTGTACGACGTAGAGTGGAACAACGGCACGTCGTTTTACTACACCCTAGGGCAAAATGGAGCATGTGAGGTTATGGAGTTTGAAGTTGGCATTCCTAGGCCTGATTTTCTTCTTGATGGGGCACACTATCTTGGGACTGTAGTCACAGATGGGTTTCTTTGCAATGTGTGGGAGAAGGCGGATTTTATTTGGTATTATGAGGATGTTTACACTAGGAGGCCAGTTCGCTGGGATTTCTATGATGGAATATCTAGTCAGGTGATGACATTTGAGGTTGGTGCAGTTTTGCCAGATTCAGTGACTCAAGCACCTGCATACTGCTTCAACCAAGAGAAAGATGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

243

Amino Acids

27.89

Weight (kDa)

6.82

Isoelectric Point (pI)

44.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015595)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g08920 FvH4_4g08920 FvH4_4g08920
malus_domestica MD13G1264800.v1.1
prunus_persica Prupe.1G092000_v2.0.a1
pyrus_communis pycom13g23700
rosa_chinensis RchiOBHm_Chr4g0403651
rosa_laevigata RLG00000008962
rosa_multiflora Rmu_co8223106.1_g000001
rosa_roxburghii Rroxscaffold_5G00348250
rosa_rugosa Rorug04G0044800
rosa_samantha Rh4AG119800 Rh4BG113100 Rh4CG128000 Rh4DG112500
rosa_wichuraiana Rw4G009730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 90
AarI CACCTGC 1 cut(s) 703
Acc36I ACCTGC 1 cut(s) 703
AccB7I CCANNNNNTGG 1 cut(s) 255
AccBSI CCGCTC 1 cut(s) 54
AciI CCGC 2 cut(s) 52, 563
AcoI YGGCCR 1 cut(s) 257
AfaI GTAC 1 cut(s) 389
AfiI CCNNNNNNNGG 1 cut(s) 255
AgsI TTSAA 2 cut(s) 467, 709
AjiI CACGTC 1 cut(s) 414
AluBI AGCT 5 cut(s) 169, 217, 307, 313, 373
AluI AGCT 5 cut(s) 169, 217, 307, 313, 373
Alw21I GWGCWC 1 cut(s) 299
AoxI GGCC 6 cut(s) 4, 257, 335, 343, 482, 602
ApaI GGGCCC 1 cut(s) 8
ApeKI GCWGC 4 cut(s) 166, 307, 310, 370
AspA2I CCTAGG 2 cut(s) 430, 479
AspS9I GGNCC 3 cut(s) 4, 5, 343
AsuHPI GGTGA 2 cut(s) 389, 655
AvrII CCTAGG 2 cut(s) 430, 479
AxyI CCTNAGG 1 cut(s) 339
BaeGI GKGCMC 2 cut(s) 8, 508
BalI TGGCCA 1 cut(s) 259
BanII GRGCYC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 299
BbvI GCAGC 4 cut(s) 178, 294, 322, 382
BccI CCATC 3 cut(s) 494, 527, 620
BceAI ACGGC 1 cut(s) 424
BfaI CTAG 5 cut(s) 218, 431, 480, 597, 636
BfmI CTRYAG 3 cut(s) 212, 308, 522
BfuAI ACCTGC 1 cut(s) 703
BisI GCNGC 4 cut(s) 167, 308, 311, 371
BlnI CCTAGG 2 cut(s) 430, 479
BlsI GCNGC 4 cut(s) 168, 309, 312, 372
BmgBI CACGTC 1 cut(s) 414
BmgT120I GGNCC 3 cut(s) 4, 5, 343
BmiI GGNNCC 2 cut(s) 6, 7
BmsI GCATC 1 cut(s) 712
BoxI GACNNNNGTC 1 cut(s) 524
BpuEI CTTGAG 2 cut(s) 313, 672
BsaJI CCNNGG 3 cut(s) 254, 430, 479
Bsc4I CCNNNNNNNGG 1 cut(s) 255
Bse1I ACTGG 2 cut(s) 338, 605
Bse21I CCTNAGG 1 cut(s) 339
Bse3DI GCAATG 1 cut(s) 553
BseDI CCNNGG 3 cut(s) 254, 430, 479
BseGI GGATG 1 cut(s) 592
BseLI CCNNNNNNNGG 1 cut(s) 255
BseMI GCAATG 1 cut(s) 553
BseMII CTCAG 2 cut(s) 69, 328
BseNI ACTGG 2 cut(s) 338, 605
BseSI GKGCMC 2 cut(s) 8, 508
BseXI GCAGC 4 cut(s) 178, 294, 322, 382
BseYI CCCAGC 2 cut(s) 373, 612
BsgI GTGCAG 1 cut(s) 684
BshFI GGCC 6 cut(s) 6, 259, 337, 345, 484, 604
BsiHKAI GWGCWC 1 cut(s) 299
BslFI GGGAC 1 cut(s) 532
BslI CCNNNNNNNGG 1 cut(s) 255
BsmFI GGGAC 1 cut(s) 532
BsmI GAATGC 1 cut(s) 474
BsnI GGCC 6 cut(s) 6, 259, 337, 345, 484, 604
Bsp120I GGGCCC 1 cut(s) 4
Bsp1286I GDGCHC 3 cut(s) 8, 299, 508
Bsp19I CCATGG 1 cut(s) 254
BspACI CCGC 2 cut(s) 52, 563
BspANI GGCC 6 cut(s) 6, 259, 337, 345, 484, 604
BspCNI CTCAG 2 cut(s) 68, 327
BspLI GGNNCC 2 cut(s) 6, 7
BspMAI CTGCAG 1 cut(s) 312
BspMI ACCTGC 1 cut(s) 703
BsrBI CCGCTC 1 cut(s) 54
BsrDI GCAATG 1 cut(s) 553
BsrI ACTGG 2 cut(s) 338, 605
BssECI CCNNGG 3 cut(s) 254, 430, 479
BssT1I CCWWGG 3 cut(s) 254, 430, 479
Bst4CI ACNGT 1 cut(s) 523
BstDEI CTNAG 3 cut(s) 55, 314, 339
BstDSI CCRYGG 1 cut(s) 254
BstF5I GGATG 1 cut(s) 592
BstNSI RCATGY 1 cut(s) 450
BstPAI GACNNNNGTC 1 cut(s) 524
BstSFI CTRYAG 3 cut(s) 212, 308, 522
BstSLI GKGCMC 2 cut(s) 8, 508
BstV1I GCAGC 4 cut(s) 178, 294, 322, 382
BstXI CCANNNNNNTGG 1 cut(s) 612
Bsu36I CCTNAGG 1 cut(s) 339
BsuRI GGCC 6 cut(s) 6, 259, 337, 345, 484, 604
BtgI CCRYGG 1 cut(s) 254
BtrI CACGTC 1 cut(s) 414
BtsCI GGATG 1 cut(s) 592
BtsIMutI CAGTG 2 cut(s) 322, 687
BveI ACCTGC 1 cut(s) 703
Cfr13I GGNCC 3 cut(s) 4, 5, 343
Csp6I GTAC 1 cut(s) 388
CviAII CATG 3 cut(s) 255, 272, 447
CviQI GTAC 1 cut(s) 388
DdeI CTNAG 3 cut(s) 55, 314, 339
EaeI YGGCCR 1 cut(s) 257
EciI GGCGGA 1 cut(s) 578
Eco130I CCWWGG 3 cut(s) 254, 430, 479
Eco147I AGGCCT 1 cut(s) 484
Eco24I GRGCYC 1 cut(s) 8
Eco81I CCTNAGG 1 cut(s) 339
EcoO109I RGGNCCY 1 cut(s) 5
EcoT14I CCWWGG 3 cut(s) 254, 430, 479
EcoT22I ATGCAT 1 cut(s) 727
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 3 cut(s) 254, 430, 479
FaeI CATG 3 cut(s) 258, 275, 450
FaqI GGGAC 1 cut(s) 532
FatI CATG 3 cut(s) 254, 271, 446
Fnu4HI GCNGC 4 cut(s) 167, 308, 311, 371
FokI GGATG 1 cut(s) 599
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 4 cut(s) 167, 308, 311, 371
FspBI CTAG 5 cut(s) 218, 431, 480, 597, 636
GluI GCNGC 4 cut(s) 167, 308, 311, 371
GsaI CCCAGC 2 cut(s) 377, 616
HaeIII GGCC 6 cut(s) 6, 259, 337, 345, 484, 604
Hin1II CATG 3 cut(s) 258, 275, 450
HincII GTYRAC 1 cut(s) 355
HindII GTYRAC 1 cut(s) 355
HinfI GANTC 2 cut(s) 677, 685
HphI GGTGA 2 cut(s) 389, 655
Hpy166II GTNNAC 2 cut(s) 355, 592
Hpy188I TCNGA 2 cut(s) 207, 366
Hpy188III TCNNGA 1 cut(s) 497
Hpy8I GTNNAC 2 cut(s) 355, 592
Hpy99I CGWCG 2 cut(s) 395, 418
HpyAV CCTTC 2 cut(s) 19, 553
HpyCH4III ACNGT 1 cut(s) 523
HpyCH4IV ACGT 2 cut(s) 393, 413
HpyCH4V TGCA 6 cut(s) 275, 310, 546, 665, 698, 725
HpyF3I CTNAG 3 cut(s) 55, 314, 339
HpySE526I ACGT 2 cut(s) 393, 413
Hsp92II CATG 3 cut(s) 258, 275, 450
LmnI GCTCC 1 cut(s) 443
Lsp1109I GCAGC 4 cut(s) 178, 294, 322, 382
LweI GCATC 1 cut(s) 712
MaeI CTAG 5 cut(s) 218, 431, 480, 597, 636
MaeII ACGT 2 cut(s) 393, 413
MaeIII GTNAC 4 cut(s) 220, 317, 526, 682
MbiI CCGCTC 1 cut(s) 54
MboII GAAGA 2 cut(s) 153, 485
MhlI GDGCHC 3 cut(s) 8, 299, 508
MlsI TGGCCA 1 cut(s) 259
MluCI AATT 1 cut(s) 266
MluNI TGGCCA 1 cut(s) 259
MlyI GAGTC 1 cut(s) 679
MnlI CCTC 7 cut(s) 211, 332, 373, 445, 577, 594, 649
Mox20I TGGCCA 1 cut(s) 259
Mph1103I ATGCAT 1 cut(s) 727
MscI TGGCCA 1 cut(s) 259
MseI TTAA 2 cut(s) 194, 236
Msp20I TGGCCA 1 cut(s) 259
MspA1I CMGCKG 1 cut(s) 373
Mva1269I GAATGC 1 cut(s) 474
NcoI CCATGG 1 cut(s) 254
NlaIII CATG 3 cut(s) 258, 275, 450
NlaIV GGNNCC 2 cut(s) 6, 7
NmuCI GTSAC 4 cut(s) 220, 317, 526, 682
NsiI ATGCAT 1 cut(s) 727
NspI RCATGY 1 cut(s) 450
PaqCI CACCTGC 1 cut(s) 703
PceI AGGCCT 1 cut(s) 484
PctI GAATGC 1 cut(s) 474
PfeI GAWTC 1 cut(s) 677
PflMI CCANNNNNTGG 1 cut(s) 255
PkrI GCNGC 4 cut(s) 168, 309, 312, 372
PleI GAGTC 1 cut(s) 679
PpsI GAGTC 1 cut(s) 679
PshAI GACNNNNGTC 1 cut(s) 524
PsiI TTATAA 1 cut(s) 90
PspFI CCCAGC 2 cut(s) 373, 612
PspN4I GGNNCC 2 cut(s) 6, 7
PspOMI GGGCCC 1 cut(s) 4
PspPI GGNCC 3 cut(s) 4, 5, 343
PstI CTGCAG 1 cut(s) 312
PvuII CAGCTG 1 cut(s) 373
RsaI GTAC 1 cut(s) 389
RsaNI GTAC 1 cut(s) 388
SaqAI TTAA 2 cut(s) 194, 236
SatI GCNGC 4 cut(s) 167, 308, 311, 371
Sau96I GGNCC 3 cut(s) 4, 5, 343
SchI GAGTC 1 cut(s) 679
SduI GDGCHC 3 cut(s) 8, 299, 508
SfaNI GCATC 1 cut(s) 712
SfcI CTRYAG 3 cut(s) 212, 308, 522
SmlI CTYRAG 2 cut(s) 292, 687
SmoI CTYRAG 2 cut(s) 292, 687
Sse9I AATT 1 cut(s) 266
SseBI AGGCCT 1 cut(s) 484
SsiI CCGC 2 cut(s) 52, 563
SspMI CTAG 5 cut(s) 218, 431, 480, 597, 636
StuI AGGCCT 1 cut(s) 484
StyI CCWWGG 3 cut(s) 254, 430, 479
TaaI ACNGT 1 cut(s) 523
TaiI ACGT 2 cut(s) 396, 416
TasI AATT 1 cut(s) 266
TfiI GAWTC 1 cut(s) 677
Tru1I TTAA 2 cut(s) 194, 236
Tru9I TTAA 2 cut(s) 194, 236
TscAI CASTG 2 cut(s) 322, 687
TseFI GTSAC 4 cut(s) 220, 317, 526, 682
TseI GCWGC 4 cut(s) 166, 307, 310, 370
Tsp45I GTSAC 4 cut(s) 220, 317, 526, 682
TspDTI ATGAA 2 cut(s) 176, 302
TspRI CASTG 2 cut(s) 322, 687
Van91I CCANNNNNTGG 1 cut(s) 255
XceI RCATGY 1 cut(s) 450
XmaJI CCTAGG 2 cut(s) 430, 479
XspI CTAG 5 cut(s) 218, 431, 480, 597, 636
Zsp2I ATGCAT 1 cut(s) 727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.