Rh4BG113100

At4g14100-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0015595
Physical Location & Seq
Forward (+)
19170336 .. 19171286
951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG113100.1

Sequence Viewer

Length: 576 bp
ATGAAGCAACTCAGTCGACTTGTGCAACTATGCTTAGCAACCTCAACCTGGCTAATCGTAGTGAGTTGCTCAAACCTAACCCCAACACCTTCACCATGGCCAGAGCAATTCCACGCGCTTCTGTACATGAACACTTCCTCAGCCCATCTCCAGCTCAGTGATGTATGGTATGACTGGCCTAAAGGCCGAAACGTCAACATATTTCAGAAGCAGCTAGGTGAGCTTTTGTATGATGTAGAGTGGAACAACGGCACGTCGTACTACTACACCTTGGGTGAGGGAGGACATTGCCAGGTTATGGCGTTTGAAGTGGGTATTCCTCGGCCTGATTTTCTTGATGGAGCAAACTACCTTGGGACTGAGGTCACTGATGGGTTTCTCTGCAATGTGTGGGAGAAGGTGGATTTCATTTGGTACTATGAGGATGTTCAGACTAAGAGGCCAGTTCGTTGGGATTTCTATGATGGAATAACTAGTCACGTCATGACATTTGAGGTTGGTGCAGTCTTGCCGGATTCAGTTACTCAAGCACCTGCGTACTGTTTCAATCAAAACAGAAATGCTGCTGCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

21.83

Weight (kDa)

4.71

Isoelectric Point (pI)

38.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015595)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g08920 FvH4_4g08920 FvH4_4g08920
malus_domestica MD13G1264800.v1.1
prunus_persica Prupe.1G092000_v2.0.a1
pyrus_communis pycom13g23700
rosa_chinensis RchiOBHm_Chr4g0403651
rosa_laevigata RLG00000008962
rosa_multiflora Rmu_co8223106.1_g000001
rosa_roxburghii Rroxscaffold_5G00348250
rosa_rugosa Rorug04G0044800
rosa_samantha Rh4AG119800 Rh4BG113100 Rh4CG128000 Rh4DG112500
rosa_wichuraiana Rw4G009730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 541
Acc36I ACCTGC 1 cut(s) 541
AccB7I CCANNNNNTGG 1 cut(s) 298
AccI GTMKAC 1 cut(s) 16
AccII CGCG 1 cut(s) 116
AcoI YGGCCR 1 cut(s) 98
AfaI GTAC 4 cut(s) 125, 260, 416, 539
AfiI CCNNNNNNNGG 2 cut(s) 48, 298
AgsI TTSAA 2 cut(s) 308, 547
AhlI ACTAGT 1 cut(s) 473
AjiI CACGTC 2 cut(s) 255, 481
AjnI CCWGG 2 cut(s) 47, 291
AluBI AGCT 3 cut(s) 154, 214, 223
AluI AGCT 3 cut(s) 154, 214, 223
AoxI GGCC 5 cut(s) 98, 176, 184, 323, 440
ApeKI GCWGC 4 cut(s) 211, 563, 566, 569
AspLEI GCGC 1 cut(s) 118
AsuHPI GGTGA 3 cut(s) 84, 230, 287
BalI TGGCCA 1 cut(s) 100
BbvCI CCTCAGC 1 cut(s) 139
BbvI GCAGC 4 cut(s) 223, 550, 553, 556
BccI CCATC 4 cut(s) 153, 332, 365, 458
BceAI ACGGC 1 cut(s) 265
BcgI CGANNNNNNTGC 1 cut(s) 30
BciT130I CCWGG 2 cut(s) 49, 293
BcuI ACTAGT 1 cut(s) 473
BfaI CTAG 2 cut(s) 215, 474
BfuAI ACCTGC 1 cut(s) 541
BisI GCNGC 4 cut(s) 212, 564, 567, 570
BlpI GCTNAGC 1 cut(s) 34
BlsI GCNGC 4 cut(s) 213, 565, 568, 571
Bme1390I CCNGG 2 cut(s) 49, 293
BmgBI CACGTC 2 cut(s) 255, 481
BmrFI CCNGG 2 cut(s) 49, 293
BoxI GACNNNNGTC 1 cut(s) 362
BpmI CTGGAG 1 cut(s) 134
Bpu10I CCTNAGC 1 cut(s) 139
Bpu1102I GCTNAGC 1 cut(s) 34
BpuEI CTTGAG 1 cut(s) 510
BsaJI CCNNGG 4 cut(s) 95, 270, 320, 352
Bsc4I CCNNNNNNNGG 2 cut(s) 48, 298
Bse1I ACTGG 2 cut(s) 179, 443
Bse3DI GCAATG 2 cut(s) 286, 391
BseBI CCWGG 2 cut(s) 49, 293
BseDI CCNNGG 4 cut(s) 95, 270, 320, 352
BseGI GGATG 1 cut(s) 430
BseLI CCNNNNNNNGG 2 cut(s) 48, 298
BseMI GCAATG 2 cut(s) 286, 391
BseMII CTCAG 4 cut(s) 25, 153, 169, 351
BseNI ACTGG 2 cut(s) 179, 443
BseXI GCAGC 4 cut(s) 223, 550, 553, 556
BsgI GTGCAG 1 cut(s) 522
Bsh1236I CGCG 1 cut(s) 116
BshFI GGCC 5 cut(s) 100, 178, 186, 325, 442
BsiSI CCGG 1 cut(s) 512
BslFI GGGAC 1 cut(s) 370
BslI CCNNNNNNNGG 2 cut(s) 48, 298
BsmFI GGGAC 1 cut(s) 370
BsnI GGCC 5 cut(s) 100, 178, 186, 325, 442
Bsp1407I TGTACA 1 cut(s) 123
Bsp1720I GCTNAGC 1 cut(s) 34
Bsp19I CCATGG 1 cut(s) 95
BspANI GGCC 5 cut(s) 100, 178, 186, 325, 442
BspCNI CTCAG 4 cut(s) 24, 152, 168, 352
BspFNI CGCG 1 cut(s) 116
BspHI TCATGA 1 cut(s) 483
BspMI ACCTGC 1 cut(s) 541
BsrDI GCAATG 2 cut(s) 286, 391
BsrGI TGTACA 1 cut(s) 123
BsrI ACTGG 2 cut(s) 179, 443
BssECI CCNNGG 4 cut(s) 95, 270, 320, 352
BssT1I CCWWGG 3 cut(s) 95, 270, 352
Bst2UI CCWGG 2 cut(s) 49, 293
Bst4CI ACNGT 1 cut(s) 542
BstAUI TGTACA 1 cut(s) 123
BstDEI CTNAG 6 cut(s) 11, 34, 139, 155, 360, 435
BstDSI CCRYGG 1 cut(s) 95
BstF5I GGATG 1 cut(s) 430
BstFNI CGCG 1 cut(s) 116
BstHHI GCGC 1 cut(s) 118
BstMWI GCNNNNNNNGC 2 cut(s) 220, 569
BstNI CCWGG 2 cut(s) 49, 293
BstPAI GACNNNNGTC 1 cut(s) 362
BstSCI CCNGG 2 cut(s) 47, 291
BstUI CGCG 1 cut(s) 116
BstV1I GCAGC 4 cut(s) 223, 550, 553, 556
BstXI CCANNNNNNTGG 1 cut(s) 450
BsuRI GGCC 5 cut(s) 100, 178, 186, 325, 442
BtgI CCRYGG 1 cut(s) 95
BtrI CACGTC 2 cut(s) 255, 481
BtsCI GGATG 1 cut(s) 430
BtsIMutI CAGTG 2 cut(s) 163, 366
BveI ACCTGC 1 cut(s) 541
CciI TCATGA 1 cut(s) 483
CfoI GCGC 1 cut(s) 118
Csp6I GTAC 4 cut(s) 124, 259, 415, 538
CviAII CATG 3 cut(s) 96, 127, 484
CviQI GTAC 4 cut(s) 124, 259, 415, 538
DdeI CTNAG 6 cut(s) 11, 34, 139, 155, 360, 435
EaeI YGGCCR 1 cut(s) 98
Eco130I CCWWGG 3 cut(s) 95, 270, 352
EcoRII CCWGG 2 cut(s) 47, 291
EcoT14I CCWWGG 3 cut(s) 95, 270, 352
ErhI CCWWGG 3 cut(s) 95, 270, 352
FaeI CATG 3 cut(s) 99, 130, 487
FaqI GGGAC 1 cut(s) 370
FatI CATG 3 cut(s) 95, 126, 483
FblI GTMKAC 1 cut(s) 16
Fnu4HI GCNGC 4 cut(s) 212, 564, 567, 570
FokI GGATG 1 cut(s) 437
Fsp4HI GCNGC 4 cut(s) 212, 564, 567, 570
FspBI CTAG 2 cut(s) 215, 474
GlaI GCGC 1 cut(s) 117
GluI GCNGC 4 cut(s) 212, 564, 567, 570
GsuI CTGGAG 1 cut(s) 134
HaeIII GGCC 5 cut(s) 100, 178, 186, 325, 442
HapII CCGG 1 cut(s) 512
HhaI GCGC 1 cut(s) 118
Hin1II CATG 3 cut(s) 99, 130, 487
Hin6I GCGC 1 cut(s) 116
HinP1I GCGC 1 cut(s) 116
HincII GTYRAC 2 cut(s) 17, 196
HindII GTYRAC 2 cut(s) 17, 196
HinfI GANTC 1 cut(s) 515
HpaII CCGG 1 cut(s) 512
HphI GGTGA 3 cut(s) 84, 230, 287
Hpy166II GTNNAC 2 cut(s) 17, 196
Hpy188I TCNGA 2 cut(s) 207, 432
Hpy188III TCNNGA 2 cut(s) 335, 484
Hpy8I GTNNAC 2 cut(s) 17, 196
Hpy99I CGWCG 1 cut(s) 259
HpyAV CCTTC 2 cut(s) 99, 391
HpyCH4III ACNGT 1 cut(s) 542
HpyCH4IV ACGT 3 cut(s) 192, 254, 480
HpyCH4V TGCA 4 cut(s) 25, 384, 503, 572
HpyF10VI GCNNNNNNNGC 2 cut(s) 220, 569
HpyF3I CTNAG 6 cut(s) 11, 34, 139, 155, 360, 435
HpySE526I ACGT 3 cut(s) 192, 254, 480
Hsp92II CATG 3 cut(s) 99, 130, 487
HspAI GCGC 1 cut(s) 116
LmnI GCTCC 1 cut(s) 341
Lsp1109I GCAGC 4 cut(s) 223, 550, 553, 556
MaeI CTAG 2 cut(s) 215, 474
MaeII ACGT 3 cut(s) 192, 254, 480
MaeIII GTNAC 3 cut(s) 364, 476, 520
MlsI TGGCCA 1 cut(s) 100
MluCI AATT 1 cut(s) 107
MluNI TGGCCA 1 cut(s) 100
MnlI CCTC 9 cut(s) 52, 148, 271, 275, 330, 355, 415, 432, 487
Mox20I TGGCCA 1 cut(s) 100
MscI TGGCCA 1 cut(s) 100
Msp20I TGGCCA 1 cut(s) 100
MspI CCGG 1 cut(s) 512
MspR9I CCNGG 2 cut(s) 49, 293
MvaI CCWGG 2 cut(s) 49, 293
MvnI CGCG 1 cut(s) 116
MwoI GCNNNNNNNGC 2 cut(s) 220, 569
NcoI CCATGG 1 cut(s) 95
NlaIII CATG 3 cut(s) 99, 130, 487
NmeAIII GCCGAG 1 cut(s) 301
NmuCI GTSAC 2 cut(s) 364, 476
PagI TCATGA 1 cut(s) 483
PaqCI CACCTGC 1 cut(s) 541
PfeI GAWTC 1 cut(s) 515
PflMI CCANNNNNTGG 1 cut(s) 298
PkrI GCNGC 4 cut(s) 213, 565, 568, 571
PshAI GACNNNNGTC 1 cut(s) 362
Psp6I CCWGG 2 cut(s) 47, 291
PspGI CCWGG 2 cut(s) 47, 291
RsaI GTAC 4 cut(s) 125, 260, 416, 539
RsaNI GTAC 4 cut(s) 124, 259, 415, 538
SalI GTCGAC 1 cut(s) 15
SatI GCNGC 4 cut(s) 212, 564, 567, 570
ScrFI CCNGG 2 cut(s) 49, 293
SmlI CTYRAG 1 cut(s) 525
SmoI CTYRAG 1 cut(s) 525
SpeI ACTAGT 1 cut(s) 473
Sse9I AATT 1 cut(s) 107
SspMI CTAG 2 cut(s) 215, 474
StyD4I CCNGG 2 cut(s) 47, 291
StyI CCWWGG 3 cut(s) 95, 270, 352
TaaI ACNGT 1 cut(s) 542
TaiI ACGT 3 cut(s) 195, 257, 483
TaqI TCGA 1 cut(s) 16
TasI AATT 1 cut(s) 107
TatI WGTACW 1 cut(s) 123
TfiI GAWTC 1 cut(s) 515
TscAI CASTG 2 cut(s) 163, 373
TseFI GTSAC 2 cut(s) 364, 476
TseI GCWGC 4 cut(s) 211, 563, 566, 569
Tsp45I GTSAC 2 cut(s) 364, 476
TspDTI ATGAA 3 cut(s) 17, 143, 397
TspRI CASTG 2 cut(s) 163, 373
Van91I CCANNNNNTGG 1 cut(s) 298
XmiI GTMKAC 1 cut(s) 16
XspI CTAG 2 cut(s) 215, 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.