Rroxscaffold_5G00349440

Clathrin assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0011552
Physical Location & Seq
Reverse (-)
22441933 .. 22445434
3502 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00349440.1

Sequence Viewer

Length: 1344 bp
ATGGCAGCAGGCGCAGGCAGTCAGCAAAGCTTGAGAAAAGCGTTGAAAACAGTTGGATTGGCGAAAGCCAATGGTGAATTTAAGGTATTGGATAATGCCATTTCCAAGGCCACAAGACATGATGACGCATTGCCAAAGGAGAAACATGTTACTACTATACTACGTGCAATTCCAGCTTCAAGACCTCGTGCTGAAGTTGCTTATTGCATACATGCTCTAGCCAGGCGCCTTTCTAAGGCTCACAGTTGGAAGGTAGCACTGAAAACTGTGATGATTATACACCGTGCTCTGAGGGAAGTTGATGATACATTTTGTGACGCTCTAATTAAGTACAGCTGGAGTAGAGGTCATATTCTGAACATATCTCATTCATTCTTTGGCATGAAGCATGGGGGTTATTCTACCTGGGTTCGTTTATATGCATCATATCTTGAAGAACGCCTGGAGTGTTTTCGTGTCCTCAAGTATGATGTTCAGAAAGATCACTTGTGTAACATGATGGCATTTAGAATAAAGGATCTGACATGTTCAATACAATCTTTACAGAGAACCAAGGAACTTGAAACCCCAGACTTACTAAGGCATCTACCTGCCTTGCAACAGCTTCTTTCTCGCCTTCTTGATTGCCAGGTTGCAGGTGAAAGTGCCAAGTTGTACGCTGCAATTACAGATGGTATTGTGAATTTAGTTGACAAGTTCTTTGAGATGCAGCGCGATGATGCAGCAGAGAGCTCCCCTGAATCATTCTTGACCACTATGGAAGATTATGTTAAGGAGGCATCCGGTGTTGTAATGCTTGAACTTCCCCCAACCATTGAGGATCAAACTGATGCTCCCAAGGAAACTGTTGTGGTACAAGGGGACTTGTTAATCGACCATGATGATAATAAGGAACAAAAATCAGCACCTCAACATCCAAGTGACCAGAGTGAGGCTGCTGCGACAACACAAATTTTTGACCTGCTGAGCTTTGATGAAGTTATTCCAGTAACATCAGAGTCGGATGAAAACAATTCCCTGGCACTAGCAATCAATCCGTCAGATTCCAAAACAGATGGTCTCAATTCTACAACCTCCAACTCTAGTTGGGAGATTGAGCTTTTTACACCAACTTCTAATGGAGCTGCAGTTCAAGAGACACCATCAACTTCTAATGCAGCTGGAGTTGCAGAAACCAAGTTGGTGAGTCTTCCTCCACATTTGACAACACTATTTAGGATTTTTCTACTGACACTTGGGCTTTTGATACATATTGCTATTCTCTTCAATTGTTTTGTCATCCAAATCTCATCTAAGGGTCAGTTGTTTGCTTTGAACCATGCTTTTGTTGTAACATGGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANTH

Protein Analysis

447

Amino Acids

49.47

Weight (kDa)

5.77

Isoelectric Point (pI)

39.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANTH PF07651 30 - 244 1.3e-42 ANTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 626
Acc36I ACCTGC 3 cut(s) 598, 626, 969
AccB1I GGYRCC 1 cut(s) 225
AccII CGCG 1 cut(s) 714
AclWI GGATC 2 cut(s) 525, 828
AcsI RAATTY 3 cut(s) 77, 682, 951
AcuI CTGAAG 1 cut(s) 213
AcyI GRCGYC 1 cut(s) 226
AfaI GTAC 3 cut(s) 332, 656, 855
AfiI CCNNNNNNNGG 2 cut(s) 235, 931
AflIII ACRYGT 2 cut(s) 145, 524
AgsI TTSAA 9 cut(s) 46, 180, 434, 531, 563, 800, 1133, 1267, 1315
AjnI CCWGG 5 cut(s) 221, 404, 441, 627, 1017
AloI GAACNNNNNNTCC 2 cut(s) 1113, 1145
AluBI AGCT 9 cut(s) 30, 176, 336, 604, 732, 969, 1099, 1124, 1160
AluI AGCT 9 cut(s) 30, 176, 336, 604, 732, 969, 1099, 1124, 1160
Alw21I GWGCWC 2 cut(s) 289, 734
Alw26I GTCTC 2 cut(s) 1064, 1130
AlwI GGATC 2 cut(s) 525, 828
AoxI GGCC 1 cut(s) 108
ApeKI GCWGC 8 cut(s) 5, 659, 709, 722, 935, 938, 1124, 1157
ApoI RAATTY 3 cut(s) 77, 682, 951
ArsI GACNNNNNNTTYG 2 cut(s) 683, 715
Asp700I GAANNNNTTC 1 cut(s) 981
AspLEI GCGC 3 cut(s) 14, 228, 714
AsuHPI GGTGA 3 cut(s) 86, 650, 1195
BanI GGYRCC 1 cut(s) 225
BanII GRGCYC 1 cut(s) 734
BauI CACGAG 1 cut(s) 186
BbsI GAAGAC 1 cut(s) 1181
Bbv12I GWGCWC 2 cut(s) 289, 734
BbvI GCAGC 8 cut(s) 17, 646, 721, 734, 922, 925, 1111, 1169
BccI CCATC 4 cut(s) 493, 665, 1049, 1150
BciT130I CCWGG 5 cut(s) 223, 406, 443, 629, 1019
BcoDI GTCTC 2 cut(s) 1064, 1130
BfaI CTAG 3 cut(s) 218, 1025, 1083
BfmI CTRYAG 1 cut(s) 1125
BfoI RGCGCY 1 cut(s) 229
BfuAI ACCTGC 3 cut(s) 598, 626, 969
BisI GCNGC 8 cut(s) 6, 660, 710, 723, 936, 939, 1125, 1158
BlpI GCTNAGC 1 cut(s) 965
BlsI GCNGC 8 cut(s) 7, 661, 711, 724, 937, 940, 1126, 1159
Bme1390I CCNGG 5 cut(s) 223, 406, 443, 629, 1019
BmiI GGNNCC 1 cut(s) 227
BmrFI CCNGG 5 cut(s) 223, 406, 443, 629, 1019
BmsI GCATC 6 cut(s) 431, 592, 696, 709, 788, 820
BpiI GAAGAC 1 cut(s) 1181
BplI GAGNNNNNCTC 2 cut(s) 1177, 1209
BpmI CTGGAG 3 cut(s) 358, 464, 1182
Bpu1102I GCTNAGC 1 cut(s) 965
BpuEI CTTGAG 2 cut(s) 52, 446
BsaAI YACGTR 1 cut(s) 164
BsaHI GRCGYC 1 cut(s) 226
BsaI GGTCTC 1 cut(s) 1064
BsaJI CCNNGG 5 cut(s) 105, 405, 552, 837, 1017
BsaWI WCCGGW 1 cut(s) 782
BsaXI ACNNNNNCTCC 6 cut(s) 331, 361, 817, 847, 1113, 1143
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 931
Bse1I ACTGG 1 cut(s) 986
Bse3DI GCAATG 1 cut(s) 128
BseBI CCWGG 5 cut(s) 223, 406, 443, 629, 1019
BseDI CCNNGG 5 cut(s) 105, 405, 552, 837, 1017
BseGI GGATG 4 cut(s) 779, 913, 1009, 1278
BseLI CCNNNNNNNGG 2 cut(s) 235, 931
BseMI GCAATG 1 cut(s) 128
BseMII CTCAG 2 cut(s) 281, 956
BseNI ACTGG 1 cut(s) 986
BseXI GCAGC 8 cut(s) 17, 646, 721, 734, 922, 925, 1111, 1169
Bsh1236I CGCG 1 cut(s) 714
BshFI GGCC 1 cut(s) 110
BshNI GGYRCC 1 cut(s) 225
BsiHKAI GWGCWC 2 cut(s) 289, 734
BsiSI CCGG 1 cut(s) 783
BslFI GGGAC 1 cut(s) 875
BslI CCNNNNNNNGG 2 cut(s) 235, 931
BsmAI GTCTC 2 cut(s) 1064, 1130
BsmFI GGGAC 1 cut(s) 875
BsnI GGCC 1 cut(s) 110
Bso31I GGTCTC 1 cut(s) 1064
Bsp1286I GDGCHC 2 cut(s) 289, 734
Bsp143I GATC 3 cut(s) 481, 517, 820
Bsp1720I GCTNAGC 1 cut(s) 965
BspANI GGCC 1 cut(s) 110
BspCNI CTCAG 2 cut(s) 282, 957
BspFNI CGCG 1 cut(s) 714
BspLI GGNNCC 1 cut(s) 227
BspMAI CTGCAG 1 cut(s) 1129
BspMI ACCTGC 3 cut(s) 598, 626, 969
BspPI GGATC 2 cut(s) 525, 828
BspT107I GGYRCC 1 cut(s) 225
BspTNI GGTCTC 1 cut(s) 1064
BsrDI GCAATG 1 cut(s) 128
BsrI ACTGG 1 cut(s) 986
BssECI CCNNGG 5 cut(s) 105, 405, 552, 837, 1017
BssMI GATC 3 cut(s) 481, 517, 820
BssNI GRCGYC 1 cut(s) 226
BssSI CACGAG 1 cut(s) 186
BssT1I CCWWGG 3 cut(s) 105, 552, 837
Bst2BI CACGAG 1 cut(s) 186
Bst2UI CCWGG 5 cut(s) 223, 406, 443, 629, 1019
Bst4CI ACNGT 5 cut(s) 52, 245, 268, 284, 847
Bst6I CTCTTC 1 cut(s) 1268
BstACI GRCGYC 1 cut(s) 226
BstBAI YACGTR 1 cut(s) 164
BstC8I GCNNGC 2 cut(s) 10, 16
BstDEI CTNAG 5 cut(s) 234, 290, 578, 965, 1293
BstENI CCTNNNNNAGG 1 cut(s) 233
BstF5I GGATG 4 cut(s) 779, 913, 1009, 1278
BstFNI CGCG 1 cut(s) 714
BstH2I RGCGCY 1 cut(s) 229
BstHHI GCGC 3 cut(s) 14, 228, 714
BstKTI GATC 3 cut(s) 484, 520, 823
BstMAI GTCTC 2 cut(s) 1064, 1130
BstMBI GATC 3 cut(s) 481, 517, 820
BstMWI GCNNNNNNNGC 4 cut(s) 11, 173, 197, 1166
BstNI CCWGG 5 cut(s) 223, 406, 443, 629, 1019
BstNSI RCATGY 3 cut(s) 149, 215, 528
BstSCI CCNGG 5 cut(s) 221, 404, 441, 627, 1017
BstSFI CTRYAG 1 cut(s) 1125
BstUI CGCG 1 cut(s) 714
BstV1I GCAGC 8 cut(s) 17, 646, 721, 734, 922, 925, 1111, 1169
BstV2I GAAGAC 1 cut(s) 1181
BstX2I RGATCY 1 cut(s) 517
BstYI RGATCY 1 cut(s) 517
BsuRI GGCC 1 cut(s) 110
BtgZI GCGATG 1 cut(s) 729
BtsCI GGATG 4 cut(s) 779, 913, 1009, 1278
BtsIMutI CAGTG 1 cut(s) 257
BveI ACCTGC 3 cut(s) 598, 626, 969
Cac8I GCNNGC 2 cut(s) 10, 16
CfoI GCGC 3 cut(s) 14, 228, 714
CseI GACGC 2 cut(s) 134, 326
Csp6I GTAC 3 cut(s) 331, 655, 854
CviQI GTAC 3 cut(s) 331, 655, 854
DdeI CTNAG 5 cut(s) 234, 290, 578, 965, 1293
DinI GGCGCC 1 cut(s) 227
DpnI GATC 3 cut(s) 483, 519, 822
DpnII GATC 3 cut(s) 481, 517, 820
Eam1104I CTCTTC 1 cut(s) 1268
EarI CTCTTC 1 cut(s) 1268
Ecl136II GAGCTC 1 cut(s) 732
Eco130I CCWWGG 3 cut(s) 105, 552, 837
Eco24I GRGCYC 1 cut(s) 734
Eco31I GGTCTC 1 cut(s) 1064
Eco53kI GAGCTC 1 cut(s) 732
Eco57I CTGAAG 1 cut(s) 213
EcoICRI GAGCTC 1 cut(s) 732
EcoNI CCTNNNNNAGG 1 cut(s) 233
EcoRII CCWGG 5 cut(s) 221, 404, 441, 627, 1017
EcoT14I CCWWGG 3 cut(s) 105, 552, 837
EcoT22I ATGCAT 1 cut(s) 424
EcoT38I GRGCYC 1 cut(s) 734
EgeI GGCGCC 1 cut(s) 227
EheI GGCGCC 1 cut(s) 227
ErhI CCWWGG 3 cut(s) 105, 552, 837
FaqI GGGAC 1 cut(s) 875
Fnu4HI GCNGC 8 cut(s) 6, 660, 710, 723, 936, 939, 1125, 1158
FokI GGATG 4 cut(s) 766, 900, 1016, 1265
FriOI GRGCYC 1 cut(s) 734
Fsp4HI GCNGC 8 cut(s) 6, 660, 710, 723, 936, 939, 1125, 1158
FspBI CTAG 3 cut(s) 218, 1025, 1083
GlaI GCGC 3 cut(s) 13, 227, 713
GluI GCNGC 8 cut(s) 6, 660, 710, 723, 936, 939, 1125, 1158
GsuI CTGGAG 3 cut(s) 358, 464, 1182
HaeII RGCGCY 1 cut(s) 229
HaeIII GGCC 1 cut(s) 110
HapII CCGG 1 cut(s) 783
HgaI GACGC 2 cut(s) 134, 326
HhaI GCGC 3 cut(s) 14, 228, 714
Hin1I GRCGYC 1 cut(s) 226
Hin6I GCGC 3 cut(s) 12, 226, 712
HinP1I GCGC 3 cut(s) 12, 226, 712
HincII GTYRAC 1 cut(s) 691
HindII GTYRAC 1 cut(s) 691
HindIII AAGCTT 1 cut(s) 28
HinfI GANTC 4 cut(s) 740, 998, 1043, 1186
HpaII CCGG 1 cut(s) 783
HphI GGTGA 3 cut(s) 86, 650, 1195
Hpy166II GTNNAC 1 cut(s) 691
Hpy188I TCNGA 7 cut(s) 291, 357, 477, 522, 997, 1003, 1042
Hpy188III TCNNGA 5 cut(s) 180, 431, 620, 748, 1133
Hpy8I GTNNAC 1 cut(s) 691
HpyAV CCTTC 2 cut(s) 244, 626
HpyCH4III ACNGT 5 cut(s) 52, 245, 268, 284, 847
HpyCH4IV ACGT 1 cut(s) 163
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 173, 197, 1166
HpyF3I CTNAG 5 cut(s) 234, 290, 578, 965, 1293
HpySE526I ACGT 1 cut(s) 163
Hsp92I GRCGYC 1 cut(s) 226
HspAI GCGC 3 cut(s) 12, 226, 712
KasI GGCGCC 1 cut(s) 225
Kzo9I GATC 3 cut(s) 481, 517, 820
LmnI GCTCC 3 cut(s) 737, 838, 1121
Lsp1109I GCAGC 8 cut(s) 17, 646, 721, 734, 922, 925, 1111, 1169
LweI GCATC 6 cut(s) 431, 592, 696, 709, 788, 820
MaeI CTAG 3 cut(s) 218, 1025, 1083
MaeII ACGT 1 cut(s) 163
MaeIII GTNAC 6 cut(s) 148, 314, 491, 920, 988, 1330
MalI GATC 3 cut(s) 483, 519, 822
MboI GATC 3 cut(s) 481, 517, 820
MboII GAAGA 4 cut(s) 446, 773, 1181, 1255
MfeI CAATTG 1 cut(s) 1267
MflI RGATCY 1 cut(s) 517
MhlI GDGCHC 2 cut(s) 289, 734
MluCI AATT 9 cut(s) 77, 168, 324, 663, 682, 951, 1012, 1063, 1267
Mly113I GGCGCC 1 cut(s) 226
MlyI GAGTC 2 cut(s) 1007, 1195
MmeI TCCRAC 4 cut(s) 34, 227, 981, 1101
Mph1103I ATGCAT 1 cut(s) 424
MroXI GAANNNNTTC 1 cut(s) 981
MseI TTAA 4 cut(s) 81, 327, 771, 869
MslI CAYNNNNRTG 1 cut(s) 918
MspA1I CMGCKG 2 cut(s) 336, 1160
MspI CCGG 1 cut(s) 783
MspR9I CCNGG 5 cut(s) 223, 406, 443, 629, 1019
MunI CAATTG 1 cut(s) 1267
MvaI CCWGG 5 cut(s) 223, 406, 443, 629, 1019
MvnI CGCG 1 cut(s) 714
MwoI GCNNNNNNNGC 4 cut(s) 11, 173, 197, 1166
NarI GGCGCC 1 cut(s) 226
NdeII GATC 3 cut(s) 481, 517, 820
NlaIV GGNNCC 1 cut(s) 227
NmuCI GTSAC 2 cut(s) 314, 920
NsiI ATGCAT 1 cut(s) 424
NspI RCATGY 3 cut(s) 149, 215, 528
PaqCI CACCTGC 1 cut(s) 626
PciI ACATGT 2 cut(s) 145, 524
PdmI GAANNNNTTC 1 cut(s) 981
PfeI GAWTC 2 cut(s) 740, 1043
PkrI GCNGC 8 cut(s) 7, 661, 711, 724, 937, 940, 1126, 1159
PleI GAGTC 2 cut(s) 1006, 1194
PluTI GGCGCC 1 cut(s) 229
PpsI GAGTC 2 cut(s) 1006, 1194
Ppu21I YACGTR 1 cut(s) 164
PscI ACATGT 2 cut(s) 145, 524
Psp124BI GAGCTC 1 cut(s) 734
Psp6I CCWGG 5 cut(s) 221, 404, 441, 627, 1017
PspGI CCWGG 5 cut(s) 221, 404, 441, 627, 1017
PspN4I GGNNCC 1 cut(s) 227
PstI CTGCAG 1 cut(s) 1129
PsuI RGATCY 1 cut(s) 517
PvuII CAGCTG 2 cut(s) 336, 1160
RsaI GTAC 3 cut(s) 332, 656, 855
RsaNI GTAC 3 cut(s) 331, 655, 854
RseI CAYNNNNRTG 1 cut(s) 918
SacI GAGCTC 1 cut(s) 734
SaqAI TTAA 4 cut(s) 81, 327, 771, 869
SatI GCNGC 8 cut(s) 6, 660, 710, 723, 936, 939, 1125, 1158
Sau3AI GATC 3 cut(s) 481, 517, 820
SchI GAGTC 2 cut(s) 1007, 1195
ScrFI CCNGG 5 cut(s) 223, 406, 443, 629, 1019
SduI GDGCHC 2 cut(s) 289, 734
SfaNI GCATC 6 cut(s) 431, 592, 696, 709, 788, 820
SfcI CTRYAG 1 cut(s) 1125
SfoI GGCGCC 1 cut(s) 227
SmiMI CAYNNNNRTG 1 cut(s) 918
SmlI CTYRAG 2 cut(s) 31, 461
SmoI CTYRAG 2 cut(s) 31, 461
Sse9I AATT 9 cut(s) 77, 168, 324, 663, 682, 951, 1012, 1063, 1267
SspDI GGCGCC 1 cut(s) 225
SspMI CTAG 3 cut(s) 218, 1025, 1083
SstI GAGCTC 1 cut(s) 734
StyD4I CCNGG 5 cut(s) 221, 404, 441, 627, 1017
StyI CCWWGG 3 cut(s) 105, 552, 837
TaaI ACNGT 5 cut(s) 52, 245, 268, 284, 847
TaiI ACGT 1 cut(s) 166
TaqI TCGA 1 cut(s) 873
TasI AATT 9 cut(s) 77, 168, 324, 663, 682, 951, 1012, 1063, 1267
TatI WGTACW 1 cut(s) 330
TfiI GAWTC 2 cut(s) 740, 1043
Tru1I TTAA 4 cut(s) 81, 327, 771, 869
Tru9I TTAA 4 cut(s) 81, 327, 771, 869
TscAI CASTG 1 cut(s) 264
TseFI GTSAC 2 cut(s) 314, 920
TseI GCWGC 8 cut(s) 5, 659, 709, 722, 935, 938, 1124, 1157
Tsp45I GTSAC 2 cut(s) 314, 920
TspDTI ATGAA 4 cut(s) 360, 398, 990, 1020
TspGWI ACGGA 1 cut(s) 1026
TspRI CASTG 1 cut(s) 264
XagI CCTNNNNNAGG 1 cut(s) 233
XapI RAATTY 3 cut(s) 77, 682, 951
XceI RCATGY 3 cut(s) 149, 215, 528
XmnI GAANNNNTTC 1 cut(s) 981
XspI CTAG 3 cut(s) 218, 1025, 1083
Zsp2I ATGCAT 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.