Prupe.1G099900_v2.0.a1

Clathrin assembly protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
7964740 .. 7970588
5849 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G099900.2

Sequence Viewer

Length: 1704 bp
ATGGCAGCAGGCAGTCAGCAAAGCTTAAGAAAAGCTTTGAAAACTGTTGGATTGGCAAAAGCCAATGGCGATTTCAAGGCACTGGATGTTGCCATTGCCAAGGCCACAAGTCATGATGAAGCATTGCCCAAGGAGAAACATGTTTTAACTATACTAAATGCAGTTTCGGCGTTTAGACCTCGTGCTGAAGCTGCTTACTGCATCCATGGTCTTGCAAGGCGTCTTAGTAAGACTCACAATTGGAAGGTAGCACTGAAAACCGTGATTATTGTACACCGTGCTTTGAGGGAAGTTGATGACACATTTTGTGACGCTGTAGTCAAATATAGCTGGAGTAGAGGTCATATGCTGAATTTATCTCATGTTTGGGATGGATCAAGTTCAAGTGCATTGGATTTTTCTGCTTGGGTGCGGACATATGCATCATACCTTGAAGAGCGTCTGGAGTGTTTCCGCGTATTGAAGTATGATGCCCAGAAAGATCACTCGAGAACTAAGGAACTTGATACCCCAGACTTACTAAGGCAATTACCTGCCTTGCAACAGCTTCTATCTCGCCTTCTTGATTGTCAGCCAAAGGAGGGAACTGTATGTAATTGCTTGATTCAGTTTGCCCTGTCAATGGTTGCAGGTGAAAGTGCTAAGTTGTATGCTGCAATTACTGATGGCAATGTCAATTTATTAGACAAGTTCTTTGAGATGCAGCACAATGATGCAGTCAGAGCACTCGAAATTTATAAGAAGTCGAGAAGCCAGGAAGAGAGGTTATGTGAGTTCTTTGAGATCTGCAGGAGCTTTAACTTTGGACAGGCACTGAAATTCATCAAAATTCAACAGCCCCCTGCATCATTCTTGACTACCATGGAAGATTATGTGAACGACGCTCCCAGCAGTTCAACGCTTCAACATACACAAATCAATGAGAAGGAAGATGCGGCTCCCCAGGTAATTCATCTGGTAGAAGGTGATTTGTTAATTGACCATAAACAAGATGATAATGTAGAAGAAAAATCAAATGCCAATGGGACAGCCCCTGATCAGAGTGAGGCTGCTGGCACATCACAAGTGATTGATCTTCTGAGCTTCGATGAATTACCCCCAGTAACATCAGAGTCAGATGAGCAAAATTCTCTCGCACTTGCAATTGTTCAATCTGATTCCAAACCAGATGGTCTCAATTCAACAAGCTCGGAGTCTAGTTGGGAGCTTGCACTTTTTACAGCTCCAAGTTCTAATGCAGATGCAGTTTCAGCACCAAGTTCTAATGTAGCTTCAGCTGAAGAGACTAAGGTGGCTGTTGGACTGGACAGATTGACACTGGATAGTCTATATGATGGTGCAATGGCAAGTACACCAAATCAGAATGGCTTCTACCACAGACAGGCACCCTCTAATCCTTTTGATGATGCCCCAATTAGTCCTTACCAATTAGTCCCACTTCCCCAAAACAACACGCAAATGGCTATCATGCCCCAACAACATGTACAAGACCAAGTCCCGTTTTATGGTCTCTATAGCAATGCAATTCCAACAGCCTCAACTAACTCACAAATGCCTTTCATGACCCAACAACAAGCTTTCATGATGCAGCAGCAACAGTTAGCCAACATCAGTGATATTCCATCAAATTCTTCTGGCAATCCCTTTGCTATTGAGCAGAGTTATTCGCAACCGCCACCAAACTCTTTCAATGGCTTCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

568

Amino Acids

62.53

Weight (kDa)

5.06

Isoelectric Point (pI)

50.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 738
AarI CACCTGC 1 cut(s) 620
AasI GACNNNNNNGTC 1 cut(s) 317
Acc36I ACCTGC 2 cut(s) 541, 620
AccB1I GGYRCC 1 cut(s) 1384
AccII CGCG 1 cut(s) 456
AciI CCGC 4 cut(s) 412, 454, 935, 1673
AclWI GGATC 1 cut(s) 382
AcsI RAATTY 6 cut(s) 352, 732, 818, 828, 1126, 1627
AcuI CTGAAG 3 cut(s) 207, 1257, 1299
AcyI GRCGYC 1 cut(s) 220
AfaI GTAC 3 cut(s) 273, 1351, 1485
AfiI CCNNNNNNNGG 4 cut(s) 581, 622, 1381, 1505
AflII CTTAAG 1 cut(s) 25
AflIII ACRYGT 2 cut(s) 139, 1480
AjnI CCWGG 2 cut(s) 753, 942
AjuI GAANNNNNNNTTGG 2 cut(s) 56, 88
Alw21I GWGCWC 1 cut(s) 727
Alw26I GTCTC 3 cut(s) 1178, 1277, 1514
AlwI GGATC 1 cut(s) 382
AlwNI CAGNNNCTG 2 cut(s) 814, 1034
Ama87I CYCGRG 1 cut(s) 487
AoxI GGCC 1 cut(s) 102
ApeKI GCWGC 7 cut(s) 5, 191, 653, 703, 1049, 1588, 1591
ApoI RAATTY 6 cut(s) 352, 732, 818, 828, 1126, 1627
ArsI GACNNNNNNTTYG 2 cut(s) 677, 709
Asp700I GAANNNNTTC 1 cut(s) 1367
AsuHPI GGTGA 2 cut(s) 644, 977
AvaI CYCGRG 1 cut(s) 487
BanI GGYRCC 1 cut(s) 1384
BauI CACGAG 1 cut(s) 180
Bbv12I GWGCWC 1 cut(s) 727
BbvI GCAGC 7 cut(s) 17, 178, 640, 715, 1036, 1600, 1603
BccI CCATC 5 cut(s) 365, 659, 1163, 1328, 1630
BciT130I CCWGG 2 cut(s) 755, 944
BclI TGATCA 1 cut(s) 1036
BcoDI GTCTC 3 cut(s) 1178, 1277, 1514
BfaI CTAG 1 cut(s) 1197
BfmI CTRYAG 3 cut(s) 315, 787, 1513
BfrI CTTAAG 1 cut(s) 25
BfuAI ACCTGC 2 cut(s) 541, 620
BglII AGATCT 1 cut(s) 783
BisI GCNGC 8 cut(s) 6, 192, 654, 704, 936, 1050, 1589, 1592
BlsI GCNGC 8 cut(s) 7, 193, 655, 705, 937, 1051, 1590, 1593
Bme1390I CCNGG 2 cut(s) 755, 944
BmeT110I CYCGRG 1 cut(s) 487
BmiI GGNNCC 2 cut(s) 939, 1386
BmrFI CCNGG 2 cut(s) 755, 944
BmrI ACTGGG 1 cut(s) 1094
BmuI ACTGGG 1 cut(s) 1094
BpmI CTGGAG 2 cut(s) 352, 464
BsaHI GRCGYC 1 cut(s) 220
BsaI GGTCTC 2 cut(s) 1178, 1514
BsaJI CCNNGG 5 cut(s) 99, 129, 205, 861, 942
BsaXI ACNNNNNCTCC 2 cut(s) 325, 355
Bsc4I CCNNNNNNNGG 4 cut(s) 581, 622, 1381, 1505
Bse1I ACTGG 4 cut(s) 87, 1100, 1308, 1323
Bse3DI GCAATG 5 cut(s) 93, 122, 676, 1347, 1525
BseBI CCWGG 2 cut(s) 755, 944
BseDI CCNNGG 5 cut(s) 99, 129, 205, 861, 942
BseGI GGATG 3 cut(s) 91, 201, 376
BseLI CCNNNNNNNGG 4 cut(s) 581, 622, 1381, 1505
BseMI GCAATG 5 cut(s) 93, 122, 676, 1347, 1525
BseMII CTCAG 1 cut(s) 1070
BseNI ACTGG 4 cut(s) 87, 1100, 1308, 1323
BseXI GCAGC 7 cut(s) 17, 178, 640, 715, 1036, 1600, 1603
BseYI CCCAGC 1 cut(s) 887
Bsh1236I CGCG 1 cut(s) 456
BshFI GGCC 1 cut(s) 104
BshNI GGYRCC 1 cut(s) 1384
BsiHKAI GWGCWC 1 cut(s) 727
BsiHKCI CYCGRG 1 cut(s) 487
BslFI GGGAC 3 cut(s) 1039, 1418, 1481
BslI CCNNNNNNNGG 4 cut(s) 581, 622, 1381, 1505
BsmAI GTCTC 3 cut(s) 1178, 1277, 1514
BsmFI GGGAC 3 cut(s) 1039, 1418, 1481
BsnI GGCC 1 cut(s) 104
Bso31I GGTCTC 2 cut(s) 1178, 1514
BsoBI CYCGRG 1 cut(s) 487
Bsp1286I GDGCHC 1 cut(s) 727
Bsp1407I TGTACA 2 cut(s) 271, 1483
Bsp143I GATC 5 cut(s) 374, 481, 783, 1036, 1072
Bsp19I CCATGG 2 cut(s) 205, 861
BspACI CCGC 4 cut(s) 412, 454, 935, 1673
BspANI GGCC 1 cut(s) 104
BspCNI CTCAG 1 cut(s) 1071
BspFNI CGCG 1 cut(s) 456
BspHI TCATGA 3 cut(s) 112, 1560, 1581
BspLI GGNNCC 2 cut(s) 939, 1386
BspMAI CTGCAG 1 cut(s) 791
BspMI ACCTGC 2 cut(s) 541, 620
BspPI GGATC 1 cut(s) 382
BspQI GCTCTTC 1 cut(s) 429
BspT107I GGYRCC 1 cut(s) 1384
BspTI CTTAAG 1 cut(s) 25
BspTNI GGTCTC 2 cut(s) 1178, 1514
BsrDI GCAATG 5 cut(s) 93, 122, 676, 1347, 1525
BsrGI TGTACA 2 cut(s) 271, 1483
BsrI ACTGG 4 cut(s) 87, 1100, 1308, 1323
BssECI CCNNGG 5 cut(s) 99, 129, 205, 861, 942
BssMI GATC 5 cut(s) 374, 481, 783, 1036, 1072
BssNI GRCGYC 1 cut(s) 220
BssSI CACGAG 1 cut(s) 180
BssT1I CCWWGG 4 cut(s) 99, 129, 205, 861
Bst2BI CACGAG 1 cut(s) 180
Bst2UI CCWGG 2 cut(s) 755, 944
Bst4CI ACNGT 5 cut(s) 46, 262, 278, 589, 1599
Bst6I CTCTTC 3 cut(s) 429, 753, 1275
BstACI GRCGYC 1 cut(s) 220
BstAFI CTTAAG 1 cut(s) 25
BstAUI TGTACA 2 cut(s) 271, 1483
BstC8I GCNNGC 3 cut(s) 10, 1054, 1209
BstDEI CTNAG 6 cut(s) 224, 495, 521, 642, 1079, 1287
BstDSI CCRYGG 2 cut(s) 205, 861
BstF5I GGATG 3 cut(s) 91, 201, 376
BstFNI CGCG 1 cut(s) 456
BstKTI GATC 5 cut(s) 377, 484, 786, 1039, 1075
BstMAI GTCTC 3 cut(s) 1178, 1277, 1514
BstMBI GATC 5 cut(s) 374, 481, 783, 1036, 1072
BstMWI GCNNNNNNNGC 4 cut(s) 167, 191, 722, 1250
BstNI CCWGG 2 cut(s) 755, 944
BstNSI RCATGY 2 cut(s) 143, 1484
BstSCI CCNGG 2 cut(s) 753, 942
BstSFI CTRYAG 3 cut(s) 315, 787, 1513
BstUI CGCG 1 cut(s) 456
BstV1I GCAGC 7 cut(s) 17, 178, 640, 715, 1036, 1600, 1603
BstX2I RGATCY 1 cut(s) 783
BstYI RGATCY 1 cut(s) 783
BsuRI GGCC 1 cut(s) 104
BtgI CCRYGG 2 cut(s) 205, 861
BtsCI GGATG 3 cut(s) 91, 201, 376
BtsIMutI CAGTG 5 cut(s) 80, 251, 812, 1316, 1618
BveI ACCTGC 2 cut(s) 541, 620
Cac8I GCNNGC 3 cut(s) 10, 1054, 1209
CaiI CAGNNNCTG 2 cut(s) 814, 1034
CciI TCATGA 3 cut(s) 112, 1560, 1581
CseI GACGC 4 cut(s) 209, 320, 428, 890
Csp6I GTAC 3 cut(s) 272, 1350, 1484
CviAII CATG 9 cut(s) 113, 140, 206, 362, 862, 1468, 1481, 1561, 1582
CviQI GTAC 3 cut(s) 272, 1350, 1484
DdeI CTNAG 6 cut(s) 224, 495, 521, 642, 1079, 1287
DpnI GATC 5 cut(s) 376, 483, 785, 1038, 1074
DpnII GATC 5 cut(s) 374, 481, 783, 1036, 1072
DrdI GACNNNNNNGTC 1 cut(s) 317
DseDI GACNNNNNNGTC 1 cut(s) 317
Eam1104I CTCTTC 3 cut(s) 429, 753, 1275
EarI CTCTTC 3 cut(s) 429, 753, 1275
Eco130I CCWWGG 4 cut(s) 99, 129, 205, 861
Eco31I GGTCTC 2 cut(s) 1178, 1514
Eco57I CTGAAG 3 cut(s) 207, 1257, 1299
Eco88I CYCGRG 1 cut(s) 487
EcoRII CCWGG 2 cut(s) 753, 942
EcoT14I CCWWGG 4 cut(s) 99, 129, 205, 861
EcoT22I ATGCAT 1 cut(s) 424
ErhI CCWWGG 4 cut(s) 99, 129, 205, 861
FaeI CATG 9 cut(s) 116, 143, 209, 365, 865, 1471, 1484, 1564, 1585
FalI AAGNNNNNCTT 2 cut(s) 19, 51
FaqI GGGAC 3 cut(s) 1039, 1418, 1481
FatI CATG 9 cut(s) 112, 139, 205, 361, 861, 1467, 1480, 1560, 1581
FauNDI CATATG 2 cut(s) 345, 418
FbaI TGATCA 1 cut(s) 1036
Fnu4HI GCNGC 8 cut(s) 6, 192, 654, 704, 936, 1050, 1589, 1592
FokI GGATG 3 cut(s) 98, 188, 383
Fsp4HI GCNGC 8 cut(s) 6, 192, 654, 704, 936, 1050, 1589, 1592
FspBI CTAG 1 cut(s) 1197
GluI GCNGC 8 cut(s) 6, 192, 654, 704, 936, 1050, 1589, 1592
GsaI CCCAGC 1 cut(s) 891
GsuI CTGGAG 2 cut(s) 352, 464
HaeIII GGCC 1 cut(s) 104
HgaI GACGC 4 cut(s) 209, 320, 428, 890
Hin1I GRCGYC 1 cut(s) 220
Hin1II CATG 9 cut(s) 116, 143, 209, 365, 865, 1471, 1484, 1564, 1585
HindIII AAGCTT 3 cut(s) 22, 33, 1575
HinfI GANTC 5 cut(s) 232, 604, 1112, 1157, 1193
HphI GGTGA 2 cut(s) 644, 977
Hpy166II GTNNAC 3 cut(s) 274, 877, 1352
Hpy188I TCNGA 8 cut(s) 722, 1041, 1080, 1111, 1117, 1156, 1192, 1362
Hpy188III TCNNGA 8 cut(s) 113, 443, 489, 563, 747, 853, 1561, 1582
Hpy8I GTNNAC 3 cut(s) 274, 877, 1352
Hpy99I CGWCG 1 cut(s) 884
HpyAV CCTTC 4 cut(s) 238, 569, 919, 956
HpyCH4III ACNGT 5 cut(s) 46, 262, 278, 589, 1599
HpyF10VI GCNNNNNNNGC 4 cut(s) 167, 191, 722, 1250
HpyF3I CTNAG 6 cut(s) 224, 495, 521, 642, 1079, 1287
Hsp92I GRCGYC 1 cut(s) 220
Hsp92II CATG 9 cut(s) 116, 143, 209, 365, 865, 1471, 1484, 1564, 1585
Ksp22I TGATCA 1 cut(s) 1036
Kzo9I GATC 5 cut(s) 374, 481, 783, 1036, 1072
LguI GCTCTTC 1 cut(s) 429
LmnI GCTCC 5 cut(s) 792, 889, 943, 1204, 1228
Lsp1109I GCAGC 7 cut(s) 17, 178, 640, 715, 1036, 1600, 1603
MaeI CTAG 1 cut(s) 1197
MaeIII GTNAC 2 cut(s) 308, 1102
MalI GATC 5 cut(s) 376, 483, 785, 1038, 1074
MboI GATC 5 cut(s) 374, 481, 783, 1036, 1072
MboII GAAGA 8 cut(s) 446, 770, 878, 941, 1016, 1067, 1292, 1623
MfeI CAATTG 2 cut(s) 238, 1143
MflI RGATCY 1 cut(s) 783
MhlI GDGCHC 1 cut(s) 727
MlyI GAGTC 3 cut(s) 226, 1121, 1202
MmeI TCCRAC 3 cut(s) 28, 1279, 1553
MnlI CCTC 8 cut(s) 189, 279, 332, 574, 756, 1039, 1399, 1546
Mph1103I ATGCAT 1 cut(s) 424
MroXI GAANNNNTTC 1 cut(s) 1367
MseI TTAA 4 cut(s) 26, 146, 798, 974
MslI CAYNNNNRTG 2 cut(s) 711, 1457
MspA1I CMGCKG 1 cut(s) 1277
MspCI CTTAAG 1 cut(s) 25
MspR9I CCNGG 2 cut(s) 755, 944
MunI CAATTG 2 cut(s) 238, 1143
MvaI CCWGG 2 cut(s) 755, 944
MvnI CGCG 1 cut(s) 456
MwoI GCNNNNNNNGC 4 cut(s) 167, 191, 722, 1250
NcoI CCATGG 2 cut(s) 205, 861
NdeI CATATG 2 cut(s) 345, 418
NdeII GATC 5 cut(s) 374, 481, 783, 1036, 1072
NlaIII CATG 9 cut(s) 116, 143, 209, 365, 865, 1471, 1484, 1564, 1585
NlaIV GGNNCC 2 cut(s) 939, 1386
NmuCI GTSAC 1 cut(s) 308
NsiI ATGCAT 1 cut(s) 424
NspI RCATGY 2 cut(s) 143, 1484
PaeR7I CTCGAG 1 cut(s) 487
PagI TCATGA 3 cut(s) 112, 1560, 1581
PaqCI CACCTGC 1 cut(s) 620
PciI ACATGT 2 cut(s) 139, 1480
PciSI GCTCTTC 1 cut(s) 429
PdmI GAANNNNTTC 1 cut(s) 1367
PfeI GAWTC 2 cut(s) 604, 1157
PflFI GACNNNGTC 1 cut(s) 1493
PkrI GCNGC 8 cut(s) 7, 193, 655, 705, 937, 1051, 1590, 1593
PleI GAGTC 3 cut(s) 226, 1120, 1201
PpsI GAGTC 3 cut(s) 226, 1120, 1201
PscI ACATGT 2 cut(s) 139, 1480
PsiI TTATAA 1 cut(s) 738
Psp6I CCWGG 2 cut(s) 753, 942
PspFI CCCAGC 1 cut(s) 887
PspGI CCWGG 2 cut(s) 753, 942
PspN4I GGNNCC 2 cut(s) 939, 1386
PstI CTGCAG 1 cut(s) 791
PstNI CAGNNNCTG 2 cut(s) 814, 1034
PsuI RGATCY 1 cut(s) 783
PsyI GACNNNGTC 1 cut(s) 1493
PvuII CAGCTG 1 cut(s) 1277
RsaI GTAC 3 cut(s) 273, 1351, 1485
RsaNI GTAC 3 cut(s) 272, 1350, 1484
RseI CAYNNNNRTG 2 cut(s) 711, 1457
SapI GCTCTTC 1 cut(s) 429
SaqAI TTAA 4 cut(s) 26, 146, 798, 974
SatI GCNGC 8 cut(s) 6, 192, 654, 704, 936, 1050, 1589, 1592
Sau3AI GATC 5 cut(s) 374, 481, 783, 1036, 1072
SchI GAGTC 3 cut(s) 226, 1121, 1202
ScrFI CCNGG 2 cut(s) 755, 944
SduI GDGCHC 1 cut(s) 727
SfcI CTRYAG 3 cut(s) 315, 787, 1513
Sfr274I CTCGAG 1 cut(s) 487
SlaI CTCGAG 1 cut(s) 487
SmiMI CAYNNNNRTG 2 cut(s) 711, 1457
SmlI CTYRAG 2 cut(s) 25, 487
SmoI CTYRAG 2 cut(s) 25, 487
SsiI CCGC 4 cut(s) 412, 454, 935, 1673
SspMI CTAG 1 cut(s) 1197
StyD4I CCNGG 2 cut(s) 753, 942
StyI CCWWGG 4 cut(s) 99, 129, 205, 861
TaaI ACNGT 5 cut(s) 46, 262, 278, 589, 1599
TaqI TCGA 4 cut(s) 488, 729, 746, 1086
TatI WGTACW 3 cut(s) 271, 1349, 1483
TauI GCSGC 1 cut(s) 938
TfiI GAWTC 2 cut(s) 604, 1157
Tru1I TTAA 4 cut(s) 26, 146, 798, 974
Tru9I TTAA 4 cut(s) 26, 146, 798, 974
TscAI CASTG 5 cut(s) 87, 258, 819, 1323, 1618
TseFI GTSAC 1 cut(s) 308
TseI GCWGC 7 cut(s) 5, 191, 653, 703, 1049, 1588, 1591
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 7 cut(s) 132, 811, 941, 1104, 1549, 1570, 1687
TspRI CASTG 5 cut(s) 87, 258, 819, 1323, 1618
Tth111I GACNNNGTC 1 cut(s) 1493
Vha464I CTTAAG 1 cut(s) 25
XapI RAATTY 6 cut(s) 352, 732, 818, 828, 1126, 1627
XceI RCATGY 2 cut(s) 143, 1484
XhoI CTCGAG 1 cut(s) 487
XmnI GAANNNNTTC 1 cut(s) 1367
XspI CTAG 1 cut(s) 1197
Zsp2I ATGCAT 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.