RLG00000008865

Clathrin assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0011552
Physical Location & Seq
Forward (+)
41415929 .. 41421342
5414 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008865

Sequence Viewer

Length: 1839 bp
ATGGCAGCAGGTGCAGGCAGTCAGCAAAGCTTGAGAAAAGCGTTGAAAACAGTAGGATTGGCAAAAGCCAATGGTGAATTTAAGGTATTGGATAATGCCATTTCCAAGGCCACAAGACATGATGACGCATTGCCAAAGGAGAAACATGTTACTACTATACTACGTGCAATTCCAGCTTCAAGACCTCGTGCTGAAGTTGCTTATTGCATACATGCTCTAGCCAGGCGCCTTTCTAAGGCTCACAGTTGGAAGGTAGCACTGAAAACCGTGATGATTATACACCGTGCTCTGAGGGAAGTTGATGATTCATTTTGTGAGGCTCTAATTAAGTATAGCTGGAGTAGAGGTCATATTCTGAACATATCTCATTCGTGGGATGAAACAAGTCCAAGTGCATGGGGTTATTCTACCTGGGTTCGTTTATATGCATCATATCTTGAAGAACGCCTGGAGTGTTTTCGTGTCCTGAAGTATGATGTTCAGAAAGATCACTTGAGAACCAAGGAACTTGAAACCCCAGACTTACTAAGGCATCTACCTGCCTTGCAACAACTTCTTTCTCGCCTTCTTGATTGCCAGCCAGAAGTGGGGACTATATGTAATAGCCTGATTCAGTATGCTATTTCAATGGTTGCAGGTGAAAGTGCCAAGTTGTATGCTGCAATTACAGATGGTATTGTCAATTTGGTTGACAAGTTCTTTGAGATGCAGCGTGATGATGCAGTTAAAGCACTTGAAATTTATAAGAAGTCGGGAAGCCAGGCAGAGAGGTTATTTGAGTTCTTTGAGATCTGCAGGAGCCTTAATTTTGGACGGGGGCTGAAAACGGTTAGAATTCAACAGACCATTGAGGATCAAACTGATGCTCCCAAGGAAACTGTTGTGGTAGAAGGGGACTTGTTAATCGACCATGATGATAATAAGGAACAAAAATCAGCACCTCAACATCCAAGTGACCAGAGTGAGGCTGCTGCGACAACACAAATTTTTGACCTGCTGAGCTTTGATGAAGTTATTCCAGTAACATTAGAGTCAGATGAAAACAATTCCCTGGCACTAGCAATCGTTCCATCGGATTCCAAAACAGATGGTCTCAATTCTACAACCTCCAACTCTAGTTGGGAGATTGAACTTTTTACACCAACTTCTGATGGAGCTGCAGTTCAAGAGACACCATCAACTTCTAATGCAGCTGGAGTTGCAGAAACTAAGTTGGCTGGTGGGCTAGACAGATCGACACTGGACAGTCTGTATGATAATGCAATGGCAAGTACACCAAATCAGAACAACATGTTGTACTCCCCAGCCGCACTGGCACCCTCTAATCCTTTTGAAGATGTTGCTACTTCTTCATACCAATTCCAAGACCCTTATTATGCTTCCAGCAATGCAACAACCCCAGCAAACTTACAAATGGCTATCATGACCCAACAACAACAATATTTCATGATGATGCAGCAACAACAGTCTCCCAGCATTGTCCAAAATCCACCGAGTCCTTACCAAAATCTACCAAGTCCTTGCCACAATCCACCTAGTCCTTTCCAAAATTTACCAAATCCTTTCCAAAACCCACCAACACCAAGTCCTAGCCAAAATCCACCAAGTCCTTTCCAAAATTTACCAAATCCTTTCCAAAATTCACCAACACCAAGTCCTAGCCAAAATCCACCAACACCAAGTCCTTTCCAAAATTCACCAACACCAAGTCCTAACCAAAATCCACCAACACCAAGTCCTTTCCAAAATCCACCAAGTCCATTAACCTCTTCTGGGAACCCTTTTGCTGGGCAGATCAGTAATCCTCCACCTCAAGATTCACACAATGGCCTCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANTH

Protein Analysis

613

Amino Acids

67.27

Weight (kDa)

5.26

Isoelectric Point (pI)

58.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANTH PF07651 30 - 284 8.7e-68 ANTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 744
AarI CACCTGC 1 cut(s) 626
Acc36I ACCTGC 3 cut(s) 547, 626, 1002
AccB1I GGYRCC 2 cut(s) 225, 1315
AciI CCGC 1 cut(s) 1308
AclWI GGATC 1 cut(s) 861
AcsI RAATTY 8 cut(s) 77, 738, 834, 984, 1549, 1618, 1639, 1693
AcuI CTGAAG 2 cut(s) 213, 488
AcyI GRCGYC 1 cut(s) 226
AfaI GTAC 2 cut(s) 1273, 1298
AfiI CCNNNNNNNGG 5 cut(s) 235, 587, 964, 1773, 1787
AflIII ACRYGT 2 cut(s) 145, 1290
AjnI CCWGG 5 cut(s) 221, 410, 447, 759, 1050
AloI GAACNNNNNNTCC 2 cut(s) 1146, 1178
AluBI AGCT 6 cut(s) 30, 176, 336, 1002, 1157, 1193
AluI AGCT 6 cut(s) 30, 176, 336, 1002, 1157, 1193
Alw21I GWGCWC 1 cut(s) 289
Alw26I GTCTC 3 cut(s) 1097, 1163, 1473
AlwI GGATC 1 cut(s) 861
AoxI GGCC 2 cut(s) 108, 1828
ApeKI GCWGC 8 cut(s) 5, 659, 709, 968, 971, 1157, 1190, 1456
ApoI RAATTY 8 cut(s) 77, 738, 834, 984, 1549, 1618, 1639, 1693
ArsI GACNNNNNNTTYG 2 cut(s) 683, 715
Asp700I GAANNNNTTC 1 cut(s) 1014
AspLEI GCGC 1 cut(s) 228
AsuHPI GGTGA 4 cut(s) 86, 650, 1635, 1689
BanI GGYRCC 2 cut(s) 225, 1315
BauI CACGAG 1 cut(s) 186
Bbv12I GWGCWC 1 cut(s) 289
BbvI GCAGC 8 cut(s) 17, 646, 721, 955, 958, 1144, 1202, 1468
BccI CCATC 5 cut(s) 665, 1078, 1082, 1145, 1183
BciT130I CCWGG 5 cut(s) 223, 412, 449, 761, 1052
BcoDI GTCTC 3 cut(s) 1097, 1163, 1473
BfaI CTAG 7 cut(s) 218, 1058, 1116, 1226, 1536, 1590, 1659
BfmI CTRYAG 2 cut(s) 793, 1158
BfoI RGCGCY 1 cut(s) 229
BfuAI ACCTGC 3 cut(s) 547, 626, 1002
BglI GCCNNNNNGGC 1 cut(s) 1313
BglII AGATCT 1 cut(s) 789
BisI GCNGC 9 cut(s) 6, 660, 710, 969, 972, 1158, 1191, 1308, 1457
BlpI GCTNAGC 1 cut(s) 998
BlsI GCNGC 9 cut(s) 7, 661, 711, 970, 973, 1159, 1192, 1309, 1458
Bme1390I CCNGG 5 cut(s) 223, 412, 449, 761, 1052
BmiI GGNNCC 4 cut(s) 227, 800, 1317, 1778
BmrFI CCNGG 5 cut(s) 223, 412, 449, 761, 1052
BmsI GCATC 6 cut(s) 437, 541, 696, 709, 853, 1443
BpmI CTGGAG 3 cut(s) 358, 470, 1215
Bpu1102I GCTNAGC 1 cut(s) 998
BpuEI CTTGAG 3 cut(s) 52, 514, 1797
BsaAI YACGTR 1 cut(s) 164
BsaHI GRCGYC 1 cut(s) 226
BsaI GGTCTC 1 cut(s) 1097
BsaJI CCNNGG 5 cut(s) 105, 411, 501, 870, 1050
BsaXI ACNNNNNCTCC 6 cut(s) 331, 361, 850, 880, 1146, 1176
Bsc4I CCNNNNNNNGG 5 cut(s) 235, 587, 964, 1773, 1787
Bse1I ACTGG 3 cut(s) 1019, 1245, 1317
Bse3DI GCAATG 3 cut(s) 128, 1269, 1393
BseBI CCWGG 5 cut(s) 223, 412, 449, 761, 1052
BseDI CCNNGG 5 cut(s) 105, 411, 501, 870, 1050
BseGI GGATG 2 cut(s) 382, 946
BseLI CCNNNNNNNGG 5 cut(s) 235, 587, 964, 1773, 1787
BseMI GCAATG 3 cut(s) 128, 1269, 1393
BseMII CTCAG 2 cut(s) 281, 989
BseNI ACTGG 3 cut(s) 1019, 1245, 1317
BseXI GCAGC 8 cut(s) 17, 646, 721, 955, 958, 1144, 1202, 1468
BseYI CCCAGC 4 cut(s) 1303, 1399, 1472, 1787
BsgI GTGCAG 1 cut(s) 33
BshFI GGCC 2 cut(s) 110, 1830
BshNI GGYRCC 2 cut(s) 225, 1315
BsiHKAI GWGCWC 1 cut(s) 289
BslFI GGGAC 2 cut(s) 604, 908
BslI CCNNNNNNNGG 5 cut(s) 235, 587, 964, 1773, 1787
BsmAI GTCTC 3 cut(s) 1097, 1163, 1473
BsmFI GGGAC 2 cut(s) 604, 908
BsnI GGCC 2 cut(s) 110, 1830
Bso31I GGTCTC 1 cut(s) 1097
Bsp1286I GDGCHC 1 cut(s) 289
Bsp143I GATC 5 cut(s) 487, 789, 853, 1232, 1794
Bsp1720I GCTNAGC 1 cut(s) 998
BspACI CCGC 1 cut(s) 1308
BspANI GGCC 2 cut(s) 110, 1830
BspCNI CTCAG 2 cut(s) 282, 990
BspHI TCATGA 2 cut(s) 1422, 1446
BspLI GGNNCC 4 cut(s) 227, 800, 1317, 1778
BspMAI CTGCAG 2 cut(s) 797, 1162
BspMI ACCTGC 3 cut(s) 547, 626, 1002
BspPI GGATC 1 cut(s) 861
BspT107I GGYRCC 2 cut(s) 225, 1315
BspTNI GGTCTC 1 cut(s) 1097
BsrDI GCAATG 3 cut(s) 128, 1269, 1393
BsrI ACTGG 3 cut(s) 1019, 1245, 1317
BssECI CCNNGG 5 cut(s) 105, 411, 501, 870, 1050
BssMI GATC 5 cut(s) 487, 789, 853, 1232, 1794
BssNI GRCGYC 1 cut(s) 226
BssSI CACGAG 1 cut(s) 186
BssT1I CCWWGG 3 cut(s) 105, 501, 870
Bst2BI CACGAG 1 cut(s) 186
Bst2UI CCWGG 5 cut(s) 223, 412, 449, 761, 1052
Bst4CI ACNGT 8 cut(s) 52, 245, 268, 284, 829, 880, 1247, 1467
Bst6I CTCTTC 1 cut(s) 1774
BstACI GRCGYC 1 cut(s) 226
BstAPI GCANNNNNTGC 1 cut(s) 11
BstBAI YACGTR 1 cut(s) 164
BstC8I GCNNGC 2 cut(s) 16, 578
BstDEI CTNAG 5 cut(s) 234, 290, 527, 998, 1209
BstENI CCTNNNNNAGG 1 cut(s) 233
BstF5I GGATG 2 cut(s) 382, 946
BstH2I RGCGCY 1 cut(s) 229
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 5 cut(s) 490, 792, 856, 1235, 1797
BstMAI GTCTC 3 cut(s) 1097, 1163, 1473
BstMBI GATC 5 cut(s) 487, 789, 853, 1232, 1794
BstMWI GCNNNNNNNGC 6 cut(s) 11, 173, 197, 728, 1199, 1313
BstNI CCWGG 5 cut(s) 223, 412, 449, 761, 1052
BstNSI RCATGY 3 cut(s) 149, 215, 1294
BstSCI CCNGG 5 cut(s) 221, 410, 447, 759, 1050
BstSFI CTRYAG 2 cut(s) 793, 1158
BstV1I GCAGC 8 cut(s) 17, 646, 721, 955, 958, 1144, 1202, 1468
BstX2I RGATCY 1 cut(s) 789
BstXI CCANNNNNNTGG 1 cut(s) 396
BstYI RGATCY 1 cut(s) 789
BsuRI GGCC 2 cut(s) 110, 1830
BtsCI GGATG 2 cut(s) 382, 946
BtsIMutI CAGTG 3 cut(s) 257, 1238, 1310
BveI ACCTGC 3 cut(s) 547, 626, 1002
Cac8I GCNNGC 2 cut(s) 16, 578
CciI TCATGA 2 cut(s) 1422, 1446
CfoI GCGC 1 cut(s) 228
CseI GACGC 1 cut(s) 134
Csp6I GTAC 2 cut(s) 1272, 1297
CviAII CATG 8 cut(s) 119, 146, 212, 396, 911, 1291, 1423, 1447
CviQI GTAC 2 cut(s) 1272, 1297
DdeI CTNAG 5 cut(s) 234, 290, 527, 998, 1209
DinI GGCGCC 1 cut(s) 227
DpnI GATC 5 cut(s) 489, 791, 855, 1234, 1796
DpnII GATC 5 cut(s) 487, 789, 853, 1232, 1794
Eam1104I CTCTTC 1 cut(s) 1774
EarI CTCTTC 1 cut(s) 1774
Eco130I CCWWGG 3 cut(s) 105, 501, 870
Eco31I GGTCTC 1 cut(s) 1097
Eco57I CTGAAG 2 cut(s) 213, 488
EcoNI CCTNNNNNAGG 1 cut(s) 233
EcoRI GAATTC 1 cut(s) 834
EcoRII CCWGG 5 cut(s) 221, 410, 447, 759, 1050
EcoT14I CCWWGG 3 cut(s) 105, 501, 870
EcoT22I ATGCAT 1 cut(s) 430
EgeI GGCGCC 1 cut(s) 227
EheI GGCGCC 1 cut(s) 227
ErhI CCWWGG 3 cut(s) 105, 501, 870
FaeI CATG 8 cut(s) 122, 149, 215, 399, 914, 1294, 1426, 1450
FaqI GGGAC 2 cut(s) 604, 908
FatI CATG 8 cut(s) 118, 145, 211, 395, 910, 1290, 1422, 1446
Fnu4HI GCNGC 9 cut(s) 6, 660, 710, 969, 972, 1158, 1191, 1308, 1457
FokI GGATG 2 cut(s) 389, 933
Fsp4HI GCNGC 9 cut(s) 6, 660, 710, 969, 972, 1158, 1191, 1308, 1457
FspBI CTAG 7 cut(s) 218, 1058, 1116, 1226, 1536, 1590, 1659
GlaI GCGC 1 cut(s) 227
GluI GCNGC 9 cut(s) 6, 660, 710, 969, 972, 1158, 1191, 1308, 1457
GsaI CCCAGC 4 cut(s) 1307, 1403, 1476, 1791
GsuI CTGGAG 3 cut(s) 358, 470, 1215
HaeII RGCGCY 1 cut(s) 229
HaeIII GGCC 2 cut(s) 110, 1830
HgaI GACGC 1 cut(s) 134
HhaI GCGC 1 cut(s) 228
Hin1I GRCGYC 1 cut(s) 226
Hin1II CATG 8 cut(s) 122, 149, 215, 399, 914, 1294, 1426, 1450
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HincII GTYRAC 1 cut(s) 691
HindII GTYRAC 1 cut(s) 691
HindIII AAGCTT 1 cut(s) 28
HinfI GANTC 6 cut(s) 305, 610, 1031, 1076, 1495, 1817
HphI GGTGA 4 cut(s) 86, 650, 1635, 1689
Hpy166II GTNNAC 2 cut(s) 691, 1274
Hpy188I TCNGA 7 cut(s) 291, 357, 483, 1036, 1075, 1150, 1284
Hpy188III TCNNGA 9 cut(s) 180, 437, 466, 569, 753, 1166, 1423, 1447, 1814
Hpy8I GTNNAC 2 cut(s) 691, 1274
HpyAV CCTTC 3 cut(s) 244, 575, 884
HpyCH4III ACNGT 8 cut(s) 52, 245, 268, 284, 829, 880, 1247, 1467
HpyCH4IV ACGT 1 cut(s) 163
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 173, 197, 728, 1199, 1313
HpyF3I CTNAG 5 cut(s) 234, 290, 527, 998, 1209
HpySE526I ACGT 1 cut(s) 163
Hsp92I GRCGYC 1 cut(s) 226
Hsp92II CATG 8 cut(s) 122, 149, 215, 399, 914, 1294, 1426, 1450
HspAI GCGC 1 cut(s) 226
KasI GGCGCC 1 cut(s) 225
Kzo9I GATC 5 cut(s) 487, 789, 853, 1232, 1794
LmnI GCTCC 3 cut(s) 798, 871, 1154
Lsp1109I GCAGC 8 cut(s) 17, 646, 721, 955, 958, 1144, 1202, 1468
LweI GCATC 6 cut(s) 437, 541, 696, 709, 853, 1443
MaeI CTAG 7 cut(s) 218, 1058, 1116, 1226, 1536, 1590, 1659
MaeII ACGT 1 cut(s) 163
MaeIII GTNAC 3 cut(s) 148, 953, 1021
MalI GATC 5 cut(s) 489, 791, 855, 1234, 1796
MboI GATC 5 cut(s) 487, 789, 853, 1232, 1794
MboII GAAGA 4 cut(s) 452, 1341, 1346, 1761
MflI RGATCY 1 cut(s) 789
MhlI GDGCHC 1 cut(s) 289
Mly113I GGCGCC 1 cut(s) 226
MlyI GAGTC 2 cut(s) 1040, 1504
MmeI TCCRAC 2 cut(s) 227, 1134
Mph1103I ATGCAT 1 cut(s) 430
MroXI GAANNNNTTC 1 cut(s) 1014
MseI TTAA 6 cut(s) 81, 327, 726, 804, 902, 1763
MslI CAYNNNNRTG 2 cut(s) 951, 1451
MspA1I CMGCKG 1 cut(s) 1193
MspR9I CCNGG 5 cut(s) 223, 412, 449, 761, 1052
MvaI CCWGG 5 cut(s) 223, 412, 449, 761, 1052
MwoI GCNNNNNNNGC 6 cut(s) 11, 173, 197, 728, 1199, 1313
NarI GGCGCC 1 cut(s) 226
NdeII GATC 5 cut(s) 487, 789, 853, 1232, 1794
NlaIII CATG 8 cut(s) 122, 149, 215, 399, 914, 1294, 1426, 1450
NlaIV GGNNCC 4 cut(s) 227, 800, 1317, 1778
NmuCI GTSAC 1 cut(s) 953
NsiI ATGCAT 1 cut(s) 430
NspI RCATGY 3 cut(s) 149, 215, 1294
PagI TCATGA 2 cut(s) 1422, 1446
PaqCI CACCTGC 1 cut(s) 626
PciI ACATGT 2 cut(s) 145, 1290
PdmI GAANNNNTTC 1 cut(s) 1014
PfeI GAWTC 4 cut(s) 305, 610, 1076, 1817
PkrI GCNGC 9 cut(s) 7, 661, 711, 970, 973, 1159, 1192, 1309, 1458
PleI GAGTC 2 cut(s) 1039, 1503
PluTI GGCGCC 1 cut(s) 229
PpsI GAGTC 2 cut(s) 1039, 1503
Ppu21I YACGTR 1 cut(s) 164
PscI ACATGT 2 cut(s) 145, 1290
PsiI TTATAA 1 cut(s) 744
Psp6I CCWGG 5 cut(s) 221, 410, 447, 759, 1050
PspFI CCCAGC 4 cut(s) 1303, 1399, 1472, 1787
PspGI CCWGG 5 cut(s) 221, 410, 447, 759, 1050
PspN4I GGNNCC 4 cut(s) 227, 800, 1317, 1778
PstI CTGCAG 2 cut(s) 797, 1162
PsuI RGATCY 1 cut(s) 789
PvuII CAGCTG 1 cut(s) 1193
RsaI GTAC 2 cut(s) 1273, 1298
RsaNI GTAC 2 cut(s) 1272, 1297
RseI CAYNNNNRTG 2 cut(s) 951, 1451
SaqAI TTAA 6 cut(s) 81, 327, 726, 804, 902, 1763
SatI GCNGC 9 cut(s) 6, 660, 710, 969, 972, 1158, 1191, 1308, 1457
Sau3AI GATC 5 cut(s) 487, 789, 853, 1232, 1794
SchI GAGTC 2 cut(s) 1040, 1504
ScrFI CCNGG 5 cut(s) 223, 412, 449, 761, 1052
SduI GDGCHC 1 cut(s) 289
SfaNI GCATC 6 cut(s) 437, 541, 696, 709, 853, 1443
SfcI CTRYAG 2 cut(s) 793, 1158
SfoI GGCGCC 1 cut(s) 227
SmiMI CAYNNNNRTG 2 cut(s) 951, 1451
SmlI CTYRAG 3 cut(s) 31, 493, 1812
SmoI CTYRAG 3 cut(s) 31, 493, 1812
SsiI CCGC 1 cut(s) 1308
SspDI GGCGCC 1 cut(s) 225
SspI AATATT 1 cut(s) 1442
SspMI CTAG 7 cut(s) 218, 1058, 1116, 1226, 1536, 1590, 1659
StyD4I CCNGG 5 cut(s) 221, 410, 447, 759, 1050
StyI CCWWGG 3 cut(s) 105, 501, 870
TaaI ACNGT 8 cut(s) 52, 245, 268, 284, 829, 880, 1247, 1467
TaiI ACGT 1 cut(s) 166
TaqI TCGA 2 cut(s) 906, 1235
TatI WGTACW 2 cut(s) 1271, 1296
TauI GCSGC 1 cut(s) 1310
TfiI GAWTC 4 cut(s) 305, 610, 1076, 1817
Tru1I TTAA 6 cut(s) 81, 327, 726, 804, 902, 1763
Tru9I TTAA 6 cut(s) 81, 327, 726, 804, 902, 1763
TscAI CASTG 3 cut(s) 264, 1245, 1317
TseFI GTSAC 1 cut(s) 953
TseI GCWGC 8 cut(s) 5, 659, 709, 968, 971, 1157, 1190, 1456
Tsp45I GTSAC 1 cut(s) 953
TspDTI ATGAA 6 cut(s) 297, 393, 1023, 1053, 1341, 1435
TspRI CASTG 3 cut(s) 264, 1245, 1317
XagI CCTNNNNNAGG 1 cut(s) 233
XapI RAATTY 8 cut(s) 77, 738, 834, 984, 1549, 1618, 1639, 1693
XceI RCATGY 3 cut(s) 149, 215, 1294
XmnI GAANNNNTTC 1 cut(s) 1014
XspI CTAG 7 cut(s) 218, 1058, 1116, 1226, 1536, 1590, 1659
Zsp2I ATGCAT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.