Rroxscaffold_5G00349430

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0003372
Physical Location & Seq
Forward (+)
22436993 .. 22439853
2861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00349430.1

Sequence Viewer

Length: 756 bp
ATGCTTATAGAAGAAGAAGAGCACAATGTGAAGACCCCAAAACCCTCGTCGTCCTCTGCCAACAAAGACCCCCCTCCGATGGCTTCGAAACTGCCAGCGACGGCGAGTTGGGACCCAACGAAGGCGACGATGAAACCCAACACCACGTCCAACTTGAAGAGACGGATGACCTTGCATTCAAACAGGTTTTCAATGTTCTCCATCTCTTTGCTGGAACAGAAATCGCTTGAGCAAGCAAATGAGGTAAAATTGAAAGGCAATGGACTGTTTGGGAATGGACAATATGAAGAGGCATTGTCGCAGTATGAACTTGCTTTACAGCTTGCGCCTGACATGCCTTCATCCGTGGAATTGCGTTCCATATGTCATTCAAACCGTGCCATATGCTTTTCGAAGCTGGGAAAATACGAAGATGCGGTTAAGGAATGCACAAAAGCACTGGAACTAAATCCTTCATATATGAAAGCGCTGATTAGAAGAGCAGAAGCTCATGAAAAACTAGAACATTTCGAAGAGGCTATTGCTGATATGAAAAAAATCTTAGAACTTGATCCTTCAAATGACCAAGCCAGGAAGGCCATTCGGCGCTTGGAGCCACTTGCTGAAGCAAAGAGAGAAAAGATGAAAGAGGAGATGATTGGGAAGTTGAAAGATATGGGCAACTCGTTGTTGGGCCGGTTTGGAATGAGCGTTGACAACTTCAAAGCTGTAAAAGATCCAAACACTGGCTCGTATTCTGTTTCATTCCAACGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_1 TPR_2 TPR_8

Protein Analysis

251

Amino Acids

28.24

Weight (kDa)

8.8

Isoelectric Point (pI)

46.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_1 PF00515 122 - 153 4.8e-09 Tetratricopeptide repeat
TPR_2 PF07719 122 - 152 2.5e-06 Tetratricopeptide repeat
TPR_16 PF13432 132 - 187 2.9e-06 Tetratricopeptide repeat
TPR_19 PF14559 134 - 196 1.4e-06 Tetratricopeptide repeat
TPR_2 PF07719 155 - 187 2.4e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 725
AciI CCGC 1 cut(s) 416
AclI AACGTT 1 cut(s) 751
AclWI GGATC 2 cut(s) 545, 710
AcuI CTGAAG 1 cut(s) 624
AdeI CACNNNGTG 1 cut(s) 28
AfeI AGCGCT 1 cut(s) 468
AfiI CCNNNNNNNGG 3 cut(s) 79, 121, 725
AgsI TTSAA 8 cut(s) 157, 180, 192, 253, 372, 558, 649, 703
AjiI CACGTC 1 cut(s) 147
AjnI CCWGG 1 cut(s) 569
AluBI AGCT 4 cut(s) 322, 397, 488, 707
AluI AGCT 4 cut(s) 322, 397, 488, 707
Alw21I GWGCWC 1 cut(s) 24
Alw26I GTCTC 1 cut(s) 154
AlwI GGATC 2 cut(s) 545, 710
Aor51HI AGCGCT 1 cut(s) 468
AoxI GGCC 2 cut(s) 576, 673
ArsI GACNNNNNNTTYG 2 cut(s) 32, 64
AspLEI GCGC 3 cut(s) 328, 469, 588
AspS9I GGNCC 2 cut(s) 112, 673
AsuII TTCGAA 3 cut(s) 86, 392, 510
AvaII GGWCC 1 cut(s) 112
BbsI GAAGAC 1 cut(s) 38
Bbv12I GWGCWC 1 cut(s) 24
BccI CCATC 2 cut(s) 73, 209
BceAI ACGGC 1 cut(s) 117
BciT130I CCWGG 1 cut(s) 571
BcoDI GTCTC 1 cut(s) 154
BfaI CTAG 1 cut(s) 500
BfoI RGCGCY 2 cut(s) 470, 589
BglI GCCNNNNNGGC 1 cut(s) 575
Bme1390I CCNGG 1 cut(s) 571
Bme18I GGWCC 1 cut(s) 112
BmgBI CACGTC 1 cut(s) 147
BmgT120I GGNCC 2 cut(s) 112, 673
BmiI GGNNCC 3 cut(s) 113, 114, 594
BmrFI CCNGG 1 cut(s) 571
BmsI GCATC 1 cut(s) 403
BpiI GAAGAC 1 cut(s) 38
Bpu14I TTCGAA 3 cut(s) 86, 392, 510
BpuEI CTTGAG 1 cut(s) 248
BsaJI CCNNGG 1 cut(s) 345
Bsc4I CCNNNNNNNGG 3 cut(s) 79, 121, 725
Bse118I RCCGGY 1 cut(s) 675
Bse1I ACTGG 2 cut(s) 444, 730
Bse3DI GCAATG 1 cut(s) 265
BseBI CCWGG 1 cut(s) 571
BseDI CCNNGG 1 cut(s) 345
BseGI GGATG 2 cut(s) 171, 341
BseLI CCNNNNNNNGG 3 cut(s) 79, 121, 725
BseMI GCAATG 1 cut(s) 265
BseNI ACTGG 2 cut(s) 444, 730
BseRI GAGGAG 1 cut(s) 644
BseYI CCCAGC 1 cut(s) 397
BshFI GGCC 2 cut(s) 578, 675
BsiHKAI GWGCWC 1 cut(s) 24
BsiSI CCGG 1 cut(s) 676
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 3 cut(s) 79, 121, 725
BsmAI GTCTC 1 cut(s) 154
BsmBI CGTCTC 1 cut(s) 154
BsmFI GGGAC 1 cut(s) 125
BsmI GAATGC 2 cut(s) 175, 431
BsnI GGCC 2 cut(s) 578, 675
Bsp119I TTCGAA 3 cut(s) 86, 392, 510
Bsp1286I GDGCHC 1 cut(s) 24
Bsp143I GATC 2 cut(s) 550, 715
BspACI CCGC 1 cut(s) 416
BspANI GGCC 2 cut(s) 578, 675
BspHI TCATGA 1 cut(s) 490
BspLI GGNNCC 3 cut(s) 113, 114, 594
BspPI GGATC 2 cut(s) 545, 710
BspQI GCTCTTC 2 cut(s) 12, 472
BspT104I TTCGAA 3 cut(s) 86, 392, 510
BsrDI GCAATG 1 cut(s) 265
BsrFI RCCGGY 1 cut(s) 675
BsrI ACTGG 2 cut(s) 444, 730
BssAI RCCGGY 1 cut(s) 675
BssECI CCNNGG 1 cut(s) 345
BssMI GATC 2 cut(s) 550, 715
Bst2UI CCWGG 1 cut(s) 571
Bst4CI ACNGT 2 cut(s) 267, 377
Bst6I CTCTTC 5 cut(s) 12, 152, 282, 472, 507
BstBI TTCGAA 3 cut(s) 86, 392, 510
BstC8I GCNNGC 3 cut(s) 96, 234, 324
BstDEI CTNAG 1 cut(s) 541
BstDSI CCRYGG 1 cut(s) 345
BstF5I GGATG 2 cut(s) 171, 341
BstH2I RGCGCY 2 cut(s) 470, 589
BstHHI GCGC 3 cut(s) 328, 469, 588
BstKTI GATC 2 cut(s) 553, 718
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 2 cut(s) 550, 715
BstMWI GCNNNNNNNGC 3 cut(s) 334, 575, 592
BstNI CCWGG 1 cut(s) 571
BstNSI RCATGY 1 cut(s) 337
BstSCI CCNGG 1 cut(s) 569
BstV2I GAAGAC 1 cut(s) 38
BstX2I RGATCY 1 cut(s) 715
BstYI RGATCY 1 cut(s) 715
BsuRI GGCC 2 cut(s) 578, 675
BtgI CCRYGG 1 cut(s) 345
BtrI CACGTC 1 cut(s) 147
BtsCI GGATG 2 cut(s) 171, 341
BtsIMutI CAGTG 2 cut(s) 437, 723
Cac8I GCNNGC 3 cut(s) 96, 234, 324
CciI TCATGA 1 cut(s) 490
CfoI GCGC 3 cut(s) 328, 469, 588
Cfr10I RCCGGY 1 cut(s) 675
Cfr13I GGNCC 2 cut(s) 112, 673
CviAII CATG 2 cut(s) 334, 491
DdeI CTNAG 1 cut(s) 541
DpnI GATC 2 cut(s) 552, 717
DpnII GATC 2 cut(s) 550, 715
DraIII CACNNNGTG 1 cut(s) 28
Eam1104I CTCTTC 5 cut(s) 12, 152, 282, 472, 507
EarI CTCTTC 5 cut(s) 12, 152, 282, 472, 507
Eco47I GGWCC 1 cut(s) 112
Eco47III AGCGCT 1 cut(s) 468
Eco57I CTGAAG 1 cut(s) 624
EcoO109I RGGNCCY 1 cut(s) 112
EcoRII CCWGG 1 cut(s) 569
Esp3I CGTCTC 1 cut(s) 154
FaeI CATG 2 cut(s) 337, 494
FaqI GGGAC 1 cut(s) 125
FatI CATG 2 cut(s) 333, 490
FauNDI CATATG 2 cut(s) 362, 383
FokI GGATG 2 cut(s) 178, 328
FspBI CTAG 1 cut(s) 500
GlaI GCGC 3 cut(s) 327, 468, 587
GsaI CCCAGC 1 cut(s) 401
HaeII RGCGCY 2 cut(s) 470, 589
HaeIII GGCC 2 cut(s) 578, 675
HapII CCGG 1 cut(s) 676
HhaI GCGC 3 cut(s) 328, 469, 588
Hin1II CATG 2 cut(s) 337, 494
Hin6I GCGC 3 cut(s) 326, 467, 586
HinP1I GCGC 3 cut(s) 326, 467, 586
HincII GTYRAC 1 cut(s) 694
HindII GTYRAC 1 cut(s) 694
HpaII CCGG 1 cut(s) 676
Hpy166II GTNNAC 1 cut(s) 694
Hpy188I TCNGA 1 cut(s) 78
Hpy188III TCNNGA 1 cut(s) 491
Hpy8I GTNNAC 1 cut(s) 694
Hpy99I CGWCG 3 cut(s) 52, 103, 130
HpyAV CCTTC 5 cut(s) 115, 348, 462, 564, 568
HpyCH4III ACNGT 2 cut(s) 267, 377
HpyCH4IV ACGT 2 cut(s) 146, 751
HpyCH4V TGCA 2 cut(s) 175, 429
HpyF10VI GCNNNNNNNGC 3 cut(s) 334, 575, 592
HpyF3I CTNAG 1 cut(s) 541
HpySE526I ACGT 2 cut(s) 146, 751
Hsp92II CATG 2 cut(s) 337, 494
HspAI GCGC 3 cut(s) 326, 467, 586
KflI GGGWCCC 1 cut(s) 112
Kzo9I GATC 2 cut(s) 550, 715
LguI GCTCTTC 2 cut(s) 12, 472
LmnI GCTCC 1 cut(s) 592
LweI GCATC 1 cut(s) 403
MaeI CTAG 1 cut(s) 500
MaeII ACGT 2 cut(s) 146, 751
MalI GATC 2 cut(s) 552, 717
MboI GATC 2 cut(s) 550, 715
MboII GAAGA 9 cut(s) 23, 26, 29, 43, 169, 299, 422, 489, 524
MflI RGATCY 1 cut(s) 715
MhlI GDGCHC 1 cut(s) 24
MluCI AATT 2 cut(s) 248, 350
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 7 cut(s) 55, 64, 84, 235, 283, 508, 622
MseI TTAA 1 cut(s) 420
MspI CCGG 1 cut(s) 676
MspR9I CCNGG 1 cut(s) 571
Mva1269I GAATGC 2 cut(s) 175, 431
MvaI CCWGG 1 cut(s) 571
MwoI GCNNNNNNNGC 3 cut(s) 334, 575, 592
NdeI CATATG 2 cut(s) 362, 383
NdeII GATC 2 cut(s) 550, 715
NlaIII CATG 2 cut(s) 337, 494
NlaIV GGNNCC 3 cut(s) 113, 114, 594
NspI RCATGY 1 cut(s) 337
NspV TTCGAA 3 cut(s) 86, 392, 510
PagI TCATGA 1 cut(s) 490
PciSI GCTCTTC 2 cut(s) 12, 472
PcsI WCGNNNNNNNCGW 1 cut(s) 125
PctI GAATGC 2 cut(s) 175, 431
PflMI CCANNNNNTGG 1 cut(s) 725
PpuMI RGGWCCY 1 cut(s) 112
Psp1406I AACGTT 1 cut(s) 751
Psp5II RGGWCCY 1 cut(s) 112
Psp6I CCWGG 1 cut(s) 569
PspFI CCCAGC 1 cut(s) 397
PspGI CCWGG 1 cut(s) 569
PspN4I GGNNCC 3 cut(s) 113, 114, 594
PspPI GGNCC 2 cut(s) 112, 673
PspPPI RGGWCCY 1 cut(s) 112
PsrI GAACNNNNNNTAC 2 cut(s) 300, 332
PsuI RGATCY 1 cut(s) 715
SapI GCTCTTC 2 cut(s) 12, 472
SaqAI TTAA 1 cut(s) 420
Sau3AI GATC 2 cut(s) 550, 715
Sau96I GGNCC 2 cut(s) 112, 673
ScrFI CCNGG 1 cut(s) 571
SduI GDGCHC 1 cut(s) 24
SetI ASST 9 cut(s) 149, 173, 188, 246, 324, 399, 490, 709, 754
SfaNI GCATC 1 cut(s) 403
SfuI TTCGAA 3 cut(s) 86, 392, 510
SinI GGWCC 1 cut(s) 112
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 2 cut(s) 248, 350
SsiI CCGC 1 cut(s) 416
SspMI CTAG 1 cut(s) 500
StyD4I CCNGG 1 cut(s) 569
TaaI ACNGT 2 cut(s) 267, 377
TaiI ACGT 2 cut(s) 149, 754
TaqI TCGA 3 cut(s) 86, 392, 510
TasI AATT 2 cut(s) 248, 350
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TscAI CASTG 2 cut(s) 444, 730
TspGWI ACGGA 2 cut(s) 178, 334
TspRI CASTG 2 cut(s) 444, 730
Van91I CCANNNNNTGG 1 cut(s) 725
VpaK11BI GGWCC 1 cut(s) 112
XceI RCATGY 1 cut(s) 337
XcmI CCANNNNNNNNNTGG 2 cut(s) 208, 586
XspI CTAG 1 cut(s) 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.