Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003372

Physical Location & Seq

Genomic Coordinates Forward (+)

8628952 .. 8632967

Gene Structure 4016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0054700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGCATATTGATCTCCATTTAGTTGAGAAGGATCCAGAAGCCGCAATAGTATTGTTTTGGAAGGCGATCAATGCCGGAGACAGGGTGGATAGTGCCCTAAAGGACATGGCAATAGTCATGAAGCAGCAAGACAGAGCAGATGAAGCAATTGAAGCAATAATGTCATTCAGGGATCGCTGCTCCAAGCAGGCACAGGAATCCCTAGATAACGTACTAATTGACTTGTACAAGAAATGTGGGAGAATGGAGGAGCAAATAGAGCTATTGAAGCAGAAGCTTCGAATGATTTACCAAGGAGAGGCCTTCAATGGTAAGCTTACCAAGACAGCACGCTCTCATGGAAGGAAGTTCCAGGTCACCATCAAGCAAGAGACCTCCAGGATACTGGGGAACTTAGGTTGGGCCTACATGCAACAAGGGAACCATGTGGCAGCAGAAGTGGTATATCACAAAGCTCAAATCATCGATCCAGATGCCAACAAGGCCTGTAACTTATGCCTCTGCCTGATCAGGCAAGCCCGGTATGCAGAGGCACGGTCAGTTCTTGATGAAGTGTTGCAGGGTAAGCTTTCAGGATCAAGTGAGGACAAGTCGAAAAAACGCGCTGCGGAACTGTTGCAGGAGCTAAAGCATTGCCAGCCTGTAGTCTTGTCATCCAATAATTCGTTAGGTTTAAATATAGAAGATGCTTTTCTGGAGGGGCTTGACCAGTTGGTGAAGCACTGGACCCCTTTAAGATCAAGAAGACTTCCCATCTTTGAAGAGATTTCTCCGCATAGGGATCAGTTAGCGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_2 TPR_8

Protein Analysis

265

Amino Acids

30.11

Weight (kDa)

7.62

Isoelectric Point (pI)

58.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30480 AT4G30480 AT4G30480
fragaria_vesca	FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_4g08690
malus_domestica	MD04G1009600.v1.1 MD16G1260600.v1.1
prunus_persica	Prupe.1G099700_v2.0.a1 Prupe.1G099700_v2.0.a1 Prupe.1G099700_v2.0.a1 Prupe.1G099700_v2.0.a1 Prupe.8G039000_v2.0.a1 Prupe.8G039000_v2.0.a1
pyrus_communis	pycom04g00740 pycom16g22830
rosa_chinensis	RchiOBHm_Chr4g0405181
rosa_laevigata	RLG00000008866
rosa_multiflora	Rmu_sc0004988.1_g000011 Rmu_ssc0000255.1_g000025
rosa_roxburghii	Rroxscaffold_5G00341850 Rroxscaffold_5G00349430
rosa_rugosa	Rorug04G0054700
rosa_samantha	Rh4AG129500 Rh4BG123300 Rh4CG136800 Rh4DG123000
rosa_wichuraiana	Rw4G010460 Rw5G038600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	603
AciI	CCGC	3 cut(s)	42, 608, 773
AclWI	GGATC	6 cut(s)	26, 39, 180, 461, 583, 789
AfaI	GTAC	2 cut(s)	213, 227
AfiI	CCNNNNNNNGG	2 cut(s)	81, 298
AgsI	TTSAA	4 cut(s)	152, 268, 307, 761
AjnI	CCWGG	2 cut(s)	351, 377
AluBI	AGCT	6 cut(s)	262, 277, 316, 455, 568, 625
AluI	AGCT	6 cut(s)	262, 277, 316, 455, 568, 625
Alw26I	GTCTC	2 cut(s)	72, 365
AlwI	GGATC	6 cut(s)	26, 39, 180, 461, 583, 789
AoxI	GGCC	3 cut(s)	300, 402, 483
ApeKI	GCWGC	4 cut(s)	124, 177, 431, 605
AspLEI	GCGC	1 cut(s)	605
AspS9I	GGNCC	2 cut(s)	402, 726
AsuC2I	CCSGG	1 cut(s)	520
AsuHPI	GGTGA	2 cut(s)	349, 727
AsuII	TTCGAA	1 cut(s)	280
AvaII	GGWCC	1 cut(s)	726
BaeGI	GKGCMC	1 cut(s)	97
BamHI	GGATCC	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	751
BbvI	GCAGC	4 cut(s)	136, 164, 443, 592
BccI	CCATC	2 cut(s)	368, 761
BcgI	CGANNNNNNTGC	4 cut(s)	260, 294, 455, 489
BciT130I	CCWGG	2 cut(s)	353, 379
BciVI	GTATCC	1 cut(s)	375
BclI	TGATCA	1 cut(s)	507
BcnI	CCSGG	1 cut(s)	520
BcoDI	GTCTC	2 cut(s)	72, 365
BfaI	CTAG	1 cut(s)	203
BfmI	CTRYAG	1 cut(s)	642
BfuI	GTATCC	1 cut(s)	375
BglI	GCCNNNNNGGC	1 cut(s)	482
BisI	GCNGC	5 cut(s)	42, 125, 178, 432, 606
BlsI	GCNGC	5 cut(s)	43, 126, 179, 433, 607
Bme1390I	CCNGG	3 cut(s)	353, 379, 520
Bme18I	GGWCC	1 cut(s)	726
BmgT120I	GGNCC	2 cut(s)	402, 726
BmiI	GGNNCC	3 cut(s)	33, 422, 728
BmrFI	CCNGG	3 cut(s)	353, 379, 520
BmrI	ACTGGG	1 cut(s)	395
BmsI	GCATC	2 cut(s)	463, 676
BmuI	ACTGGG	1 cut(s)	395
BpiI	GAAGAC	1 cut(s)	751
BpmI	CTGGAG	2 cut(s)	361, 716
Bpu14I	TTCGAA	1 cut(s)	280
BpuMI	CCSGG	1 cut(s)	520
Bsa29I	ATCGAT	1 cut(s)	465
BsaI	GGTCTC	1 cut(s)	365
BsaJI	CCNNGG	1 cut(s)	292
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 298
Bse1I	ACTGG	3 cut(s)	390, 709, 728
Bse3DI	GCAATG	1 cut(s)	631
BseBI	CCWGG	2 cut(s)	353, 379
BseCI	ATCGAT	1 cut(s)	465
BseDI	CCNNGG	1 cut(s)	292
BseGI	GGATG	1 cut(s)	653
BseLI	CCNNNNNNNGG	2 cut(s)	81, 298
BseMI	GCAATG	1 cut(s)	631
BseNI	ACTGG	3 cut(s)	390, 709, 728
BseRI	GAGGAG	1 cut(s)	263
BseSI	GKGCMC	1 cut(s)	97
BseXI	GCAGC	4 cut(s)	136, 164, 443, 592
Bsh1236I	CGCG	1 cut(s)	603
BshFI	GGCC	3 cut(s)	302, 404, 485
BshVI	ATCGAT	1 cut(s)	465
BsiSI	CCGG	2 cut(s)	75, 520
BslI	CCNNNNNNNGG	2 cut(s)	81, 298
BsmAI	GTCTC	2 cut(s)	72, 365
BsnI	GGCC	3 cut(s)	302, 404, 485
Bso31I	GGTCTC	1 cut(s)	365
Bsp119I	TTCGAA	1 cut(s)	280
Bsp1286I	GDGCHC	1 cut(s)	97
Bsp1407I	TGTACA	1 cut(s)	225
Bsp143I	GATC	9 cut(s)	10, 31, 66, 172, 466, 507, 575, 737, 781
BspACI	CCGC	3 cut(s)	42, 608, 773
BspANI	GGCC	3 cut(s)	302, 404, 485
BspDI	ATCGAT	1 cut(s)	465
BspFNI	CGCG	1 cut(s)	603
BspHI	TCATGA	1 cut(s)	117
BspLI	GGNNCC	3 cut(s)	33, 422, 728
BspPI	GGATC	6 cut(s)	26, 39, 180, 461, 583, 789
BspT104I	TTCGAA	1 cut(s)	280
BspTNI	GGTCTC	1 cut(s)	365
BsrDI	GCAATG	1 cut(s)	631
BsrGI	TGTACA	1 cut(s)	225
BsrI	ACTGG	3 cut(s)	390, 709, 728
BssECI	CCNNGG	1 cut(s)	292
BssMI	GATC	9 cut(s)	10, 31, 66, 172, 466, 507, 575, 737, 781
BssT1I	CCWWGG	1 cut(s)	292
Bst2UI	CCWGG	2 cut(s)	353, 379
Bst4CI	ACNGT	2 cut(s)	537, 615
Bst6I	CTCTTC	1 cut(s)	756
BstAUI	TGTACA	1 cut(s)	225
BstBI	TTCGAA	1 cut(s)	280
BstC8I	GCNNGC	5 cut(s)	189, 331, 516, 638, 793
BstDEI	CTNAG	1 cut(s)	394
BstEII	GGTNACC	1 cut(s)	355
BstF5I	GGATG	1 cut(s)	653
BstFNI	CGCG	1 cut(s)	603
BstHHI	GCGC	1 cut(s)	605
BstKTI	GATC	9 cut(s)	13, 34, 69, 175, 469, 510, 578, 740, 784
BstMAI	GTCTC	2 cut(s)	72, 365
BstMBI	GATC	9 cut(s)	10, 31, 66, 172, 466, 507, 575, 737, 781
BstMWI	GCNNNNNNNGC	9 cut(s)	71, 143, 152, 259, 268, 482, 524, 565, 637
BstNI	CCWGG	2 cut(s)	353, 379
BstNSI	RCATGY	1 cut(s)	412
BstPI	GGTNACC	1 cut(s)	355
BstSCI	CCNGG	3 cut(s)	351, 377, 518
BstSFI	CTRYAG	1 cut(s)	642
BstSLI	GKGCMC	1 cut(s)	97
BstUI	CGCG	1 cut(s)	603
BstV1I	GCAGC	4 cut(s)	136, 164, 443, 592
BstV2I	GAAGAC	1 cut(s)	751
BstX2I	RGATCY	1 cut(s)	31
BstXI	CCANNNNNNTGG	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	31
Bsu15I	ATCGAT	1 cut(s)	465
BsuI	GTATCC	1 cut(s)	375
BsuRI	GGCC	3 cut(s)	302, 404, 485
BsuTUI	ATCGAT	1 cut(s)	465
BtsCI	GGATG	1 cut(s)	653
BtsIMutI	CAGTG	1 cut(s)	721
Cac8I	GCNNGC	5 cut(s)	189, 331, 516, 638, 793
CciI	TCATGA	1 cut(s)	117
CfoI	GCGC	1 cut(s)	605
Cfr13I	GGNCC	2 cut(s)	402, 726
ClaI	ATCGAT	1 cut(s)	465
Csp6I	GTAC	2 cut(s)	212, 226
CspCI	CAANNNNNGTGG	2 cut(s)	217, 252
CviAII	CATG	5 cut(s)	106, 118, 338, 409, 425
CviQI	GTAC	2 cut(s)	212, 226
DdeI	CTNAG	1 cut(s)	394
DpnI	GATC	9 cut(s)	12, 33, 68, 174, 468, 509, 577, 739, 783
DpnII	GATC	9 cut(s)	10, 31, 66, 172, 466, 507, 575, 737, 781
DraI	TTTAAA	1 cut(s)	675
Eam1104I	CTCTTC	1 cut(s)	756
EarI	CTCTTC	1 cut(s)	756
Eco130I	CCWWGG	1 cut(s)	292
Eco147I	AGGCCT	2 cut(s)	302, 485
Eco31I	GGTCTC	1 cut(s)	365
Eco47I	GGWCC	1 cut(s)	726
Eco91I	GGTNACC	1 cut(s)	355
EcoO65I	GGTNACC	1 cut(s)	355
EcoRII	CCWGG	2 cut(s)	351, 377
EcoT14I	CCWWGG	1 cut(s)	292
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	292
FaeI	CATG	5 cut(s)	109, 121, 341, 412, 428
FatI	CATG	5 cut(s)	105, 117, 337, 408, 424
FbaI	TGATCA	1 cut(s)	507
Fnu4HI	GCNGC	5 cut(s)	42, 125, 178, 432, 606
FokI	GGATG	1 cut(s)	640
Fsp4HI	GCNGC	5 cut(s)	42, 125, 178, 432, 606
FspBI	CTAG	1 cut(s)	203
GlaI	GCGC	1 cut(s)	604
GluI	GCNGC	5 cut(s)	42, 125, 178, 432, 606
GsuI	CTGGAG	2 cut(s)	361, 716
HaeIII	GGCC	3 cut(s)	302, 404, 485
HapII	CCGG	2 cut(s)	75, 520
HhaI	GCGC	1 cut(s)	605
Hin1II	CATG	5 cut(s)	109, 121, 341, 412, 428
Hin6I	GCGC	1 cut(s)	603
HinP1I	GCGC	1 cut(s)	603
HindIII	AAGCTT	3 cut(s)	275, 314, 566
HinfI	GANTC	1 cut(s)	197
HpaII	CCGG	2 cut(s)	75, 520
HphI	GGTGA	2 cut(s)	349, 727
Hpy188III	TCNNGA	7 cut(s)	35, 118, 470, 545, 573, 695, 741
HpyAV	CCTTC	4 cut(s)	22, 55, 313, 336
HpyCH4III	ACNGT	2 cut(s)	537, 615
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	5 cut(s)	4, 412, 527, 559, 619
HpyF10VI	GCNNNNNNNGC	9 cut(s)	71, 143, 152, 259, 268, 482, 524, 565, 637
HpyF3I	CTNAG	1 cut(s)	394
HpySE526I	ACGT	1 cut(s)	210
Hsp92II	CATG	5 cut(s)	109, 121, 341, 412, 428
HspAI	GCGC	1 cut(s)	603
Ksp22I	TGATCA	1 cut(s)	507
Kzo9I	GATC	9 cut(s)	10, 31, 66, 172, 466, 507, 575, 737, 781
LmnI	GCTCC	3 cut(s)	185, 250, 622
Lsp1109I	GCAGC	4 cut(s)	136, 164, 443, 592
LweI	GCATC	2 cut(s)	463, 676
MaeI	CTAG	1 cut(s)	203
MaeII	ACGT	1 cut(s)	210
MaeIII	GTNAC	2 cut(s)	355, 488
MalI	GATC	9 cut(s)	12, 33, 68, 174, 468, 509, 577, 739, 783
MboI	GATC	9 cut(s)	10, 31, 66, 172, 466, 507, 575, 737, 781
MboII	GAAGA	3 cut(s)	695, 756, 773
MfeI	CAATTG	1 cut(s)	147
MflI	RGATCY	1 cut(s)	31
MhlI	GDGCHC	1 cut(s)	97
MluCI	AATT	3 cut(s)	147, 216, 661
MnlI	CCTC	7 cut(s)	241, 292, 385, 509, 523, 577, 691
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	674, 734
MspI	CCGG	2 cut(s)	75, 520
MspR9I	CCNGG	3 cut(s)	353, 379, 520
MunI	CAATTG	1 cut(s)	147
MvaI	CCWGG	2 cut(s)	353, 379
MvnI	CGCG	1 cut(s)	603
MwoI	GCNNNNNNNGC	9 cut(s)	71, 143, 152, 259, 268, 482, 524, 565, 637
NciI	CCSGG	1 cut(s)	520
NdeII	GATC	9 cut(s)	10, 31, 66, 172, 466, 507, 575, 737, 781
NlaIII	CATG	5 cut(s)	109, 121, 341, 412, 428
NlaIV	GGNNCC	3 cut(s)	33, 422, 728
NmuCI	GTSAC	1 cut(s)	355
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	412
NspV	TTCGAA	1 cut(s)	280
PagI	TCATGA	1 cut(s)	117
PceI	AGGCCT	2 cut(s)	302, 485
PfeI	GAWTC	1 cut(s)	197
PfoI	TCCNGGA	1 cut(s)	377
PkrI	GCNGC	5 cut(s)	43, 126, 179, 433, 607
Psp6I	CCWGG	2 cut(s)	351, 377
PspEI	GGTNACC	1 cut(s)	355
PspGI	CCWGG	2 cut(s)	351, 377
PspN4I	GGNNCC	3 cut(s)	33, 422, 728
PspPI	GGNCC	2 cut(s)	402, 726
PsuI	RGATCY	1 cut(s)	31
RsaI	GTAC	2 cut(s)	213, 227
RsaNI	GTAC	2 cut(s)	212, 226
SaqAI	TTAA	2 cut(s)	674, 734
SatI	GCNGC	5 cut(s)	42, 125, 178, 432, 606
Sau3AI	GATC	9 cut(s)	10, 31, 66, 172, 466, 507, 575, 737, 781
Sau96I	GGNCC	2 cut(s)	402, 726
ScrFI	CCNGG	3 cut(s)	353, 379, 520
SduI	GDGCHC	1 cut(s)	97
SfaNI	GCATC	2 cut(s)	463, 676
SfcI	CTRYAG	1 cut(s)	642
SfuI	TTCGAA	1 cut(s)	280
SinI	GGWCC	1 cut(s)	726
Sse9I	AATT	3 cut(s)	147, 216, 661
SseBI	AGGCCT	2 cut(s)	302, 485
SsiI	CCGC	3 cut(s)	42, 608, 773
SspMI	CTAG	1 cut(s)	203
StuI	AGGCCT	2 cut(s)	302, 485
StyD4I	CCNGG	3 cut(s)	351, 377, 518
StyI	CCWWGG	1 cut(s)	292
TaaI	ACNGT	2 cut(s)	537, 615
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	3 cut(s)	280, 465, 593
TasI	AATT	3 cut(s)	147, 216, 661
TatI	WGTACW	1 cut(s)	225
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	2 cut(s)	674, 734
Tru9I	TTAA	2 cut(s)	674, 734
TscAI	CASTG	1 cut(s)	728
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	4 cut(s)	124, 177, 431, 605
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	3 cut(s)	134, 156, 564
TspRI	CASTG	1 cut(s)	728
VpaK11BI	GGWCC	1 cut(s)	726
XceI	RCATGY	1 cut(s)	412
XspI	CTAG	1 cut(s)	203
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.