Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8223106.1

Orthogroup ID

OG0015595

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 535

Gene Structure 535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8223106.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 469 bp

atgaagcaactcagtcgacttatgcaactatgcttagcaacctcaacctggctaatcctagtgacttgctcaaacctaaccccaacaccttcaccatggccagagcaattccacgcgcttctgtacatgaacatcacttcctcagcccatctccagctcagtgatgtatggtacgactggcctaaaggccgaaacgtcaacatatttcagaagcagctaggtgagctgttgtatgatgtagagtggaacaacggcacgtcgtactactacaccttgggtgagggaggacattgccaggttatggcgtttgaagtgggtattcctcggcctgattttcttgatggagcaaactaccttgggactgaggtcactgatgggtttctctgcaatgtgtgggagaaggtggatttcatttggtactatgaggatgttcagactaagaggccagttcgttgggatttctatgacg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

18.27

Weight (kDa)

4.7

Isoelectric Point (pI)

43.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015595)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g08920 FvH4_4g08920 FvH4_4g08920
malus_domestica	MD13G1264800.v1.1
prunus_persica	Prupe.1G092000_v2.0.a1
pyrus_communis	pycom13g23700
rosa_chinensis	RchiOBHm_Chr4g0403651
rosa_laevigata	RLG00000008962
rosa_multiflora	Rmu_co8223106.1_g000001
rosa_roxburghii	Rroxscaffold_5G00348250
rosa_rugosa	Rorug04G0044800
rosa_samantha	Rh4AG119800 Rh4BG113100 Rh4CG128000 Rh4DG112500
rosa_wichuraiana	Rw4G009730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	301
AccI	GTMKAC	1 cut(s)	16
AccII	CGCG	1 cut(s)	116
AcoI	YGGCCR	1 cut(s)	98
AfaI	GTAC	4 cut(s)	125, 173, 263, 419
AfiI	CCNNNNNNNGG	2 cut(s)	48, 301
AgsI	TTSAA	1 cut(s)	311
AjiI	CACGTC	1 cut(s)	258
AjnI	CCWGG	2 cut(s)	47, 294
AloI	GAACNNNNNNTCC	2 cut(s)	122, 154
AluBI	AGCT	3 cut(s)	157, 217, 226
AluI	AGCT	3 cut(s)	157, 217, 226
AoxI	GGCC	5 cut(s)	98, 179, 187, 326, 443
ApeKI	GCWGC	1 cut(s)	214
AspLEI	GCGC	1 cut(s)	118
AsuHPI	GGTGA	3 cut(s)	84, 233, 290
BalI	TGGCCA	1 cut(s)	100
BbvCI	CCTCAGC	1 cut(s)	142
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	3 cut(s)	156, 335, 368
BceAI	ACGGC	1 cut(s)	268
BcgI	CGANNNNNNTGC	1 cut(s)	30
BciT130I	CCWGG	2 cut(s)	49, 296
BfaI	CTAG	2 cut(s)	59, 218
BisI	GCNGC	1 cut(s)	215
BlpI	GCTNAGC	1 cut(s)	34
BlsI	GCNGC	1 cut(s)	216
Bme1390I	CCNGG	2 cut(s)	49, 296
BmgBI	CACGTC	1 cut(s)	258
BmrFI	CCNGG	2 cut(s)	49, 296
BoxI	GACNNNNGTC	1 cut(s)	365
BpmI	CTGGAG	1 cut(s)	137
Bpu10I	CCTNAGC	1 cut(s)	142
Bpu1102I	GCTNAGC	1 cut(s)	34
BsaJI	CCNNGG	4 cut(s)	95, 273, 323, 355
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 301
Bse1I	ACTGG	2 cut(s)	182, 446
Bse3DI	GCAATG	2 cut(s)	289, 394
BseBI	CCWGG	2 cut(s)	49, 296
BseDI	CCNNGG	4 cut(s)	95, 273, 323, 355
BseGI	GGATG	1 cut(s)	433
BseLI	CCNNNNNNNGG	2 cut(s)	48, 301
BseMI	GCAATG	2 cut(s)	289, 394
BseMII	CTCAG	4 cut(s)	25, 156, 172, 354
BseNI	ACTGG	2 cut(s)	182, 446
BseXI	GCAGC	1 cut(s)	226
Bsh1236I	CGCG	1 cut(s)	116
BshFI	GGCC	5 cut(s)	100, 181, 189, 328, 445
BslFI	GGGAC	1 cut(s)	373
BslI	CCNNNNNNNGG	2 cut(s)	48, 301
BsmFI	GGGAC	1 cut(s)	373
BsnI	GGCC	5 cut(s)	100, 181, 189, 328, 445
Bsp1407I	TGTACA	1 cut(s)	123
Bsp1720I	GCTNAGC	1 cut(s)	34
Bsp19I	CCATGG	1 cut(s)	95
BspANI	GGCC	5 cut(s)	100, 181, 189, 328, 445
BspCNI	CTCAG	4 cut(s)	24, 155, 171, 355
BspFNI	CGCG	1 cut(s)	116
BsrDI	GCAATG	2 cut(s)	289, 394
BsrGI	TGTACA	1 cut(s)	123
BsrI	ACTGG	2 cut(s)	182, 446
BssECI	CCNNGG	4 cut(s)	95, 273, 323, 355
BssT1I	CCWWGG	3 cut(s)	95, 273, 355
Bst2UI	CCWGG	2 cut(s)	49, 296
BstAUI	TGTACA	1 cut(s)	123
BstDEI	CTNAG	6 cut(s)	11, 34, 142, 158, 363, 438
BstDSI	CCRYGG	1 cut(s)	95
BstF5I	GGATG	1 cut(s)	433
BstFNI	CGCG	1 cut(s)	116
BstHHI	GCGC	1 cut(s)	118
BstMWI	GCNNNNNNNGC	1 cut(s)	223
BstNI	CCWGG	2 cut(s)	49, 296
BstPAI	GACNNNNGTC	1 cut(s)	365
BstSCI	CCNGG	2 cut(s)	47, 294
BstUI	CGCG	1 cut(s)	116
BstV1I	GCAGC	1 cut(s)	226
BstXI	CCANNNNNNTGG	1 cut(s)	453
BsuRI	GGCC	5 cut(s)	100, 181, 189, 328, 445
BtgI	CCRYGG	1 cut(s)	95
BtrI	CACGTC	1 cut(s)	258
BtsCI	GGATG	1 cut(s)	433
BtsIMutI	CAGTG	2 cut(s)	166, 369
CfoI	GCGC	1 cut(s)	118
Csp6I	GTAC	4 cut(s)	124, 172, 262, 418
CviAII	CATG	2 cut(s)	96, 127
CviQI	GTAC	4 cut(s)	124, 172, 262, 418
DdeI	CTNAG	6 cut(s)	11, 34, 142, 158, 363, 438
EaeI	YGGCCR	1 cut(s)	98
Eco130I	CCWWGG	3 cut(s)	95, 273, 355
EcoRII	CCWGG	2 cut(s)	47, 294
EcoT14I	CCWWGG	3 cut(s)	95, 273, 355
ErhI	CCWWGG	3 cut(s)	95, 273, 355
FaeI	CATG	2 cut(s)	99, 130
FaqI	GGGAC	1 cut(s)	373
FatI	CATG	2 cut(s)	95, 126
FblI	GTMKAC	1 cut(s)	16
Fnu4HI	GCNGC	1 cut(s)	215
FokI	GGATG	1 cut(s)	440
Fsp4HI	GCNGC	1 cut(s)	215
FspBI	CTAG	2 cut(s)	59, 218
GlaI	GCGC	1 cut(s)	117
GluI	GCNGC	1 cut(s)	215
GsuI	CTGGAG	1 cut(s)	137
HaeIII	GGCC	5 cut(s)	100, 181, 189, 328, 445
HhaI	GCGC	1 cut(s)	118
Hin1II	CATG	2 cut(s)	99, 130
Hin6I	GCGC	1 cut(s)	116
HinP1I	GCGC	1 cut(s)	116
HincII	GTYRAC	2 cut(s)	17, 199
HindII	GTYRAC	2 cut(s)	17, 199
HphI	GGTGA	3 cut(s)	84, 233, 290
Hpy166II	GTNNAC	2 cut(s)	17, 199
Hpy188I	TCNGA	2 cut(s)	210, 435
Hpy188III	TCNNGA	1 cut(s)	338
Hpy8I	GTNNAC	2 cut(s)	17, 199
Hpy99I	CGWCG	1 cut(s)	262
HpyAV	CCTTC	2 cut(s)	99, 394
HpyCH4IV	ACGT	2 cut(s)	195, 257
HpyCH4V	TGCA	2 cut(s)	25, 387
HpyF10VI	GCNNNNNNNGC	1 cut(s)	223
HpyF3I	CTNAG	6 cut(s)	11, 34, 142, 158, 363, 438
HpySE526I	ACGT	2 cut(s)	195, 257
Hsp92II	CATG	2 cut(s)	99, 130
HspAI	GCGC	1 cut(s)	116
LmnI	GCTCC	1 cut(s)	344
LpnPI	CCDG	9 cut(s)	34, 61, 114, 163, 167, 281, 308, 342, 459
Lsp1109I	GCAGC	1 cut(s)	226
MaeI	CTAG	2 cut(s)	59, 218
MaeII	ACGT	2 cut(s)	195, 257
MaeIII	GTNAC	2 cut(s)	61, 367
MlsI	TGGCCA	1 cut(s)	100
MluCI	AATT	1 cut(s)	107
MluNI	TGGCCA	1 cut(s)	100
MnlI	CCTC	8 cut(s)	52, 151, 274, 278, 333, 358, 418, 435
Mox20I	TGGCCA	1 cut(s)	100
MscI	TGGCCA	1 cut(s)	100
Msp20I	TGGCCA	1 cut(s)	100
MspR9I	CCNGG	2 cut(s)	49, 296
MvaI	CCWGG	2 cut(s)	49, 296
MvnI	CGCG	1 cut(s)	116
MwoI	GCNNNNNNNGC	1 cut(s)	223
NcoI	CCATGG	1 cut(s)	95
NlaIII	CATG	2 cut(s)	99, 130
NmeAIII	GCCGAG	1 cut(s)	304
NmuCI	GTSAC	2 cut(s)	61, 367
PflMI	CCANNNNNTGG	1 cut(s)	301
PkrI	GCNGC	1 cut(s)	216
PshAI	GACNNNNGTC	1 cut(s)	365
Psp6I	CCWGG	2 cut(s)	47, 294
PspGI	CCWGG	2 cut(s)	47, 294
RsaI	GTAC	4 cut(s)	125, 173, 263, 419
RsaNI	GTAC	4 cut(s)	124, 172, 262, 418
SalI	GTCGAC	1 cut(s)	15
SatI	GCNGC	1 cut(s)	215
ScrFI	CCNGG	2 cut(s)	49, 296
Sse9I	AATT	1 cut(s)	107
SspMI	CTAG	2 cut(s)	59, 218
StyD4I	CCNGG	2 cut(s)	47, 294
StyI	CCWWGG	3 cut(s)	95, 273, 355
TaiI	ACGT	2 cut(s)	198, 260
TaqI	TCGA	1 cut(s)	16
TasI	AATT	1 cut(s)	107
TatI	WGTACW	1 cut(s)	123
TscAI	CASTG	2 cut(s)	166, 376
TseFI	GTSAC	2 cut(s)	61, 367
TseI	GCWGC	1 cut(s)	214
Tsp45I	GTSAC	2 cut(s)	61, 367
TspDTI	ATGAA	3 cut(s)	17, 143, 400
TspRI	CASTG	2 cut(s)	166, 376
Van91I	CCANNNNNTGG	1 cut(s)	301
XmiI	GTMKAC	1 cut(s)	16
XspI	CTAG	2 cut(s)	59, 218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.