Rorug04G0044800

At4g14100-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0015595
Physical Location & Seq
Reverse (-)
6982459 .. 6984912
2454 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0044800.1

Sequence Viewer

Length: 906 bp
ATGGCGGATCTCTACCATAGATACGCTGCTCCGCCGGAACGAGGTAGTGTAGCAAAGTCCAATTTTCCTGGTTACTTATCATCCGAAGCACCATCGTTACTATCGAATCACACTTTTGCCCCTATTGATTTGAGAAGCTATTCTTCGGATTTTCTGCTTAGAGATTATGATGTAGATGATAGTGTGGGTAGTAGAGTTCGTTCTGATTCGGGTGTTGGGGTGACAGCAGGGTCTAGCCTATATGATCCTTTGGAAGATACTTATCGAAGCCAGAGACAGGATATTGCGATGAGGTCAATGACGCCTGGGGTTTATGGTGTAAATGCTGTGAGTGTTAGTGTTCATGGTGAAGGTGAACCTGGTCTTACTGTAACAGCAGGGGCTGGTTTTCCATCTCCTTTACAAGCTCAGACTTTACTAAACCAAAGACATGAGGTCGGAGCTGGCATTGGCTCAAGTGTTTCTACTGACTTCAGTAGAGAAAGGTCTGTGCCTTCAAGGAGTGGTGATGGTCTCTCAGTCCTAAAAGGGGAATCAAACATTTTGTTTGTGGATGGACTTCCCACTAACTATACCAGAAGAGAAGTAGGCCATCTATTTCGTCCATTCATTGGCTTTAAAGAAATCAAAGTAGTTCACAAGGATCTTAGACGCAGTGGAGATAAGGCAATGGTTTTATGCTTTGCGGAGTTTGTGGATCCAAAGTGTGCTTTGACAGCTATGGAAGTTCTACAAGGTGATTCTATTATTTCTCCAGGAGCAAAGCAAGGTTTAATCCCCCTTGCTGTACCACTTTCAAGAAATATTTCAGGTGCTGTAACTGCATTGCTCCAGTGGCCTACAGCTCTGCAAGGAACATTGATAAATCCCTCTGGTGAAATGTCCTGTGTTGATAAATCCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

301

Amino Acids

32.18

Weight (kDa)

5.88

Isoelectric Point (pI)

52.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 182 - 248 5.4e-07 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015595)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g08920 FvH4_4g08920 FvH4_4g08920
malus_domestica MD13G1264800.v1.1
prunus_persica Prupe.1G092000_v2.0.a1
pyrus_communis pycom13g23700
rosa_chinensis RchiOBHm_Chr4g0403651
rosa_laevigata RLG00000008962
rosa_multiflora Rmu_co8223106.1_g000001
rosa_roxburghii Rroxscaffold_5G00348250
rosa_rugosa Rorug04G0044800
rosa_samantha Rh4AG119800 Rh4BG113100 Rh4CG128000 Rh4DG112500
rosa_wichuraiana Rw4G009730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 229
AccB7I CCANNNNNTGG 1 cut(s) 611
AciI CCGC 3 cut(s) 5, 32, 686
AclWI GGATC 5 cut(s) 15, 239, 651, 692, 705
AcuI CTGAAG 1 cut(s) 457
AcyI GRCGYC 1 cut(s) 302
AfaI GTAC 1 cut(s) 789
AfiI CCNNNNNNNGG 4 cut(s) 41, 277, 529, 611
AgsI TTSAA 2 cut(s) 498, 798
AhdI GACNNNNNGTC 1 cut(s) 434
AjnI CCWGG 4 cut(s) 67, 304, 358, 754
AluBI AGCT 5 cut(s) 138, 407, 443, 719, 845
AluI AGCT 5 cut(s) 138, 407, 443, 719, 845
Alw26I GTCTC 2 cut(s) 268, 518
AlwI GGATC 5 cut(s) 15, 239, 651, 692, 705
AlwNI CAGNNNCTG 2 cut(s) 383, 815
AoxI GGCC 2 cut(s) 589, 836
ApeKI GCWGC 1 cut(s) 26
Asp700I GAANNNNTTC 2 cut(s) 139, 805
AsuHPI GGTGA 6 cut(s) 232, 359, 365, 518, 749, 887
BamHI GGATCC 1 cut(s) 697
BbvI GCAGC 1 cut(s) 13
BccI CCATC 5 cut(s) 100, 400, 503, 548, 600
BciT130I CCWGG 4 cut(s) 69, 306, 360, 756
BcoDI GTCTC 2 cut(s) 268, 518
BfaI CTAG 1 cut(s) 234
BfmI CTRYAG 1 cut(s) 840
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
Bme1390I CCNGG 4 cut(s) 69, 306, 360, 756
BmeRI GACNNNNNGTC 1 cut(s) 434
BmiI GGNNCC 1 cut(s) 699
BmrFI CCNGG 4 cut(s) 69, 306, 360, 756
BpmI CTGGAG 2 cut(s) 738, 815
BpuEI CTTGAG 1 cut(s) 439
BsaBI GATNNNNATC 1 cut(s) 261
BsaHI GRCGYC 1 cut(s) 302
BsaI GGTCTC 1 cut(s) 518
BsaJI CCNNGG 1 cut(s) 305
Bsc4I CCNNNNNNNGG 4 cut(s) 41, 277, 529, 611
Bse1I ACTGG 1 cut(s) 832
Bse3DI GCAATG 2 cut(s) 675, 824
Bse8I GATNNNNATC 1 cut(s) 261
BseBI CCWGG 4 cut(s) 69, 306, 360, 756
BseDI CCNNGG 1 cut(s) 305
BseGI GGATG 2 cut(s) 80, 559
BseJI GATNNNNATC 1 cut(s) 261
BseLI CCNNNNNNNGG 4 cut(s) 41, 277, 529, 611
BseMI GCAATG 2 cut(s) 675, 824
BseMII CTCAG 2 cut(s) 422, 531
BseNI ACTGG 1 cut(s) 832
BseXI GCAGC 1 cut(s) 13
BshFI GGCC 2 cut(s) 591, 838
BsiSI CCGG 1 cut(s) 35
BslI CCNNNNNNNGG 4 cut(s) 41, 277, 529, 611
BsmAI GTCTC 2 cut(s) 268, 518
BsnI GGCC 2 cut(s) 591, 838
Bso31I GGTCTC 1 cut(s) 518
Bsp143I GATC 4 cut(s) 7, 244, 643, 697
BspACI CCGC 3 cut(s) 5, 32, 686
BspANI GGCC 2 cut(s) 591, 838
BspCNI CTCAG 2 cut(s) 421, 530
BspLI GGNNCC 1 cut(s) 699
BspPI GGATC 5 cut(s) 15, 239, 651, 692, 705
BspTNI GGTCTC 1 cut(s) 518
BsrDI GCAATG 2 cut(s) 675, 824
BsrI ACTGG 1 cut(s) 832
BssECI CCNNGG 1 cut(s) 305
BssMI GATC 4 cut(s) 7, 244, 643, 697
BssNI GRCGYC 1 cut(s) 302
Bst2UI CCWGG 4 cut(s) 69, 306, 360, 756
Bst4CI ACNGT 1 cut(s) 370
Bst6I CTCTTC 1 cut(s) 574
BstACI GRCGYC 1 cut(s) 302
BstC8I GCNNGC 1 cut(s) 445
BstDEI CTNAG 4 cut(s) 158, 408, 517, 647
BstF5I GGATG 2 cut(s) 80, 559
BstKTI GATC 4 cut(s) 10, 247, 646, 700
BstMAI GTCTC 2 cut(s) 268, 518
BstMBI GATC 4 cut(s) 7, 244, 643, 697
BstMWI GCNNNNNNNGC 3 cut(s) 716, 821, 835
BstNI CCWGG 4 cut(s) 69, 306, 360, 756
BstSCI CCNGG 4 cut(s) 67, 304, 358, 754
BstSFI CTRYAG 1 cut(s) 840
BstV1I GCAGC 1 cut(s) 13
BstX2I RGATCY 3 cut(s) 7, 643, 697
BstYI RGATCY 3 cut(s) 7, 643, 697
BsuRI GGCC 2 cut(s) 591, 838
BtgZI GCGATG 1 cut(s) 302
BtsCI GGATG 2 cut(s) 80, 559
BtsI GCAGTG 1 cut(s) 661
BtsIMutI CAGTG 2 cut(s) 661, 839
Cac8I GCNNGC 1 cut(s) 445
CaiI CAGNNNCTG 2 cut(s) 383, 815
CseI GACGC 2 cut(s) 310, 660
CsiI ACCWGGT 1 cut(s) 358
Csp6I GTAC 1 cut(s) 788
CviAII CATG 2 cut(s) 344, 431
CviQI GTAC 1 cut(s) 788
DdeI CTNAG 4 cut(s) 158, 408, 517, 647
DpnI GATC 4 cut(s) 9, 246, 645, 699
DpnII GATC 4 cut(s) 7, 244, 643, 697
DraI TTTAAA 1 cut(s) 619
DrdI GACNNNNNNGTC 1 cut(s) 229
DriI GACNNNNNGTC 1 cut(s) 434
DseDI GACNNNNNNGTC 1 cut(s) 229
Eam1104I CTCTTC 1 cut(s) 574
Eam1105I GACNNNNNGTC 1 cut(s) 434
EarI CTCTTC 1 cut(s) 574
EciI GGCGGA 2 cut(s) 20, 21
Eco31I GGTCTC 1 cut(s) 518
Eco57I CTGAAG 1 cut(s) 457
EcoRII CCWGG 4 cut(s) 67, 304, 358, 754
FaeI CATG 2 cut(s) 347, 434
FalI AAGNNNNNCTT 2 cut(s) 127, 159
FatI CATG 2 cut(s) 343, 430
Fnu4HI GCNGC 1 cut(s) 27
FokI GGATG 2 cut(s) 67, 566
Fsp4HI GCNGC 1 cut(s) 27
FspBI CTAG 1 cut(s) 234
GluI GCNGC 1 cut(s) 27
GsuI CTGGAG 2 cut(s) 738, 815
HaeIII GGCC 2 cut(s) 591, 838
HapII CCGG 1 cut(s) 35
HgaI GACGC 2 cut(s) 310, 660
Hin1I GRCGYC 1 cut(s) 302
Hin1II CATG 2 cut(s) 347, 434
HinfI GANTC 4 cut(s) 106, 206, 533, 740
HpaII CCGG 1 cut(s) 35
HphI GGTGA 6 cut(s) 232, 359, 365, 518, 749, 887
Hpy166II GTNNAC 2 cut(s) 356, 637
Hpy188I TCNGA 5 cut(s) 85, 148, 205, 411, 440
Hpy188III TCNNGA 1 cut(s) 798
Hpy8I GTNNAC 2 cut(s) 356, 637
HpyAV CCTTC 2 cut(s) 344, 504
HpyCH4III ACNGT 1 cut(s) 370
HpyCH4V TGCA 2 cut(s) 824, 850
HpyF10VI GCNNNNNNNGC 3 cut(s) 716, 821, 835
HpyF3I CTNAG 4 cut(s) 158, 408, 517, 647
Hsp92I GRCGYC 1 cut(s) 302
Hsp92II CATG 2 cut(s) 347, 434
Kzo9I GATC 4 cut(s) 7, 244, 643, 697
LmnI GCTCC 4 cut(s) 34, 440, 758, 834
Lsp1109I GCAGC 1 cut(s) 13
MabI ACCWGGT 1 cut(s) 358
MaeI CTAG 1 cut(s) 234
MaeIII GTNAC 5 cut(s) 71, 96, 220, 370, 817
MalI GATC 4 cut(s) 9, 246, 645, 699
MboI GATC 4 cut(s) 7, 244, 643, 697
MboII GAAGA 3 cut(s) 135, 266, 591
MflI RGATCY 3 cut(s) 7, 643, 697
MluCI AATT 1 cut(s) 61
MmeI TCCRAC 1 cut(s) 418
MnlI CCTC 4 cut(s) 35, 285, 427, 880
MroXI GAANNNNTTC 2 cut(s) 139, 805
MseI TTAA 2 cut(s) 618, 773
MspI CCGG 1 cut(s) 35
MspR9I CCNGG 4 cut(s) 69, 306, 360, 756
MvaI CCWGG 4 cut(s) 69, 306, 360, 756
MwoI GCNNNNNNNGC 3 cut(s) 716, 821, 835
NdeII GATC 4 cut(s) 7, 244, 643, 697
NlaIII CATG 2 cut(s) 347, 434
NlaIV GGNNCC 1 cut(s) 699
NmuCI GTSAC 1 cut(s) 220
PcsI WCGNNNNNNNCGW 1 cut(s) 101
PdmI GAANNNNTTC 2 cut(s) 139, 805
PfeI GAWTC 4 cut(s) 106, 206, 533, 740
PflMI CCANNNNNTGG 1 cut(s) 611
PfoI TCCNGGA 1 cut(s) 754
PkrI GCNGC 1 cut(s) 28
Psp6I CCWGG 4 cut(s) 67, 304, 358, 754
PspGI CCWGG 4 cut(s) 67, 304, 358, 754
PspN4I GGNNCC 1 cut(s) 699
PsrI GAACNNNNNNTAC 2 cut(s) 184, 216
PstNI CAGNNNCTG 2 cut(s) 383, 815
PsuI RGATCY 3 cut(s) 7, 643, 697
RsaI GTAC 1 cut(s) 789
RsaNI GTAC 1 cut(s) 788
SaqAI TTAA 2 cut(s) 618, 773
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 4 cut(s) 7, 244, 643, 697
ScrFI CCNGG 4 cut(s) 69, 306, 360, 756
SexAI ACCWGGT 1 cut(s) 358
SfcI CTRYAG 1 cut(s) 840
SmlI CTYRAG 1 cut(s) 454
SmoI CTYRAG 1 cut(s) 454
Sse9I AATT 1 cut(s) 61
SsiI CCGC 3 cut(s) 5, 32, 686
SspI AATATT 1 cut(s) 805
SspMI CTAG 1 cut(s) 234
StyD4I CCNGG 4 cut(s) 67, 304, 358, 754
TaaI ACNGT 1 cut(s) 370
TaqI TCGA 2 cut(s) 104, 265
TasI AATT 1 cut(s) 61
TfiI GAWTC 4 cut(s) 106, 206, 533, 740
Tru1I TTAA 2 cut(s) 618, 773
Tru9I TTAA 2 cut(s) 618, 773
TscAI CASTG 2 cut(s) 661, 839
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 1 cut(s) 26
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 2 cut(s) 332, 598
TspRI CASTG 2 cut(s) 661, 839
Van91I CCANNNNNTGG 1 cut(s) 611
XmnI GAANNNNTTC 2 cut(s) 139, 805
XspI CTAG 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.