Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0003372

Physical Location & Seq

Genomic Coordinates Forward (+)

24297587 .. 24300414

Gene Structure 2828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G010460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGCTTATAGAAGAAGAAAAGGAAGAAGAGCACAATGTGAAGACCCCAAAACCCTCGTCGTCCTCCGCCAACAAAGACGCCGCCGATGGCTTCGAAACTGCCAGCGACGGCGAGTTGGGACCGACGAAAGCGACGATGAAACTCAACACCACGTCCAACTTGAAGAGACGGATGACCTTGCATTCAAACAGGTTTTCAATGTTCTCCATCTCTTTTGCTCATTTTAAATCGCTTGAGCAAGCAAATGAGGTAAAATTGGAAGGCAATGAACTGTTTGGGAATGGACAATATGAAGAGGCATTGTCGAAGTATGAACTTGCTTTACAGCTTGCGCCGGACATGCCTTCGTCTGTGGAATTACGTTCCATATGTCATTCGAACCGTGCCATATGCTTTTCGAAGCTGGGAAAATATGACGACACGGTTAAGGAATGCACAAAAGCACTGGAACTAAATCCATCATATATGAAAGCGCTGATTAGAAGAGCAGAAGCTCATGAAAAACTAGAACATTTCGAAGAGGCTATTGCTGATATGAAAAAAATCTTAGAACTTGATCCTTCAAATGACCAAGCCAGGAAGGCCATTCGGCGCTTGGAGCCACTAGCTGAAGCAAAGAGAGAAAAGATGAAAGAGGAGATGATTGGGAAGTTGAAAGATATGGGCAACTCGTTGTTGGGCCGGTTTGGAATGAGCGTTGACAACTTCAAAGCTGTAAAAGATCCAAACACTGGCTCGTATTCTGTTTCATTCCAACGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_2 TPR_8

Protein Analysis

253

Amino Acids

28.52

Weight (kDa)

6.35

Isoelectric Point (pI)

42.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_1	PF00515	124 - 155	2.5e-07	Tetratricopeptide repeat
TPR_2	PF07719	157 - 189	2.4e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30480 AT4G30480 AT4G30480
fragaria_vesca	FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_3g34740 FvH4_4g08690
malus_domestica	MD04G1009600.v1.1 MD16G1260600.v1.1
prunus_persica	Prupe.1G099700_v2.0.a1 Prupe.1G099700_v2.0.a1 Prupe.1G099700_v2.0.a1 Prupe.1G099700_v2.0.a1 Prupe.8G039000_v2.0.a1 Prupe.8G039000_v2.0.a1
pyrus_communis	pycom04g00740 pycom16g22830
rosa_chinensis	RchiOBHm_Chr4g0405181
rosa_laevigata	RLG00000008866
rosa_multiflora	Rmu_sc0004988.1_g000011 Rmu_ssc0000255.1_g000025
rosa_roxburghii	Rroxscaffold_5G00341850 Rroxscaffold_5G00349430
rosa_rugosa	Rorug04G0054700
rosa_samantha	Rh4AG129500 Rh4BG123300 Rh4CG136800 Rh4DG123000
rosa_wichuraiana	Rw4G010460 Rw5G038600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	731
AciI	CCGC	2 cut(s)	66, 81
AclI	AACGTT	1 cut(s)	757
AclWI	GGATC	2 cut(s)	551, 716
AcuI	CTGAAG	1 cut(s)	630
AcyI	GRCGYC	1 cut(s)	78
AdeI	CACNNNGTG	1 cut(s)	37
AfeI	AGCGCT	1 cut(s)	474
AfiI	CCNNNNNNNGG	1 cut(s)	731
AgsI	TTSAA	6 cut(s)	163, 186, 198, 564, 655, 709
AjiI	CACGTC	1 cut(s)	153
AjnI	CCWGG	1 cut(s)	575
AluBI	AGCT	5 cut(s)	328, 403, 494, 608, 713
AluI	AGCT	5 cut(s)	328, 403, 494, 608, 713
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	1 cut(s)	160
AlwI	GGATC	2 cut(s)	551, 716
Aor51HI	AGCGCT	1 cut(s)	474
AoxI	GGCC	2 cut(s)	582, 679
ArsI	GACNNNNNNTTYG	2 cut(s)	41, 73
AspLEI	GCGC	3 cut(s)	334, 475, 594
AspS9I	GGNCC	2 cut(s)	119, 679
AsuII	TTCGAA	4 cut(s)	93, 377, 398, 516
AvaII	GGWCC	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	47
Bbv12I	GWGCWC	1 cut(s)	33
BccI	CCATC	3 cut(s)	80, 215, 466
BceAI	ACGGC	1 cut(s)	124
BciT130I	CCWGG	1 cut(s)	577
BcoDI	GTCTC	1 cut(s)	160
BfaI	CTAG	2 cut(s)	506, 605
BfoI	RGCGCY	2 cut(s)	476, 595
BglI	GCCNNNNNGGC	1 cut(s)	581
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
Bme1390I	CCNGG	1 cut(s)	577
Bme18I	GGWCC	1 cut(s)	119
BmgBI	CACGTC	1 cut(s)	153
BmgT120I	GGNCC	2 cut(s)	119, 679
BmiI	GGNNCC	2 cut(s)	120, 600
BmrFI	CCNGG	1 cut(s)	577
BpiI	GAAGAC	1 cut(s)	47
Bpu14I	TTCGAA	4 cut(s)	93, 377, 398, 516
BpuEI	CTTGAG	1 cut(s)	254
BsaHI	GRCGYC	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	1 cut(s)	731
Bse118I	RCCGGY	1 cut(s)	681
Bse1I	ACTGG	2 cut(s)	450, 736
Bse3DI	GCAATG	1 cut(s)	271
BseBI	CCWGG	1 cut(s)	577
BseGI	GGATG	1 cut(s)	177
BseLI	CCNNNNNNNGG	1 cut(s)	731
BseMI	GCAATG	1 cut(s)	271
BseNI	ACTGG	2 cut(s)	450, 736
BseRI	GAGGAG	1 cut(s)	650
BseYI	CCCAGC	1 cut(s)	403
BshFI	GGCC	2 cut(s)	584, 681
BsiHKAI	GWGCWC	1 cut(s)	33
BsiSI	CCGG	2 cut(s)	335, 682
BslFI	GGGAC	1 cut(s)	132
BslI	CCNNNNNNNGG	1 cut(s)	731
BsmAI	GTCTC	1 cut(s)	160
BsmBI	CGTCTC	1 cut(s)	160
BsmFI	GGGAC	1 cut(s)	132
BsmI	GAATGC	2 cut(s)	181, 437
BsnI	GGCC	2 cut(s)	584, 681
Bsp119I	TTCGAA	4 cut(s)	93, 377, 398, 516
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp143I	GATC	2 cut(s)	556, 721
BspACI	CCGC	2 cut(s)	66, 81
BspANI	GGCC	2 cut(s)	584, 681
BspHI	TCATGA	1 cut(s)	496
BspLI	GGNNCC	2 cut(s)	120, 600
BspPI	GGATC	2 cut(s)	551, 716
BspQI	GCTCTTC	2 cut(s)	21, 478
BspT104I	TTCGAA	4 cut(s)	93, 377, 398, 516
BsrDI	GCAATG	1 cut(s)	271
BsrFI	RCCGGY	1 cut(s)	681
BsrI	ACTGG	2 cut(s)	450, 736
BssAI	RCCGGY	1 cut(s)	681
BssMI	GATC	2 cut(s)	556, 721
BssNI	GRCGYC	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	577
Bst4CI	ACNGT	3 cut(s)	273, 383, 424
Bst6I	CTCTTC	5 cut(s)	21, 158, 288, 478, 513
BstACI	GRCGYC	1 cut(s)	78
BstBI	TTCGAA	4 cut(s)	93, 377, 398, 516
BstC8I	GCNNGC	3 cut(s)	103, 240, 330
BstDEI	CTNAG	1 cut(s)	547
BstF5I	GGATG	1 cut(s)	177
BstH2I	RGCGCY	2 cut(s)	476, 595
BstHHI	GCGC	3 cut(s)	334, 475, 594
BstKTI	GATC	2 cut(s)	559, 724
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	2 cut(s)	556, 721
BstMWI	GCNNNNNNNGC	3 cut(s)	340, 581, 598
BstNI	CCWGG	1 cut(s)	577
BstNSI	RCATGY	1 cut(s)	343
BstSCI	CCNGG	1 cut(s)	575
BstV2I	GAAGAC	1 cut(s)	47
BstX2I	RGATCY	1 cut(s)	721
BstYI	RGATCY	1 cut(s)	721
BsuRI	GGCC	2 cut(s)	584, 681
BtrI	CACGTC	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	177
BtsIMutI	CAGTG	2 cut(s)	443, 729
Cac8I	GCNNGC	3 cut(s)	103, 240, 330
CciI	TCATGA	1 cut(s)	496
CfoI	GCGC	3 cut(s)	334, 475, 594
Cfr10I	RCCGGY	1 cut(s)	681
Cfr13I	GGNCC	2 cut(s)	119, 679
CseI	GACGC	1 cut(s)	86
CviAII	CATG	2 cut(s)	340, 497
DdeI	CTNAG	1 cut(s)	547
DpnI	GATC	2 cut(s)	558, 723
DpnII	GATC	2 cut(s)	556, 721
DraI	TTTAAA	1 cut(s)	226
DraIII	CACNNNGTG	1 cut(s)	37
Eam1104I	CTCTTC	5 cut(s)	21, 158, 288, 478, 513
EarI	CTCTTC	5 cut(s)	21, 158, 288, 478, 513
EciI	GGCGGA	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	119
Eco47III	AGCGCT	1 cut(s)	474
Eco57I	CTGAAG	1 cut(s)	630
EcoRII	CCWGG	1 cut(s)	575
Esp3I	CGTCTC	1 cut(s)	160
FaeI	CATG	2 cut(s)	343, 500
FaqI	GGGAC	1 cut(s)	132
FatI	CATG	2 cut(s)	339, 496
FauNDI	CATATG	2 cut(s)	368, 389
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	1 cut(s)	184
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	2 cut(s)	506, 605
GlaI	GCGC	3 cut(s)	333, 474, 593
GluI	GCNGC	1 cut(s)	81
GsaI	CCCAGC	1 cut(s)	407
HaeII	RGCGCY	2 cut(s)	476, 595
HaeIII	GGCC	2 cut(s)	584, 681
HapII	CCGG	2 cut(s)	335, 682
HgaI	GACGC	1 cut(s)	86
HhaI	GCGC	3 cut(s)	334, 475, 594
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	2 cut(s)	343, 500
Hin6I	GCGC	3 cut(s)	332, 473, 592
HinP1I	GCGC	3 cut(s)	332, 473, 592
HincII	GTYRAC	1 cut(s)	700
HindII	GTYRAC	1 cut(s)	700
HpaII	CCGG	2 cut(s)	335, 682
Hpy166II	GTNNAC	1 cut(s)	700
Hpy188III	TCNNGA	1 cut(s)	497
Hpy8I	GTNNAC	1 cut(s)	700
Hpy99I	CGWCG	4 cut(s)	61, 110, 127, 136
HpyAV	CCTTC	4 cut(s)	254, 354, 570, 574
HpyCH4III	ACNGT	3 cut(s)	273, 383, 424
HpyCH4IV	ACGT	3 cut(s)	152, 361, 757
HpyCH4V	TGCA	2 cut(s)	181, 435
HpyF10VI	GCNNNNNNNGC	3 cut(s)	340, 581, 598
HpyF3I	CTNAG	1 cut(s)	547
HpySE526I	ACGT	3 cut(s)	152, 361, 757
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	2 cut(s)	343, 500
HspAI	GCGC	3 cut(s)	332, 473, 592
Kzo9I	GATC	2 cut(s)	556, 721
LguI	GCTCTTC	2 cut(s)	21, 478
LmnI	GCTCC	1 cut(s)	598
LpnPI	CCDG	9 cut(s)	115, 175, 348, 389, 431, 562, 589, 695, 717
MaeI	CTAG	2 cut(s)	506, 605
MaeII	ACGT	3 cut(s)	152, 361, 757
MalI	GATC	2 cut(s)	558, 723
MboI	GATC	2 cut(s)	556, 721
MboII	GAAGA	9 cut(s)	23, 26, 35, 38, 52, 175, 305, 495, 530
MflI	RGATCY	1 cut(s)	721
MhlI	GDGCHC	1 cut(s)	33
MluCI	AATT	2 cut(s)	254, 356
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	6 cut(s)	64, 73, 241, 289, 514, 628
MseI	TTAA	2 cut(s)	225, 426
MspI	CCGG	2 cut(s)	335, 682
MspR9I	CCNGG	1 cut(s)	577
Mva1269I	GAATGC	2 cut(s)	181, 437
MvaI	CCWGG	1 cut(s)	577
MwoI	GCNNNNNNNGC	3 cut(s)	340, 581, 598
NdeI	CATATG	2 cut(s)	368, 389
NdeII	GATC	2 cut(s)	556, 721
NlaIII	CATG	2 cut(s)	343, 500
NlaIV	GGNNCC	2 cut(s)	120, 600
NspI	RCATGY	1 cut(s)	343
NspV	TTCGAA	4 cut(s)	93, 377, 398, 516
PagI	TCATGA	1 cut(s)	496
PciSI	GCTCTTC	2 cut(s)	21, 478
PcsI	WCGNNNNNNNCGW	1 cut(s)	131
PctI	GAATGC	2 cut(s)	181, 437
PflMI	CCANNNNNTGG	1 cut(s)	731
PkrI	GCNGC	1 cut(s)	82
Psp1406I	AACGTT	1 cut(s)	757
Psp6I	CCWGG	1 cut(s)	575
PspFI	CCCAGC	1 cut(s)	403
PspGI	CCWGG	1 cut(s)	575
PspN4I	GGNNCC	2 cut(s)	120, 600
PspPI	GGNCC	2 cut(s)	119, 679
PsrI	GAACNNNNNNTAC	2 cut(s)	306, 338
PsuI	RGATCY	1 cut(s)	721
SapI	GCTCTTC	2 cut(s)	21, 478
SaqAI	TTAA	2 cut(s)	225, 426
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	2 cut(s)	556, 721
Sau96I	GGNCC	2 cut(s)	119, 679
ScrFI	CCNGG	1 cut(s)	577
SduI	GDGCHC	1 cut(s)	33
SfuI	TTCGAA	4 cut(s)	93, 377, 398, 516
SinI	GGWCC	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	2 cut(s)	254, 356
SsiI	CCGC	2 cut(s)	66, 81
SspMI	CTAG	2 cut(s)	506, 605
StyD4I	CCNGG	1 cut(s)	575
TaaI	ACNGT	3 cut(s)	273, 383, 424
TaiI	ACGT	3 cut(s)	155, 364, 760
TaqI	TCGA	5 cut(s)	93, 305, 377, 398, 516
TaqII	GACCGA	1 cut(s)	136
TasI	AATT	2 cut(s)	254, 356
TauI	GCSGC	1 cut(s)	83
Tru1I	TTAA	2 cut(s)	225, 426
Tru9I	TTAA	2 cut(s)	225, 426
TscAI	CASTG	2 cut(s)	450, 736
TspDTI	ATGAA	9 cut(s)	152, 282, 306, 327, 482, 513, 551, 644, 738
TspGWI	ACGGA	1 cut(s)	184
TspRI	CASTG	2 cut(s)	450, 736
Van91I	CCANNNNNTGG	1 cut(s)	731
VpaK11BI	GGWCC	1 cut(s)	119
XceI	RCATGY	1 cut(s)	343
XcmI	CCANNNNNNNNNTGG	1 cut(s)	592
XspI	CTAG	2 cut(s)	506, 605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.