Prupe.8G039000_v2.0.a1

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0003372
Physical Location & Seq
Forward (+)
3892002 .. 3896563
4562 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G039000.2

Sequence Viewer

Length: 750 bp
ATGCTGATAGAAGACGAAGAGAGAGAAAGGCATAGCGATGTGAATCCCTCAAAACCCTCGTCTTCCACCAACAAAGATGCCTCTGATGGCTTCGAAACTGCCAGCGACGGCGAACTTGGACTCAATGGTAGCGACAACGACGACGAAACCCAACAACAGCACCAAGTCCAAGAGGAGCAGCAGAGTCTCTCTCAGACCGACGACTTGAAACAGAAAGCATTTGAACAAGCAAATGATGTCAAATTGGAAGGCAATAGACTGTTTGGCAGTGGGCAATATGAAGAGGCATTATCACAGTATGTGCTTGCTTTACACCTTGCGCCTGACATGCCATTATCTGTGGAATTACGTTCAATATGTCACGCAAACAGTGCAATATGCTTCTCGAAATTGGGAAAATATGAGGACGCAATCAAGGAATGCACAAAAGCATTAGAACTAAATCCTTCATATATGAAAGCTCTGCTTAGAAGAGCAGAAGCTCATGAAAAACTAGAGCATTTTGACGAGGCTATTGCTGACATGAAAAAAATCTTGGAACTTGATCCTTCAAATGACCAAGCCAAGAAGACCATTCACCGCTTGGGGCCGCTGGCTGAAGAAAAGAGAGAAAAGATGAAAGAGGAGATGATTGGGAAGCTGAAAGATATGGGCAACTCTTTGTTAGGCCGTTTCGGAATGAGCGTTGACAACTTCAAAGCTGTCAAAGATCCAAACACTGGCTCCTATTCTCTTTCATTCCAACGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_1 TPR_2 TPR_8

Protein Analysis

250

Amino Acids

27.95

Weight (kDa)

4.96

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 719
AciI CCGC 2 cut(s) 580, 590
AclI AACGTT 1 cut(s) 745
AclWI GGATC 2 cut(s) 539, 704
AcuI CTGAAG 1 cut(s) 618
AfiI CCNNNNNNNGG 1 cut(s) 719
AgsI TTSAA 5 cut(s) 208, 224, 354, 552, 697
AjuI GAANNNNNNNTTGG 2 cut(s) 518, 550
AluBI AGCT 4 cut(s) 461, 482, 640, 701
AluI AGCT 4 cut(s) 461, 482, 640, 701
Alw26I GTCTC 1 cut(s) 191
AlwI GGATC 2 cut(s) 539, 704
AoxI GGCC 2 cut(s) 587, 667
ApeKI GCWGC 1 cut(s) 178
ArsI GACNNNNNNTTYG 2 cut(s) 44, 76
AspLEI GCGC 1 cut(s) 322
AspS9I GGNCC 1 cut(s) 587
AsuHPI GGTGA 1 cut(s) 569
AsuII TTCGAA 1 cut(s) 93
BbsI GAAGAC 3 cut(s) 18, 54, 575
BbvI GCAGC 1 cut(s) 190
BccI CCATC 1 cut(s) 80
BceAI ACGGC 2 cut(s) 124, 654
BcgI CGANNNNNNTGC 2 cut(s) 497, 531
BcoDI GTCTC 1 cut(s) 191
BfaI CTAG 1 cut(s) 494
BisI GCNGC 2 cut(s) 179, 590
BlsI GCNGC 2 cut(s) 180, 591
BmgT120I GGNCC 1 cut(s) 587
BmiI GGNNCC 2 cut(s) 588, 724
BmsI GCATC 1 cut(s) 67
BpiI GAAGAC 3 cut(s) 18, 54, 575
BplI GAGNNNNNCTC 2 cut(s) 175, 207
Bpu14I TTCGAA 1 cut(s) 93
BsaBI GATNNNNATC 1 cut(s) 42
BsaXI ACNNNNNCTCC 2 cut(s) 707, 737
Bsc4I CCNNNNNNNGG 1 cut(s) 719
Bse1I ACTGG 1 cut(s) 724
Bse8I GATNNNNATC 1 cut(s) 42
BseJI GATNNNNATC 1 cut(s) 42
BseLI CCNNNNNNNGG 1 cut(s) 719
BseMII CTCAG 1 cut(s) 206
BseNI ACTGG 1 cut(s) 724
BseRI GAGGAG 2 cut(s) 188, 638
BseXI GCAGC 1 cut(s) 190
BshFI GGCC 2 cut(s) 589, 669
BslI CCNNNNNNNGG 1 cut(s) 719
BsmAI GTCTC 1 cut(s) 191
BsmI GAATGC 1 cut(s) 425
BsnI GGCC 2 cut(s) 589, 669
Bsp119I TTCGAA 1 cut(s) 93
Bsp143I GATC 2 cut(s) 544, 709
BspACI CCGC 2 cut(s) 580, 590
BspANI GGCC 2 cut(s) 589, 669
BspCNI CTCAG 1 cut(s) 205
BspHI TCATGA 1 cut(s) 484
BspLI GGNNCC 2 cut(s) 588, 724
BspPI GGATC 2 cut(s) 539, 704
BspQI GCTCTTC 1 cut(s) 466
BspT104I TTCGAA 1 cut(s) 93
BsrI ACTGG 1 cut(s) 724
BssMI GATC 2 cut(s) 544, 709
Bst4CI ACNGT 3 cut(s) 261, 297, 371
Bst6I CTCTTC 3 cut(s) 12, 276, 466
BstAPI GCANNNNNTGC 1 cut(s) 371
BstBI TTCGAA 1 cut(s) 93
BstC8I GCNNGC 3 cut(s) 103, 306, 594
BstDEI CTNAG 2 cut(s) 192, 467
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 2 cut(s) 547, 712
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 2 cut(s) 544, 709
BstMWI GCNNNNNNNGC 2 cut(s) 328, 371
BstNSI RCATGY 1 cut(s) 331
BstV1I GCAGC 1 cut(s) 190
BstV2I GAAGAC 3 cut(s) 18, 54, 575
BstX2I RGATCY 1 cut(s) 709
BstYI RGATCY 1 cut(s) 709
BsuRI GGCC 2 cut(s) 589, 669
BtgZI GCGATG 1 cut(s) 51
BtsI GCAGTG 1 cut(s) 274
BtsIMutI CAGTG 3 cut(s) 274, 376, 717
Cac8I GCNNGC 3 cut(s) 103, 306, 594
CciI TCATGA 1 cut(s) 484
CfoI GCGC 1 cut(s) 322
Cfr13I GGNCC 1 cut(s) 587
CseI GACGC 1 cut(s) 416
CviAII CATG 3 cut(s) 328, 485, 523
DdeI CTNAG 2 cut(s) 192, 467
DpnI GATC 2 cut(s) 546, 711
DpnII GATC 2 cut(s) 544, 709
Eam1104I CTCTTC 3 cut(s) 12, 276, 466
EarI CTCTTC 3 cut(s) 12, 276, 466
Eco57I CTGAAG 1 cut(s) 618
FaeI CATG 3 cut(s) 331, 488, 526
FalI AAGNNNNNCTT 2 cut(s) 450, 482
FatI CATG 3 cut(s) 327, 484, 522
Fnu4HI GCNGC 2 cut(s) 179, 590
Fsp4HI GCNGC 2 cut(s) 179, 590
FspBI CTAG 1 cut(s) 494
GlaI GCGC 1 cut(s) 321
GluI GCNGC 2 cut(s) 179, 590
HaeIII GGCC 2 cut(s) 589, 669
HgaI GACGC 1 cut(s) 416
HhaI GCGC 1 cut(s) 322
Hin1II CATG 3 cut(s) 331, 488, 526
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HincII GTYRAC 1 cut(s) 688
HindII GTYRAC 1 cut(s) 688
HinfI GANTC 3 cut(s) 43, 120, 184
HphI GGTGA 1 cut(s) 569
Hpy166II GTNNAC 1 cut(s) 688
Hpy188I TCNGA 3 cut(s) 85, 195, 677
Hpy188III TCNNGA 2 cut(s) 385, 485
Hpy8I GTNNAC 1 cut(s) 688
Hpy99I CGWCG 4 cut(s) 110, 143, 146, 203
HpyAV CCTTC 3 cut(s) 242, 456, 558
HpyCH4III ACNGT 3 cut(s) 261, 297, 371
HpyCH4IV ACGT 2 cut(s) 349, 745
HpyCH4V TGCA 2 cut(s) 374, 423
HpyF10VI GCNNNNNNNGC 2 cut(s) 328, 371
HpyF3I CTNAG 2 cut(s) 192, 467
HpySE526I ACGT 2 cut(s) 349, 745
Hsp92II CATG 3 cut(s) 331, 488, 526
HspAI GCGC 1 cut(s) 320
Kzo9I GATC 2 cut(s) 544, 709
LguI GCTCTTC 1 cut(s) 466
LmnI GCTCC 2 cut(s) 175, 728
LpnPI CCDG 4 cut(s) 115, 336, 578, 705
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 1 cut(s) 67
MaeI CTAG 1 cut(s) 494
MaeII ACGT 2 cut(s) 349, 745
MaeIII GTNAC 1 cut(s) 359
MalI GATC 2 cut(s) 546, 711
MboI GATC 2 cut(s) 544, 709
MboII GAAGA 7 cut(s) 23, 29, 54, 293, 483, 580, 611
MflI RGATCY 1 cut(s) 709
MluCI AATT 3 cut(s) 242, 344, 389
MlyI GAGTC 2 cut(s) 114, 193
MnlI CCTC 8 cut(s) 58, 67, 91, 166, 277, 397, 502, 616
MslI CAYNNNNRTG 1 cut(s) 36
MspA1I CMGCKG 1 cut(s) 592
Mva1269I GAATGC 1 cut(s) 425
MwoI GCNNNNNNNGC 2 cut(s) 328, 371
NdeII GATC 2 cut(s) 544, 709
NlaIII CATG 3 cut(s) 331, 488, 526
NlaIV GGNNCC 2 cut(s) 588, 724
NmuCI GTSAC 1 cut(s) 359
NspI RCATGY 1 cut(s) 331
NspV TTCGAA 1 cut(s) 93
PagI TCATGA 1 cut(s) 484
PciSI GCTCTTC 1 cut(s) 466
PcsI WCGNNNNNNNCGW 1 cut(s) 681
PctI GAATGC 1 cut(s) 425
PfeI GAWTC 1 cut(s) 43
PflMI CCANNNNNTGG 1 cut(s) 719
PkrI GCNGC 2 cut(s) 180, 591
PleI GAGTC 2 cut(s) 114, 192
PpsI GAGTC 2 cut(s) 114, 192
Psp1406I AACGTT 1 cut(s) 745
PspN4I GGNNCC 2 cut(s) 588, 724
PspPI GGNCC 1 cut(s) 587
PsuI RGATCY 1 cut(s) 709
RseI CAYNNNNRTG 1 cut(s) 36
SapI GCTCTTC 1 cut(s) 466
SatI GCNGC 2 cut(s) 179, 590
Sau3AI GATC 2 cut(s) 544, 709
Sau96I GGNCC 1 cut(s) 587
SchI GAGTC 2 cut(s) 114, 193
SetI ASST 7 cut(s) 318, 352, 463, 484, 642, 703, 748
SfaNI GCATC 1 cut(s) 67
SfuI TTCGAA 1 cut(s) 93
SmiMI CAYNNNNRTG 1 cut(s) 36
Sse9I AATT 3 cut(s) 242, 344, 389
SsiI CCGC 2 cut(s) 580, 590
SspMI CTAG 1 cut(s) 494
TaaI ACNGT 3 cut(s) 261, 297, 371
TaiI ACGT 2 cut(s) 352, 748
TaqI TCGA 2 cut(s) 93, 386
TaqII GACCGA 1 cut(s) 212
TasI AATT 3 cut(s) 242, 344, 389
TauI GCSGC 1 cut(s) 592
TfiI GAWTC 1 cut(s) 43
TscAI CASTG 3 cut(s) 274, 376, 724
TseFI GTSAC 1 cut(s) 359
TseI GCWGC 1 cut(s) 178
Tsp45I GTSAC 1 cut(s) 359
TspDTI ATGAA 7 cut(s) 294, 438, 470, 501, 539, 632, 726
TspRI CASTG 3 cut(s) 274, 376, 724
Van91I CCANNNNNTGG 1 cut(s) 719
XceI RCATGY 1 cut(s) 331
XcmI CCANNNNNNNNNTGG 1 cut(s) 580
XspI CTAG 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.