Rw5G038600

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0003372
Physical Location & Seq
Forward (+)
68128399 .. 68130817
2419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G038600.1

Sequence Viewer

Length: 624 bp
ATGTGCTCATCAGTGATCACCAGTGTACTGAGAATGAATGGAGAGATTGGAAATGTCATTTGTAATGTGATTGGTAGCCCAGAGTCAGCATACCATGTGGTGACAGAGTCTGGAATTGGAGAAGGTGGTAAATACGAAGACGCGGTTAAGGAATGCACAAAAGCACTGGAATTAAATTGTCATTTTCCCCCACACTTCTTTTCTTCTCTTCTTCCTTTTTTTATTTATTTAGCTTCTATTGTTTGTCGGGGGTTAGAAGCTCACGAAAAACTAGAACATTTCGAAGAGGCTATTACTGATATGAAAAAAATCTTAGAACTTGATCCTTCAAATGACCAAGCCAGGAAGGCCATTCGGTGCTTGGAGCCACTGGCTGAAGCAAAGAGAGAAAAGATGAAAGAAGGGATGATTATTAAGTCGAATAGGAAATTGAAAGATATGGGCAACTCTTTGTTGGGCGCCCGATTTGGAATGAGTATCGACAACTTCAAAGCCGTAAAAACCAAACACTGGCTCCTATTCTATTTCATTCCAACGTCAAACATGGTGGTGAAATTGTTGATAATATTATCCCCTTTCATGAAAATAGACATAATTTATATGAATGGAATTGGTAGTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_1 TPR_2 TPR_8

Protein Analysis

207

Amino Acids

23.26

Weight (kDa)

8.17

Isoelectric Point (pI)

36.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 458
AccB7I CCANNNNNTGG 1 cut(s) 510
AccII CGCG 1 cut(s) 143
AciI CCGC 1 cut(s) 143
AclWI GGATC 1 cut(s) 317
AcuI CTGAAG 1 cut(s) 396
AcyI GRCGYC 1 cut(s) 459
AfaI GTAC 1 cut(s) 27
AfiI CCNNNNNNNGG 1 cut(s) 510
AgsI TTSAA 3 cut(s) 330, 433, 490
AjnI CCWGG 1 cut(s) 341
AluBI AGCT 2 cut(s) 233, 260
AluI AGCT 2 cut(s) 233, 260
Alw21I GWGCWC 1 cut(s) 8
AlwI GGATC 1 cut(s) 317
AlwNI CAGNNNCTG 1 cut(s) 110
AoxI GGCC 1 cut(s) 348
AspLEI GCGC 1 cut(s) 461
AsuHPI GGTGA 3 cut(s) 10, 112, 562
AsuII TTCGAA 1 cut(s) 282
BanI GGYRCC 1 cut(s) 458
BbsI GAAGAC 1 cut(s) 144
Bbv12I GWGCWC 1 cut(s) 8
BceAI ACGGC 1 cut(s) 479
BciT130I CCWGG 1 cut(s) 343
BclI TGATCA 1 cut(s) 15
BfaI CTAG 1 cut(s) 272
BfoI RGCGCY 1 cut(s) 462
BglI GCCNNNNNGGC 1 cut(s) 347
Bme1390I CCNGG 1 cut(s) 343
BmiI GGNNCC 3 cut(s) 366, 460, 515
BmrFI CCNGG 1 cut(s) 343
BpiI GAAGAC 1 cut(s) 144
Bpu14I TTCGAA 1 cut(s) 282
BsaHI GRCGYC 1 cut(s) 459
BsaXI ACNNNNNCTCC 2 cut(s) 498, 528
Bsc4I CCNNNNNNNGG 1 cut(s) 510
Bse1I ACTGG 4 cut(s) 21, 171, 375, 515
BseBI CCWGG 1 cut(s) 343
BseGI GGATG 1 cut(s) 411
BseLI CCNNNNNNNGG 1 cut(s) 510
BseMII CTCAG 1 cut(s) 20
BseNI ACTGG 4 cut(s) 21, 171, 375, 515
Bsh1236I CGCG 1 cut(s) 143
BshFI GGCC 1 cut(s) 350
BshNI GGYRCC 1 cut(s) 458
BsiHKAI GWGCWC 1 cut(s) 8
BslI CCNNNNNNNGG 1 cut(s) 510
BsmI GAATGC 1 cut(s) 158
BsnI GGCC 1 cut(s) 350
Bsp119I TTCGAA 1 cut(s) 282
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 2 cut(s) 15, 322
BspACI CCGC 1 cut(s) 143
BspANI GGCC 1 cut(s) 350
BspCNI CTCAG 1 cut(s) 21
BspFNI CGCG 1 cut(s) 143
BspHI TCATGA 1 cut(s) 579
BspLI GGNNCC 3 cut(s) 366, 460, 515
BspPI GGATC 1 cut(s) 317
BspT104I TTCGAA 1 cut(s) 282
BspT107I GGYRCC 1 cut(s) 458
BsrI ACTGG 4 cut(s) 21, 171, 375, 515
BssMI GATC 2 cut(s) 15, 322
BssNI GRCGYC 1 cut(s) 459
Bst2UI CCWGG 1 cut(s) 343
Bst6I CTCTTC 2 cut(s) 213, 279
BstACI GRCGYC 1 cut(s) 459
BstBI TTCGAA 1 cut(s) 282
BstDEI CTNAG 2 cut(s) 29, 313
BstF5I GGATG 1 cut(s) 411
BstFNI CGCG 1 cut(s) 143
BstH2I RGCGCY 1 cut(s) 462
BstHHI GCGC 1 cut(s) 461
BstKTI GATC 2 cut(s) 18, 325
BstMBI GATC 2 cut(s) 15, 322
BstMWI GCNNNNNNNGC 1 cut(s) 347
BstNI CCWGG 1 cut(s) 343
BstSCI CCNGG 1 cut(s) 341
BstUI CGCG 1 cut(s) 143
BstV2I GAAGAC 1 cut(s) 144
BsuRI GGCC 1 cut(s) 350
BtsCI GGATG 1 cut(s) 411
BtsIMutI CAGTG 5 cut(s) 18, 28, 164, 368, 508
CaiI CAGNNNCTG 1 cut(s) 110
CciI TCATGA 1 cut(s) 579
CfoI GCGC 1 cut(s) 461
CseI GACGC 1 cut(s) 149
Csp6I GTAC 1 cut(s) 26
CspCI CAANNNNNGTGG 2 cut(s) 528, 563
CviAII CATG 3 cut(s) 95, 544, 580
CviQI GTAC 1 cut(s) 26
DdeI CTNAG 2 cut(s) 29, 313
DinI GGCGCC 1 cut(s) 460
DpnI GATC 2 cut(s) 17, 324
DpnII GATC 2 cut(s) 15, 322
Eam1104I CTCTTC 2 cut(s) 213, 279
EarI CTCTTC 2 cut(s) 213, 279
Eco57I CTGAAG 1 cut(s) 396
EcoRII CCWGG 1 cut(s) 341
EgeI GGCGCC 1 cut(s) 460
EheI GGCGCC 1 cut(s) 460
FaeI CATG 3 cut(s) 98, 547, 583
FaiI YATR 9 cut(s) 91, 96, 302, 440, 545, 581, 593, 600, 602
FatI CATG 3 cut(s) 94, 543, 579
FbaI TGATCA 1 cut(s) 15
FokI GGATG 1 cut(s) 418
FspBI CTAG 1 cut(s) 272
GlaI GCGC 1 cut(s) 460
HaeII RGCGCY 1 cut(s) 462
HaeIII GGCC 1 cut(s) 350
HgaI GACGC 1 cut(s) 149
HhaI GCGC 1 cut(s) 461
Hin1I GRCGYC 1 cut(s) 459
Hin1II CATG 3 cut(s) 98, 547, 583
Hin6I GCGC 1 cut(s) 459
HinP1I GCGC 1 cut(s) 459
HinfI GANTC 2 cut(s) 83, 107
HphI GGTGA 3 cut(s) 10, 112, 562
Hpy166II GTNNAC 1 cut(s) 26
Hpy188III TCNNGA 3 cut(s) 111, 263, 580
Hpy8I GTNNAC 1 cut(s) 26
HpyAV CCTTC 4 cut(s) 116, 336, 340, 395
HpyCH4IV ACGT 1 cut(s) 536
HpyCH4V TGCA 1 cut(s) 156
HpyF10VI GCNNNNNNNGC 1 cut(s) 347
HpyF3I CTNAG 2 cut(s) 29, 313
HpySE526I ACGT 1 cut(s) 536
Hsp92I GRCGYC 1 cut(s) 459
Hsp92II CATG 3 cut(s) 98, 547, 583
HspAI GCGC 1 cut(s) 459
KasI GGCGCC 1 cut(s) 458
Ksp22I TGATCA 1 cut(s) 15
Kzo9I GATC 2 cut(s) 15, 322
LmnI GCTCC 2 cut(s) 364, 519
LpnPI CCDG 8 cut(s) 34, 93, 96, 152, 328, 355, 356, 496
MaeI CTAG 1 cut(s) 272
MaeII ACGT 1 cut(s) 536
MaeIII GTNAC 1 cut(s) 100
MalI GATC 2 cut(s) 17, 324
MboI GATC 2 cut(s) 15, 322
MboII GAAGA 5 cut(s) 149, 195, 200, 203, 296
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 7 cut(s) 114, 170, 175, 428, 554, 594, 609
Mly113I GGCGCC 1 cut(s) 459
MlyI GAGTC 2 cut(s) 92, 116
MmeI TCCRAC 1 cut(s) 557
MnlI CCTC 1 cut(s) 280
MseI TTAA 3 cut(s) 147, 173, 414
MslI CAYNNNNRTG 1 cut(s) 548
MspR9I CCNGG 1 cut(s) 343
Mva1269I GAATGC 1 cut(s) 158
MvaI CCWGG 1 cut(s) 343
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 1 cut(s) 347
NarI GGCGCC 1 cut(s) 459
NdeII GATC 2 cut(s) 15, 322
NlaIII CATG 3 cut(s) 98, 547, 583
NlaIV GGNNCC 3 cut(s) 366, 460, 515
NmuCI GTSAC 1 cut(s) 100
NspV TTCGAA 1 cut(s) 282
PagI TCATGA 1 cut(s) 579
PctI GAATGC 1 cut(s) 158
PflFI GACNNNGTC 1 cut(s) 106
PflMI CCANNNNNTGG 1 cut(s) 510
PleI GAGTC 2 cut(s) 91, 115
PluTI GGCGCC 1 cut(s) 462
PpsI GAGTC 2 cut(s) 91, 115
Psp6I CCWGG 1 cut(s) 341
PspGI CCWGG 1 cut(s) 341
PspN4I GGNNCC 3 cut(s) 366, 460, 515
PstNI CAGNNNCTG 1 cut(s) 110
PsyI GACNNNGTC 1 cut(s) 106
RsaI GTAC 1 cut(s) 27
RsaNI GTAC 1 cut(s) 26
RseI CAYNNNNRTG 1 cut(s) 548
SaqAI TTAA 3 cut(s) 147, 173, 414
Sau3AI GATC 2 cut(s) 15, 322
SchI GAGTC 2 cut(s) 92, 116
ScrFI CCNGG 1 cut(s) 343
SduI GDGCHC 1 cut(s) 8
SetI ASST 4 cut(s) 127, 235, 262, 539
SfoI GGCGCC 1 cut(s) 460
SfuI TTCGAA 1 cut(s) 282
SmiMI CAYNNNNRTG 1 cut(s) 548
Sse9I AATT 7 cut(s) 114, 170, 175, 428, 554, 594, 609
SsiI CCGC 1 cut(s) 143
SspDI GGCGCC 1 cut(s) 458
SspI AATATT 1 cut(s) 567
SspMI CTAG 1 cut(s) 272
StyD4I CCNGG 1 cut(s) 341
TaiI ACGT 1 cut(s) 539
TaqI TCGA 4 cut(s) 282, 419, 480, 619
TasI AATT 7 cut(s) 114, 170, 175, 428, 554, 594, 609
TatI WGTACW 1 cut(s) 25
Tru1I TTAA 3 cut(s) 147, 173, 414
Tru9I TTAA 3 cut(s) 147, 173, 414
TscAI CASTG 5 cut(s) 18, 28, 171, 375, 515
TseFI GTSAC 1 cut(s) 100
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 7 cut(s) 50, 317, 410, 517, 568, 596, 617
TspRI CASTG 5 cut(s) 18, 28, 171, 375, 515
Tth111I GACNNNGTC 1 cut(s) 106
Van91I CCANNNNNTGG 1 cut(s) 510
XcmI CCANNNNNNNNNTGG 1 cut(s) 358
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.